RNA–Protein interactions for RNA: ENST00000441089.1

PTPN4-206, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 3

Gene PTPN4, Length 671 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-206ENST00000441089 TFCP2Q12800 502 aa5.75□□□□□ -1.49
PTPN4-206ENST00000441089 TCF15Q12870 199 aa5.75□□□□□ -1.49
PTPN4-206ENST00000441089 G3BP1Q13283 466 aaKnown RBP eCLIP5.75□□□□□ -1.49
PTPN4-206ENST00000441089 GRB14Q14449 540 aa5.75□□□□□ -1.49
PTPN4-206ENST00000441089 KCTD2Q14681 263 aa5.75□□□□□ -1.49
PTPN4-206ENST00000441089 DUOXA2Q1HG44 320 aa5.75□□□□□ -1.49
PTPN4-206ENST00000441089 CCDC57Q2TAC2 916 aa5.75□□□□□ -1.49
PTPN4-206ENST00000441089 FAM47AQ5JRC9 791 aa5.75□□□□□ -1.49
PTPN4-206ENST00000441089 WDR78Q5VTH9 848 aa5.75□□□□□ -1.49
PTPN4-206ENST00000441089 CEP135Q66GS9 1140 aa5.75□□□□□ -1.49
PTPN4-206ENST00000441089 HGSNATQ68CP4 663 aa5.75□□□□□ -1.49
PTPN4-206ENST00000441089 FBXO33Q7Z6M2 555 aa5.75□□□□□ -1.49
PTPN4-206ENST00000441089 DPP9Q86TI2 863 aa5.75□□□□□ -1.49
PTPN4-206ENST00000441089 CCDC84Q86UT8 332 aaPredicted RBP5.75□□□□□ -1.49
PTPN4-206ENST00000441089 CLEC10AQ8IUN9 316 aa5.75□□□□□ -1.49
PTPN4-206ENST00000441089 WDR66Q8TBY9 1149 aa5.75□□□□□ -1.49
PTPN4-206ENST00000441089 ATOH1Q92858 354 aaPredicted RBP5.75□□□□□ -1.49
PTPN4-206ENST00000441089 KIF1BPQ96EK5 621 aa5.75□□□□□ -1.49
PTPN4-206ENST00000441089 IDI2Q9BXS1 227 aa5.75□□□□□ -1.49
PTPN4-206ENST00000441089 LRRCC1Q9C099 1032 aa5.75□□□□□ -1.49
PTPN4-206ENST00000441089 SAP130Q9H0E3 1048 aa5.75□□□□□ -1.49
PTPN4-206ENST00000441089 XPNPEP3Q9NQH7 507 aa5.75□□□□□ -1.49
PTPN4-206ENST00000441089 STARD7Q9NQZ5 370 aa5.75□□□□□ -1.49
PTPN4-206ENST00000441089 USP40Q9NVE5 1235 aa5.75□□□□□ -1.49
PTPN4-206ENST00000441089 FAM13BQ9NYF5 915 aa5.75□□□□□ -1.49
PTPN4-206ENST00000441089 OTOGLQ3ZCN5 2332 aa5.74□□□□□ -1.49
PTPN4-206ENST00000441089 RFXAPO00287 272 aa5.74□□□□□ -1.49
PTPN4-206ENST00000441089 TNFRSF10BO14763 440 aa5.74□□□□□ -1.49
PTPN4-206ENST00000441089 TLR3O15455 904 aaKnown RBP5.74□□□□□ -1.49
PTPN4-206ENST00000441089 STRNO43815 780 aa5.74□□□□□ -1.49
PTPN4-206ENST00000441089 CIAO1O76071 339 aa5.74□□□□□ -1.49
PTPN4-206ENST00000441089 IGHA2P01877 340 aa5.74□□□□□ -1.49
PTPN4-206ENST00000441089 F13BP05160 661 aa5.74□□□□□ -1.49
PTPN4-206ENST00000441089 CYP2E1P05181 493 aaPredicted RBP5.74□□□□□ -1.49
PTPN4-206ENST00000441089 GSPT1P15170 499 aaKnown RBP5.74□□□□□ -1.49
PTPN4-206ENST00000441089 IL9P15248 144 aa5.74□□□□□ -1.49
PTPN4-206ENST00000441089 ATP2A2P16615 1042 aaKnown RBP5.74□□□□□ -1.49
PTPN4-206ENST00000441089 KCNA5P22460 613 aa5.74□□□□□ -1.49
PTPN4-206ENST00000441089 RABGGTBP53611 331 aa5.74□□□□□ -1.49
PTPN4-206ENST00000441089 BACE1P56817 501 aa5.74□□□□□ -1.49
PTPN4-206ENST00000441089 OS9Q13438 667 aaPredicted RBP5.74□□□□□ -1.49
PTPN4-206ENST00000441089 HSP90AB4PQ58FF6 505 aa5.74□□□□□ -1.49
PTPN4-206ENST00000441089 TSHZ3Q63HK5 1081 aa5.74□□□□□ -1.49
PTPN4-206ENST00000441089 KRT40Q6A162 431 aa5.74□□□□□ -1.49
PTPN4-206ENST00000441089 OTOP2Q7RTS6 562 aa5.74□□□□□ -1.49
PTPN4-206ENST00000441089 ZFPM1Q8IX07 1006 aa5.74□□□□□ -1.49
PTPN4-206ENST00000441089 RPUSD2Q8IZ73 545 aaKnown RBP5.74□□□□□ -1.49
PTPN4-206ENST00000441089 POU5F2Q8N7G0 328 aa5.74□□□□□ -1.49
PTPN4-206ENST00000441089 VGLL2Q8N8G2 317 aa5.74□□□□□ -1.49
PTPN4-206ENST00000441089 OR13H1Q8NG92 308 aa5.74□□□□□ -1.49
PTPN4-206ENST00000441089 GADD45GIP1Q8TAE8 222 aaPredicted RBP5.74□□□□□ -1.49
PTPN4-206ENST00000441089 NPLOC4Q8TAT6 608 aa5.74□□□□□ -1.49
PTPN4-206ENST00000441089 ARNTL2Q8WYA1 636 aa5.74□□□□□ -1.49
PTPN4-206ENST00000441089 EAF2Q96CJ1 260 aaPredicted RBP5.74□□□□□ -1.49
PTPN4-206ENST00000441089 POP1Q99575 1024 aaKnown RBP5.74□□□□□ -1.49
PTPN4-206ENST00000441089 MKNK1Q9BUB5 465 aa5.74□□□□□ -1.49
PTPN4-206ENST00000441089 WDR18Q9BV38 432 aa5.74□□□□□ -1.49
PTPN4-206ENST00000441089 BCL11AQ9H165 835 aa5.74□□□□□ -1.49
PTPN4-206ENST00000441089 KCNF1Q9H3M0 494 aa5.74□□□□□ -1.49
PTPN4-206ENST00000441089 FAM86C1Q9NVL1 165 aa5.74□□□□□ -1.49
PTPN4-206ENST00000441089 FRMD4AQ9P2Q2 1039 aaPredicted RBP5.74□□□□□ -1.49
PTPN4-206ENST00000441089 CCDC39Q9UFE4 941 aa5.74□□□□□ -1.49
PTPN4-206ENST00000441089 NRBP1Q9UHY1 535 aa5.74□□□□□ -1.49
PTPN4-206ENST00000441089 COL4A4P53420 1690 aaPredicted RBP5.74□□□□□ -1.49
PTPN4-206ENST00000441089 CNOT1A5YKK6 2376 aaKnown RBP5.74□□□□□ -1.49
PTPN4-206ENST00000441089 COL11A1P12107 1806 aaPredicted RBP5.74□□□□□ -1.49
PTPN4-206ENST00000441089 ELP1O95163 1332 aa5.74□□□□□ -1.49
PTPN4-206ENST00000441089 ZFHX4Q86UP3 3567 aa5.73□□□□□ -1.49
PTPN4-206ENST00000441089 HELZ2Q9BYK8 2649 aaKnown RBP5.73□□□□□ -1.49
PTPN4-206ENST00000441089 PRR23AA6NEV1 266 aa5.73□□□□□ -1.49
PTPN4-206ENST00000441089 KIF28PB7ZC32 967 aa5.73□□□□□ -1.49
PTPN4-206ENST00000441089 PEX10O60683 326 aa5.73□□□□□ -1.49
PTPN4-206ENST00000441089 CA3P07451 260 aa5.73□□□□□ -1.49
PTPN4-206ENST00000441089 ASNSP08243 561 aa5.73□□□□□ -1.49
PTPN4-206ENST00000441089 MYOGP15173 224 aa5.73□□□□□ -1.49
PTPN4-206ENST00000441089 ITGB5P18084 799 aa5.73□□□□□ -1.49
PTPN4-206ENST00000441089 CDC27P30260 824 aa5.73□□□□□ -1.49
PTPN4-206ENST00000441089 CAP2P40123 477 aa5.73□□□□□ -1.49
PTPN4-206ENST00000441089 IL15P40933 162 aaPredicted RBP5.73□□□□□ -1.49
PTPN4-206ENST00000441089 ACLYP53396 1101 aa5.73□□□□□ -1.49
PTPN4-206ENST00000441089 PDE1AP54750 535 aa5.73□□□□□ -1.49
PTPN4-206ENST00000441089 GRB10Q13322 594 aa5.73□□□□□ -1.49
PTPN4-206ENST00000441089 SGO2Q562F6 1265 aa5.73□□□□□ -1.49
PTPN4-206ENST00000441089 TNNI3KQ59H18 835 aa5.73□□□□□ -1.49
PTPN4-206ENST00000441089 HERC4Q5GLZ8 1057 aaPredicted RBP5.73□□□□□ -1.49
PTPN4-206ENST00000441089 AACSQ86V21 672 aa5.73□□□□□ -1.49
PTPN4-206ENST00000441089 ERC1Q8IUD2 1116 aa5.73□□□□□ -1.49
PTPN4-206ENST00000441089 FBXL6Q8N531 539 aa5.73□□□□□ -1.49
PTPN4-206ENST00000441089 ANKS1AQ92625 1134 aa5.73□□□□□ -1.49
PTPN4-206ENST00000441089 GLT1D1Q96MS3 346 aa5.73□□□□□ -1.49
PTPN4-206ENST00000441089 CCDC8Q9H0W5 538 aaPredicted RBP5.73□□□□□ -1.49
PTPN4-206ENST00000441089 MUC3BQ9H195 1237 aa5.73□□□□□ -1.49
PTPN4-206ENST00000441089 CERS4Q9HA82 394 aa5.73□□□□□ -1.49
PTPN4-206ENST00000441089 FPGT-TNNI3KV9GXZ4 949 aa5.73□□□□□ -1.49
PTPN4-206ENST00000441089 BPTFQ12830 3046 aa5.73□□□□□ -1.49
PTPN4-206ENST00000441089 SIP14410 1827 aa5.72□□□□□ -1.49
PTPN4-206ENST00000441089 ROBO3Q96MS0 1386 aa5.72□□□□□ -1.49
PTPN4-206ENST00000441089 MED19A0JLT2 244 aaPredicted RBP5.72□□□□□ -1.49
PTPN4-206ENST00000441089 DDTLA6NHG4 134 aaPredicted RBP5.72□□□□□ -1.49
PTPN4-206ENST00000441089 ACPPP15309 386 aa5.72□□□□□ -1.49
Retrieved 100 of 20,778 RNA–protein pairs in 15.1 ms