RNA–Protein interactions for RNA: ENST00000437600.8

CUX1-206, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 3,031 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-206ENST00000437600 STK17AQ9UEE5 414 aa10.45□□□□□ -0.74
CUX1-206ENST00000437600 PHF20L1A8MW92 1017 aa10.44□□□□□ -0.74
CUX1-206ENST00000437600 KRT86O43790 486 aa10.44□□□□□ -0.74
CUX1-206ENST00000437600 ASNSP08243 561 aa10.44□□□□□ -0.74
CUX1-206ENST00000437600 SPATA31C1P0DKV0 1188 aa10.44□□□□□ -0.74
CUX1-206ENST00000437600 MYBP10242 640 aa10.44□□□□□ -0.74
CUX1-206ENST00000437600 CYLC1P35663 651 aaPredicted RBP10.44□□□□□ -0.74
CUX1-206ENST00000437600 CASP4P49662 377 aa10.44□□□□□ -0.74
CUX1-206ENST00000437600 KIF11P52732 1056 aa10.44□□□□□ -0.74
CUX1-206ENST00000437600 MTMR2Q13614 643 aa10.44□□□□□ -0.74
CUX1-206ENST00000437600 TMEM119Q4V9L6 283 aa10.44□□□□□ -0.74
CUX1-206ENST00000437600 ZC2HC1CQ53FD0 456 aaPredicted RBP10.44□□□□□ -0.74
CUX1-206ENST00000437600 FAM114A1Q8IWE2 563 aa10.44□□□□□ -0.74
CUX1-206ENST00000437600 RDH13Q8NBN7 331 aa10.44□□□□□ -0.74
CUX1-206ENST00000437600 NEK11Q8NG66 645 aa10.44□□□□□ -0.74
CUX1-206ENST00000437600 PURBQ96QR8 312 aaKnown RBP10.44□□□□□ -0.74
CUX1-206ENST00000437600 ADAMTS1Q9UHI8 967 aa10.44□□□□□ -0.74
CUX1-206ENST00000437600 PLAGL2Q9UPG8 496 aa10.44□□□□□ -0.74
CUX1-206ENST00000437600 PCDHA13Q9Y5I0 950 aa10.44□□□□□ -0.74
CUX1-206ENST00000437600 MSH4O15457 936 aa10.44□□□□□ -0.74
CUX1-206ENST00000437600 SLC9A1P19634 815 aa10.44□□□□□ -0.74
CUX1-206ENST00000437600 KRT83P78385 493 aa10.44□□□□□ -0.74
CUX1-206ENST00000437600 FKBP3Q00688 224 aaKnown RBP10.44□□□□□ -0.74
CUX1-206ENST00000437600 SPP2Q13103 211 aa10.44□□□□□ -0.74
CUX1-206ENST00000437600 MEA1Q16626 185 aa10.44□□□□□ -0.74
CUX1-206ENST00000437600 MAN2A1Q16706 1144 aa10.44□□□□□ -0.74
CUX1-206ENST00000437600 BEND6Q5SZJ8 279 aaPredicted RBP10.44□□□□□ -0.74
CUX1-206ENST00000437600 NFRKBQ6P4R8 1299 aa10.44□□□□□ -0.74
CUX1-206ENST00000437600 GJB7Q6PEY0 223 aa10.44□□□□□ -0.74
CUX1-206ENST00000437600 RIN2Q8WYP3 895 aaPredicted RBP10.44□□□□□ -0.74
CUX1-206ENST00000437600 MS4A14Q96JA4 679 aa10.44□□□□□ -0.74
CUX1-206ENST00000437600 ERGIC2Q96RQ1 377 aa10.44□□□□□ -0.74
CUX1-206ENST00000437600 REEP2Q9BRK0 252 aa10.44□□□□□ -0.74
CUX1-206ENST00000437600 RRAGCQ9HB90 399 aa10.44□□□□□ -0.74
CUX1-206ENST00000437600 TLR2O60603 784 aa10.44□□□□□ -0.74
CUX1-206ENST00000437600 MYBL2P10244 700 aa10.44□□□□□ -0.74
CUX1-206ENST00000437600 DCAF17Q5H9S7 520 aaPredicted RBP10.44□□□□□ -0.74
CUX1-206ENST00000437600 LDHDQ86WU2 507 aa10.44□□□□□ -0.74
CUX1-206ENST00000437600 SFR1Q86XK3 245 aa10.44□□□□□ -0.74
CUX1-206ENST00000437600 FAM133AQ8N9E0 248 aa10.44□□□□□ -0.74
CUX1-206ENST00000437600 WNK4Q96J92 1243 aa10.44□□□□□ -0.74
CUX1-206ENST00000437600 LSM14BQ9BX40 385 aaKnown RBP10.44□□□□□ -0.74
CUX1-206ENST00000437600 PACSIN1Q9BY11 444 aa10.44□□□□□ -0.74
CUX1-206ENST00000437600 PCDHB13Q9Y5F0 798 aa10.44□□□□□ -0.74
CUX1-206ENST00000437600 SSC5DA1L4H1 1573 aa10.43□□□□□ -0.74
CUX1-206ENST00000437600 NFIBO00712 420 aa10.43□□□□□ -0.74
CUX1-206ENST00000437600 NOL4O94818 638 aa10.43□□□□□ -0.74
CUX1-206ENST00000437600 NR2F2P24468 414 aa10.43□□□□□ -0.74
CUX1-206ENST00000437600 MAGEA1P43355 309 aa10.43□□□□□ -0.74
CUX1-206ENST00000437600 EHHADHQ08426 723 aa10.43□□□□□ -0.74
CUX1-206ENST00000437600 RAPGEF1Q13905 1077 aa10.43□□□□□ -0.74
CUX1-206ENST00000437600 FKBP1CQ5VVH2 108 aa10.43□□□□□ -0.74
CUX1-206ENST00000437600 TRAPPC11Q7Z392 1133 aa10.43□□□□□ -0.74
CUX1-206ENST00000437600 SULF1Q8IWU6 871 aa10.43□□□□□ -0.74
CUX1-206ENST00000437600 LENG9Q96B70 501 aa10.43□□□□□ -0.74
CUX1-206ENST00000437600 DCPSQ96C86 337 aaKnown RBP10.43□□□□□ -0.74
CUX1-206ENST00000437600 RUSC1Q9BVN2 902 aa10.43□□□□□ -0.74
CUX1-206ENST00000437600 MAGEF1Q9HAY2 307 aa10.43□□□□□ -0.74
CUX1-206ENST00000437600 RAVER2Q9HCJ3 691 aaKnown RBP10.43□□□□□ -0.74
CUX1-206ENST00000437600 KCNMB3Q9NPA1 279 aa10.43□□□□□ -0.74
CUX1-206ENST00000437600 NMRK2Q9NPI5 230 aa10.43□□□□□ -0.74
CUX1-206ENST00000437600 UTP18Q9Y5J1 556 aaKnown RBP eCLIP10.43□□□□□ -0.74
CUX1-206ENST00000437600 COL4A3BPQ9Y5P4 624 aa10.43□□□□□ -0.74
CUX1-206ENST00000437600 PEX10O60683 326 aa10.43□□□□□ -0.74
CUX1-206ENST00000437600 FLOT1O75955 427 aa10.43□□□□□ -0.74
CUX1-206ENST00000437600 ALAS1P13196 640 aa10.43□□□□□ -0.74
CUX1-206ENST00000437600 SPIRE1Q08AE8 756 aa10.43□□□□□ -0.74
CUX1-206ENST00000437600 BAP1Q92560 729 aa10.43□□□□□ -0.74
CUX1-206ENST00000437600 TSG101Q99816 390 aa10.43□□□□□ -0.74
CUX1-206ENST00000437600 NUP58Q9BVL2 599 aa10.43□□□□□ -0.74
CUX1-206ENST00000437600 TAF1DQ9H5J8 278 aaPredicted RBP10.43□□□□□ -0.74
CUX1-206ENST00000437600 CCPG1Q9ULG6 757 aa10.43□□□□□ -0.74
CUX1-206ENST00000437600 DNM3Q9UQ16 869 aa10.43□□□□□ -0.74
CUX1-206ENST00000437600 PCDHA2Q9Y5H9 948 aa10.43□□□□□ -0.74
CUX1-206ENST00000437600 HTTP42858 3142 aa10.42□□□□□ -0.74
CUX1-206ENST00000437600 LRRIQ3A6PVS8 624 aaPredicted RBP10.42□□□□□ -0.74
CUX1-206ENST00000437600 NMT1P30419 496 aaKnown RBP10.42□□□□□ -0.74
CUX1-206ENST00000437600 HOXD13P35453 343 aa10.42□□□□□ -0.74
CUX1-206ENST00000437600 SLC12A3P55017 1021 aa10.42□□□□□ -0.74
CUX1-206ENST00000437600 KCNH2Q12809 1159 aa10.42□□□□□ -0.74
CUX1-206ENST00000437600 GIT2Q14161 759 aa10.42□□□□□ -0.74
CUX1-206ENST00000437600 COG2Q14746 738 aa10.42□□□□□ -0.74
CUX1-206ENST00000437600 BTNL9Q6UXG8 535 aa10.42□□□□□ -0.74
CUX1-206ENST00000437600 ETNPPLQ8TBG4 499 aa10.42□□□□□ -0.74
CUX1-206ENST00000437600 CCDC102AQ96A19 550 aa10.42□□□□□ -0.74
CUX1-206ENST00000437600 HOOK2Q96ED9 719 aa10.42□□□□□ -0.74
CUX1-206ENST00000437600 ABCB11O95342 1321 aa10.42□□□□□ -0.74
CUX1-206ENST00000437600 EIF3CLB5ME19 914 aaKnown RBP10.42□□□□□ -0.74
CUX1-206ENST00000437600 GCNT3O95395 438 aa10.42□□□□□ -0.74
CUX1-206ENST00000437600 FTCDO95954 541 aa10.42□□□□□ -0.74
CUX1-206ENST00000437600 TNNT3P45378 269 aaPredicted RBP10.42□□□□□ -0.74
CUX1-206ENST00000437600 CCDC65Q8IXS2 484 aa10.42□□□□□ -0.74
CUX1-206ENST00000437600 CHURC1Q8WUH1 139 aa10.42□□□□□ -0.74
CUX1-206ENST00000437600 EIF3CQ99613 913 aaKnown RBP10.42□□□□□ -0.74
CUX1-206ENST00000437600 WDR18Q9BV38 432 aa10.42□□□□□ -0.74
CUX1-206ENST00000437600 TTLL12Q14166 644 aaPredicted RBP10.42□□□□□ -0.74
CUX1-206ENST00000437600 APOBEC3FQ8IUX4 373 aaKnown RBP10.42□□□□□ -0.74
CUX1-206ENST00000437600 ELMO3Q96BJ8 720 aa10.42□□□□□ -0.74
CUX1-206ENST00000437600 VPS18Q9P253 973 aa10.42□□□□□ -0.74
CUX1-206ENST00000437600 WRAP73Q9P2S5 460 aaPredicted RBP10.42□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms