RNA–Protein interactions for RNA: ENST00000429035.1

SDC1-204, Transcript of syndecan 1, humanhuman

TSL 3

Gene SDC1, Length 646 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-204ENST00000429035 TMEM31Q5JXX7 168 aa16.53■□□□□ 0.24
SDC1-204ENST00000429035 POTEBQ6S5H4 581 aa16.53■□□□□ 0.24
SDC1-204ENST00000429035 PLA2G4DQ86XP0 818 aa16.53■□□□□ 0.24
SDC1-204ENST00000429035 ZNF713Q8N859 430 aaPredicted RBP16.53■□□□□ 0.24
SDC1-204ENST00000429035 PPP1R16BQ96T49 567 aa16.53■□□□□ 0.24
SDC1-204ENST00000429035 CD320Q9NPF0 282 aa16.53■□□□□ 0.24
SDC1-204ENST00000429035 BARHL2Q9NY43 387 aa16.53■□□□□ 0.24
SDC1-204ENST00000429035 GRM6O15303 877 aa16.52■□□□□ 0.24
SDC1-204ENST00000429035 BMPR1AP36894 532 aa16.52■□□□□ 0.24
SDC1-204ENST00000429035 APOBRQ0VD83 1088 aa16.52■□□□□ 0.24
SDC1-204ENST00000429035 FUT2Q10981 343 aa16.52■□□□□ 0.24
SDC1-204ENST00000429035 CLUL1Q15846 466 aa16.52■□□□□ 0.24
SDC1-204ENST00000429035 TMEM266Q2M3C6 531 aa16.52■□□□□ 0.24
SDC1-204ENST00000429035 FAM160B1Q5W0V3 765 aa16.52■□□□□ 0.24
SDC1-204ENST00000429035 TRMT1LQ7Z2T5 733 aaKnown RBP16.52■□□□□ 0.24
SDC1-204ENST00000429035 CKAP2LQ8IYA6 745 aa16.52■□□□□ 0.24
SDC1-204ENST00000429035 PABPC5Q96DU9 382 aaKnown RBP16.52■□□□□ 0.24
SDC1-204ENST00000429035 LRFN3Q9BTN0 628 aa16.52■□□□□ 0.24
SDC1-204ENST00000429035 GLT8D2Q9H1C3 349 aa16.52■□□□□ 0.24
SDC1-204ENST00000429035 LRFN2Q9ULH4 789 aa16.52■□□□□ 0.24
SDC1-204ENST00000429035 HCN4Q9Y3Q4 1203 aa16.52■□□□□ 0.24
SDC1-204ENST00000429035 PCDHA2Q9Y5H9 948 aa16.52■□□□□ 0.24
SDC1-204ENST00000429035 PLXNA4Q9HCM2 1894 aa16.52■□□□□ 0.23
SDC1-204ENST00000429035 KRT76Q01546 638 aa16.51■□□□□ 0.23
SDC1-204ENST00000429035 NFX1Q12986 1120 aaKnown RBP16.51■□□□□ 0.23
SDC1-204ENST00000429035 PDXDC2PQ6P474 469 aa16.51■□□□□ 0.23
SDC1-204ENST00000429035 MTHFD1LQ6UB35 978 aa16.51■□□□□ 0.23
SDC1-204ENST00000429035 PLPPR4Q7Z2D5 763 aa16.51■□□□□ 0.23
SDC1-204ENST00000429035 NPAS4Q8IUM7 802 aa16.51■□□□□ 0.23
SDC1-204ENST00000429035 CCDC60Q8IWA6 550 aaPredicted RBP16.51■□□□□ 0.23
SDC1-204ENST00000429035 FAM178BQ8IXR5 827 aa16.51■□□□□ 0.23
SDC1-204ENST00000429035 GJD3Q8N144 294 aa16.51■□□□□ 0.23
SDC1-204ENST00000429035 FAM122AQ96E09 287 aa16.51■□□□□ 0.23
SDC1-204ENST00000429035 JAKMIP1Q96N16 626 aaKnown RBP16.51■□□□□ 0.23
SDC1-204ENST00000429035 FTHL17Q9BXU8 183 aa16.51■□□□□ 0.23
SDC1-204ENST00000429035 LMAN2LQ9H0V9 348 aa16.51■□□□□ 0.23
SDC1-204ENST00000429035 IGFLR1Q9H665 355 aa16.51■□□□□ 0.23
SDC1-204ENST00000429035 RC3H2Q9HBD1 1191 aaKnown RBP16.51■□□□□ 0.23
SDC1-204ENST00000429035 PADI3Q9ULW8 664 aa16.51■□□□□ 0.23
SDC1-204ENST00000429035 MRPL42Q9Y6G3 142 aaKnown RBP16.51■□□□□ 0.23
SDC1-204ENST00000429035 FNDC1Q4ZHG4 1894 aaPredicted RBP16.5■□□□□ 0.23
SDC1-204ENST00000429035 IGSF9BQ9UPX0 1349 aa16.5■□□□□ 0.23
SDC1-204ENST00000429035 SMIM35A0A1B0GVV1 85 aa16.5■□□□□ 0.23
SDC1-204ENST00000429035 GRXCR2A6NFK2 248 aa16.5■□□□□ 0.23
SDC1-204ENST00000429035 C5orf67F2Z3F1 127 aa16.5■□□□□ 0.23
SDC1-204ENST00000429035 PPFIA3O75145 1194 aa16.5■□□□□ 0.23
SDC1-204ENST00000429035 DGKIO75912 1065 aa16.5■□□□□ 0.23
SDC1-204ENST00000429035 CCNE2O96020 404 aa16.5■□□□□ 0.23
SDC1-204ENST00000429035 RB1P06400 928 aa16.5■□□□□ 0.23
SDC1-204ENST00000429035 STAG3L1P0CL83 205 aa16.5■□□□□ 0.23
SDC1-204ENST00000429035 SCG2P13521 617 aa16.5■□□□□ 0.23
SDC1-204ENST00000429035 ADD1P35611 737 aaKnown RBP16.5■□□□□ 0.23
SDC1-204ENST00000429035 CLK2P49760 499 aaKnown RBP16.5■□□□□ 0.23
SDC1-204ENST00000429035 GATMP50440 423 aa16.5■□□□□ 0.23
SDC1-204ENST00000429035 PUS10Q3MIT2 529 aaKnown RBP16.5■□□□□ 0.23
SDC1-204ENST00000429035 MIS18BP1Q6P0N0 1132 aa16.5■□□□□ 0.23
SDC1-204ENST00000429035 Q6ZUG5 572 aa16.5■□□□□ 0.23
SDC1-204ENST00000429035 NEK9Q8TD19 979 aa16.5■□□□□ 0.23
SDC1-204ENST00000429035 BRF1Q92994 677 aa16.5■□□□□ 0.23
SDC1-204ENST00000429035 CELF4Q9BZC1 486 aaKnown RBP16.5■□□□□ 0.23
SDC1-204ENST00000429035 ALG13Q9NP73 1137 aaKnown RBP16.5■□□□□ 0.23
SDC1-204ENST00000429035 ZNF302Q9NR11 478 aa16.5■□□□□ 0.23
SDC1-204ENST00000429035 FAM217BQ9NTX9 383 aaPredicted RBP16.5■□□□□ 0.23
SDC1-204ENST00000429035 FAM50BQ9Y247 325 aa16.5■□□□□ 0.23
SDC1-204ENST00000429035 FAM86B1E9PN63 330 aa16.49■□□□□ 0.23
SDC1-204ENST00000429035 MEIS1O00470 390 aa16.49■□□□□ 0.23
SDC1-204ENST00000429035 HBP1O60381 514 aa16.49■□□□□ 0.23
SDC1-204ENST00000429035 HMGB1P09429 215 aaKnown RBP16.49■□□□□ 0.23
SDC1-204ENST00000429035 FAM86B2P0C5J1 330 aa16.49■□□□□ 0.23
SDC1-204ENST00000429035 LINC00271P0C7V0 271 aa16.49■□□□□ 0.23
SDC1-204ENST00000429035 KLRC1P26715 233 aa16.49■□□□□ 0.23
SDC1-204ENST00000429035 AKAP17AQ02040 695 aaKnown RBP16.49■□□□□ 0.23
SDC1-204ENST00000429035 PFKFB3Q16875 520 aaPredicted RBP16.49■□□□□ 0.23
SDC1-204ENST00000429035 SPOUT1Q5T280 376 aaKnown RBP16.49■□□□□ 0.23
SDC1-204ENST00000429035 BLOC1S2Q6QNY1 142 aa16.49■□□□□ 0.23
SDC1-204ENST00000429035 CMTR2Q8IYT2 770 aaKnown RBP16.49■□□□□ 0.23
SDC1-204ENST00000429035 REXO1Q8N1G1 1221 aaKnown RBP16.49■□□□□ 0.23
SDC1-204ENST00000429035 ATP8B4Q8TF62 1192 aa16.49■□□□□ 0.23
SDC1-204ENST00000429035 CLP1Q92989 425 aaKnown RBP16.49■□□□□ 0.23
SDC1-204ENST00000429035 ZNF689Q96CS4 500 aaPredicted RBP16.49■□□□□ 0.23
SDC1-204ENST00000429035 ZNF577Q9BSK1 485 aa16.49■□□□□ 0.23
SDC1-204ENST00000429035 CCDC196A0A1B0GTZ2 297 aa16.48■□□□□ 0.23
SDC1-204ENST00000429035 IPO5O00410 1097 aaKnown RBP16.48■□□□□ 0.23
SDC1-204ENST00000429035 MMP1P03956 469 aa16.48■□□□□ 0.23
SDC1-204ENST00000429035 PLA2G5P39877 138 aa16.48■□□□□ 0.23
SDC1-204ENST00000429035 SLC26A2P50443 739 aa16.48■□□□□ 0.23
SDC1-204ENST00000429035 SETQ01105 290 aaPredicted RBP16.48■□□□□ 0.23
SDC1-204ENST00000429035 HYAL1Q12794 435 aa16.48■□□□□ 0.23
SDC1-204ENST00000429035 SWSAP1Q6NVH7 229 aa16.48■□□□□ 0.23
SDC1-204ENST00000429035 NIPA1Q7RTP0 329 aa16.48■□□□□ 0.23
SDC1-204ENST00000429035 RASGRP4Q8TDF6 673 aa16.48■□□□□ 0.23
SDC1-204ENST00000429035 CCDC12Q8WUD4 166 aaPredicted RBP16.48■□□□□ 0.23
SDC1-204ENST00000429035 C6orf50Q9HD87 102 aa16.48■□□□□ 0.23
SDC1-204ENST00000429035 SQORQ9Y6N5 450 aa16.48■□□□□ 0.23
SDC1-204ENST00000429035 COL1A2P08123 1366 aa16.48■□□□□ 0.23
SDC1-204ENST00000429035 DENND3A2RUS2 1198 aa16.47■□□□□ 0.23
SDC1-204ENST00000429035 RPS6KA5O75582 802 aa16.47■□□□□ 0.23
SDC1-204ENST00000429035 ATG7O95352 703 aa16.47■□□□□ 0.23
SDC1-204ENST00000429035 GTF2F1P35269 517 aaKnown RBP eCLIP16.47■□□□□ 0.23
SDC1-204ENST00000429035 NDUFV1P49821 464 aa16.47■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 39.6 ms