RNA–Protein interactions for RNA: ENST00000427112.6

USP40-203, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene USP40, Length 3,744 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-203ENST00000427112 TBK1Q9UHD2 729 aa9.45□□□□□ -0.9
USP40-203ENST00000427112 GGA1Q9UJY5 639 aa9.45□□□□□ -0.9
USP40-203ENST00000427112 GRIN2DO15399 1336 aa9.45□□□□□ -0.9
USP40-203ENST00000427112 SPDYE3A6NKU9 549 aa9.45□□□□□ -0.9
USP40-203ENST00000427112 AKAP3O75969 853 aa9.45□□□□□ -0.9
USP40-203ENST00000427112 MARCKSL1P49006 195 aa9.45□□□□□ -0.9
USP40-203ENST00000427112 EXOC3L4Q17RC7 722 aa9.45□□□□□ -0.9
USP40-203ENST00000427112 PRUNE1Q86TP1 453 aa9.45□□□□□ -0.9
USP40-203ENST00000427112 ANKRD42Q8N9B4 389 aa9.45□□□□□ -0.9
USP40-203ENST00000427112 RBM46Q8TBY0 533 aaKnown RBP9.45□□□□□ -0.9
USP40-203ENST00000427112 CTNNBL1Q8WYA6 563 aaPredicted RBP9.45□□□□□ -0.9
USP40-203ENST00000427112 PIK3R5Q8WYR1 880 aa9.45□□□□□ -0.9
USP40-203ENST00000427112 CCT8L2Q96SF2 557 aa9.45□□□□□ -0.9
USP40-203ENST00000427112 PAIP2Q9BPZ3 127 aaKnown RBP9.45□□□□□ -0.9
USP40-203ENST00000427112 PYM1Q9BRP8 204 aaKnown RBP9.45□□□□□ -0.9
USP40-203ENST00000427112 TACO1Q9BSH4 297 aaKnown RBP9.45□□□□□ -0.9
USP40-203ENST00000427112 TSGA10Q9BZW7 698 aa9.45□□□□□ -0.9
USP40-203ENST00000427112 PNMA2Q9UL42 364 aa9.45□□□□□ -0.9
USP40-203ENST00000427112 NOC2LQ9Y3T9 749 aaKnown RBP9.45□□□□□ -0.9
USP40-203ENST00000427112 ATP6V0A2Q9Y487 856 aa9.45□□□□□ -0.9
USP40-203ENST00000427112 DAGLAQ9Y4D2 1042 aa9.45□□□□□ -0.9
USP40-203ENST00000427112 SHBGP04278 402 aa9.45□□□□□ -0.9
USP40-203ENST00000427112 FGFR4P22455 802 aa9.45□□□□□ -0.9
USP40-203ENST00000427112 HSD17B3P37058 310 aa9.45□□□□□ -0.9
USP40-203ENST00000427112 PAK2Q13177 524 aa9.45□□□□□ -0.9
USP40-203ENST00000427112 TRAPPC3LQ5T215 181 aa9.45□□□□□ -0.9
USP40-203ENST00000427112 LLGL2Q6P1M3 1020 aa9.45□□□□□ -0.9
USP40-203ENST00000427112 PNMA8AQ86V59 439 aaPredicted RBP9.45□□□□□ -0.9
USP40-203ENST00000427112 HOOK2Q96ED9 719 aa9.45□□□□□ -0.9
USP40-203ENST00000427112 RUSC1Q9BVN2 902 aa9.45□□□□□ -0.9
USP40-203ENST00000427112 RAB34Q9BZG1 259 aa9.45□□□□□ -0.9
USP40-203ENST00000427112 HAUS2Q9NVX0 235 aa9.45□□□□□ -0.9
USP40-203ENST00000427112 MTMR4Q9NYA4 1195 aa9.45□□□□□ -0.9
USP40-203ENST00000427112 CNOT8Q9UFF9 292 aaKnown RBP9.45□□□□□ -0.9
USP40-203ENST00000427112 MYBL1P10243 752 aa9.44□□□□□ -0.9
USP40-203ENST00000427112 MCM3P25205 808 aa9.44□□□□□ -0.9
USP40-203ENST00000427112 CCDC65Q8IXS2 484 aa9.44□□□□□ -0.9
USP40-203ENST00000427112 SYCP3Q8IZU3 236 aa9.44□□□□□ -0.9
USP40-203ENST00000427112 CCDC127Q96BQ5 260 aa9.44□□□□□ -0.9
USP40-203ENST00000427112 DBR1Q9UK59 544 aaKnown RBP9.44□□□□□ -0.9
USP40-203ENST00000427112 CLRN2A0PK11 232 aa9.44□□□□□ -0.9
USP40-203ENST00000427112 LDHCP07864 332 aa9.44□□□□□ -0.9
USP40-203ENST00000427112 TM4SF1P30408 202 aa9.44□□□□□ -0.9
USP40-203ENST00000427112 MESDQ14696 234 aa9.44□□□□□ -0.9
USP40-203ENST00000427112 CATSPER3Q86XQ3 398 aa9.44□□□□□ -0.9
USP40-203ENST00000427112 ZNF473Q8WTR7 871 aaKnown RBP9.44□□□□□ -0.9
USP40-203ENST00000427112 KAT5Q92993 513 aa9.44□□□□□ -0.9
USP40-203ENST00000427112 CUL5Q93034 780 aa9.44□□□□□ -0.9
USP40-203ENST00000427112 DNAJC19Q96DA6 116 aa9.44□□□□□ -0.9
USP40-203ENST00000427112 MYCBPQ99417 103 aaPredicted RBP9.44□□□□□ -0.9
USP40-203ENST00000427112 IGSF9BQ9UPX0 1349 aa9.44□□□□□ -0.9
USP40-203ENST00000427112 ALS2Q96Q42 1657 aa9.44□□□□□ -0.9
USP40-203ENST00000427112 GCOM1H8Y6P7 765 aaPredicted RBP9.44□□□□□ -0.9
USP40-203ENST00000427112 PPP1R12BO60237 982 aaPredicted RBP9.44□□□□□ -0.9
USP40-203ENST00000427112 VIMP08670 466 aaKnown RBP9.44□□□□□ -0.9
USP40-203ENST00000427112 MYZAPP0CAP1 466 aa9.44□□□□□ -0.9
USP40-203ENST00000427112 XRCC5P13010 732 aaKnown RBP9.44□□□□□ -0.9
USP40-203ENST00000427112 UCHL3P15374 230 aa9.44□□□□□ -0.9
USP40-203ENST00000427112 NF2P35240 595 aa9.44□□□□□ -0.9
USP40-203ENST00000427112 DGKZQ13574 1117 aa9.44□□□□□ -0.9
USP40-203ENST00000427112 TUBB2AQ13885 445 aa9.44□□□□□ -0.9
USP40-203ENST00000427112 PRPF38AQ8NAV1 312 aaKnown RBP9.44□□□□□ -0.9
USP40-203ENST00000427112 TUBB2BQ9BVA1 445 aa9.44□□□□□ -0.9
USP40-203ENST00000427112 DUOX1Q9NRD9 1551 aa9.43□□□□□ -0.9
USP40-203ENST00000427112 TOGARAM1Q9Y4F4 1720 aa9.43□□□□□ -0.9
USP40-203ENST00000427112 TBCAO75347 108 aaKnown RBP9.43□□□□□ -0.9
USP40-203ENST00000427112 SKAP2O75563 359 aaPredicted RBP9.43□□□□□ -0.9
USP40-203ENST00000427112 SERPING1P05155 500 aa9.43□□□□□ -0.9
USP40-203ENST00000427112 EEF2P13639 858 aaKnown RBP9.43□□□□□ -0.9
USP40-203ENST00000427112 CYP11B2P19099 503 aa9.43□□□□□ -0.9
USP40-203ENST00000427112 FECHP22830 423 aa9.43□□□□□ -0.9
USP40-203ENST00000427112 KCNV1Q6PIU1 500 aa9.43□□□□□ -0.9
USP40-203ENST00000427112 MIGA2Q7L4E1 593 aa9.43□□□□□ -0.9
USP40-203ENST00000427112 NLRP14Q86W24 1093 aa9.43□□□□□ -0.9
USP40-203ENST00000427112 CPXCR1Q8N123 301 aa9.43□□□□□ -0.9
USP40-203ENST00000427112 GUF1Q8N442 669 aaKnown RBP9.43□□□□□ -0.9
USP40-203ENST00000427112 NEDD1Q8NHV4 660 aa9.43□□□□□ -0.9
USP40-203ENST00000427112 GDAP1Q8TB36 358 aa9.43□□□□□ -0.9
USP40-203ENST00000427112 SLC20A1Q8WUM9 679 aa9.43□□□□□ -0.9
USP40-203ENST00000427112 CABS1Q96KC9 395 aa9.43□□□□□ -0.9
USP40-203ENST00000427112 MTFR1LQ9H019 292 aa9.43□□□□□ -0.9
USP40-203ENST00000427112 PPP1R9AQ9ULJ8 1098 aa9.43□□□□□ -0.9
USP40-203ENST00000427112 PHRF1Q9P1Y6 1649 aaKnown RBP9.43□□□□□ -0.9
USP40-203ENST00000427112 A0A087WUV0 522 aaPredicted RBP9.43□□□□□ -0.9
USP40-203ENST00000427112 ANO9A1A5B4 782 aa9.43□□□□□ -0.9
USP40-203ENST00000427112 EML1O00423 815 aa9.43□□□□□ -0.9
USP40-203ENST00000427112 PLCG2P16885 1265 aa9.43□□□□□ -0.9
USP40-203ENST00000427112 CDC37Q16543 378 aaPredicted RBP9.43□□□□□ -0.9
USP40-203ENST00000427112 SBK1Q52WX2 424 aa9.43□□□□□ -0.9
USP40-203ENST00000427112 ARSHQ5FYA8 562 aa9.43□□□□□ -0.9
USP40-203ENST00000427112 LMBRD2Q68DH5 695 aaPredicted RBP9.43□□□□□ -0.9
USP40-203ENST00000427112 TEX2Q8IWB9 1127 aa9.43□□□□□ -0.9
USP40-203ENST00000427112 MMGT1Q8N4V1 131 aa9.43□□□□□ -0.9
USP40-203ENST00000427112 TCP11Q8WWU5 503 aa9.43□□□□□ -0.9
USP40-203ENST00000427112 ARHGEF26Q96DR7 871 aa9.43□□□□□ -0.9
USP40-203ENST00000427112 MTMR9Q96QG7 549 aa9.43□□□□□ -0.9
USP40-203ENST00000427112 ERVK-5Q9HDB9 667 aa9.43□□□□□ -0.9
USP40-203ENST00000427112 BAIAP2L1Q9UHR4 511 aa9.43□□□□□ -0.9
USP40-203ENST00000427112 STRCP1A6NGW2 1772 aa9.43□□□□□ -0.9
USP40-203ENST00000427112 AARSP49588 968 aaKnown RBP eCLIP9.43□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms