RNA–Protein interactions for RNA: ENST00000422491.6

USP54-204, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best) BASIC

Gene USP54, Length 2,777 nt, Biotype protein coding, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-204ENST00000422491 KRT25Q7Z3Z0 450 aa11.66□□□□□ -0.54
USP54-204ENST00000422491 DNAAF5Q86Y56 855 aa11.66□□□□□ -0.54
USP54-204ENST00000422491 PRMT1Q99873 361 aaKnown RBP11.66□□□□□ -0.54
USP54-204ENST00000422491 KANSL2Q9H9L4 492 aa11.66□□□□□ -0.54
USP54-204ENST00000422491 IL17RBQ9NRM6 502 aa11.66□□□□□ -0.54
USP54-204ENST00000422491 SUCLA2Q9P2R7 463 aaPredicted RBP11.66□□□□□ -0.54
USP54-204ENST00000422491 NAGPAQ9UK23 515 aa11.66□□□□□ -0.54
USP54-204ENST00000422491 CORO1CQ9ULV4 474 aaPredicted RBP11.66□□□□□ -0.54
USP54-204ENST00000422491 NENFQ9UMX5 172 aa11.66□□□□□ -0.54
USP54-204ENST00000422491 KIAA1551Q9HCM1 1747 aa11.66□□□□□ -0.54
USP54-204ENST00000422491 KLHL33A6NCF5 533 aa11.65□□□□□ -0.54
USP54-204ENST00000422491 TRAF5O00463 557 aa11.65□□□□□ -0.54
USP54-204ENST00000422491 CHRNDQ07001 517 aa11.65□□□□□ -0.54
USP54-204ENST00000422491 NONOQ15233 471 aaKnown RBP eCLIP11.65□□□□□ -0.54
USP54-204ENST00000422491 NEK8Q86SG6 692 aa11.65□□□□□ -0.54
USP54-204ENST00000422491 MYOCDQ8IZQ8 938 aa11.65□□□□□ -0.54
USP54-204ENST00000422491 DDX12PQ92771 950 aa11.65□□□□□ -0.54
USP54-204ENST00000422491 SAAL1Q96ER3 474 aa11.65□□□□□ -0.54
USP54-204ENST00000422491 PABPC3Q9H361 631 aaKnown RBP11.65□□□□□ -0.54
USP54-204ENST00000422491 HOMER3Q9NSC5 361 aa11.65□□□□□ -0.54
USP54-204ENST00000422491 INTS9Q9NV88 658 aaKnown RBP11.65□□□□□ -0.54
USP54-204ENST00000422491 ANKRD33BA6NCL7 494 aa11.65□□□□□ -0.54
USP54-204ENST00000422491 SNX3O60493 162 aa11.65□□□□□ -0.54
USP54-204ENST00000422491 PEX19P40855 299 aa11.65□□□□□ -0.54
USP54-204ENST00000422491 GNAQP50148 359 aa11.65□□□□□ -0.54
USP54-204ENST00000422491 DPY19L2P1Q6NXN4 242 aa11.65□□□□□ -0.54
USP54-204ENST00000422491 PEX26Q7Z412 305 aa11.65□□□□□ -0.54
USP54-204ENST00000422491 NT5DC3Q86UY8 548 aa11.65□□□□□ -0.54
USP54-204ENST00000422491 DGKHQ86XP1 1220 aa11.65□□□□□ -0.54
USP54-204ENST00000422491 RNF217Q8TC41 542 aa11.65□□□□□ -0.54
USP54-204ENST00000422491 RAD54LQ92698 747 aa11.65□□□□□ -0.54
USP54-204ENST00000422491 PRCCQ92733 491 aaPredicted RBP11.65□□□□□ -0.54
USP54-204ENST00000422491 RNF25Q96BH1 459 aaPredicted RBP11.65□□□□□ -0.54
USP54-204ENST00000422491 CEP63Q96MT8 703 aa11.65□□□□□ -0.54
USP54-204ENST00000422491 SH3GL3Q99963 347 aa11.65□□□□□ -0.54
USP54-204ENST00000422491 NR2E1Q9Y466 385 aa11.65□□□□□ -0.54
USP54-204ENST00000422491 UTP18Q9Y5J1 556 aaKnown RBP eCLIP11.65□□□□□ -0.54
USP54-204ENST00000422491 ATP8B3O60423 1300 aa11.65□□□□□ -0.55
USP54-204ENST00000422491 CCDC169A6NNP5 214 aa11.64□□□□□ -0.55
USP54-204ENST00000422491 GYG1P46976 350 aa11.64□□□□□ -0.55
USP54-204ENST00000422491 ZNF131P52739 623 aa11.64□□□□□ -0.55
USP54-204ENST00000422491 IFI35P80217 286 aaPredicted RBP11.64□□□□□ -0.55
USP54-204ENST00000422491 KLRC3Q07444 240 aa11.64□□□□□ -0.55
USP54-204ENST00000422491 BLMHQ13867 455 aa11.64□□□□□ -0.55
USP54-204ENST00000422491 DUPD1Q68J44 220 aa11.64□□□□□ -0.55
USP54-204ENST00000422491 SPICE1Q8N0Z3 855 aa11.64□□□□□ -0.55
USP54-204ENST00000422491 NEK9Q8TD19 979 aa11.64□□□□□ -0.55
USP54-204ENST00000422491 HES6Q96HZ4 224 aa11.64□□□□□ -0.55
USP54-204ENST00000422491 MTMR9Q96QG7 549 aa11.64□□□□□ -0.55
USP54-204ENST00000422491 TRIM31Q9BZY9 425 aa11.64□□□□□ -0.55
USP54-204ENST00000422491 RAB17Q9H0T7 212 aa11.64□□□□□ -0.55
USP54-204ENST00000422491 TTC7AQ9ULT0 858 aaPredicted RBP11.64□□□□□ -0.55
USP54-204ENST00000422491 ERVV-1B6SEH8 477 aa11.64□□□□□ -0.55
USP54-204ENST00000422491 IGF2BP3O00425 579 aaKnown RBP eCLIP11.64□□□□□ -0.55
USP54-204ENST00000422491 TXKP42681 527 aa11.64□□□□□ -0.55
USP54-204ENST00000422491 CCNG1P51959 295 aa11.64□□□□□ -0.55
USP54-204ENST00000422491 PMS2P54278 862 aa11.64□□□□□ -0.55
USP54-204ENST00000422491 ADCY2Q08462 1091 aa11.64□□□□□ -0.55
USP54-204ENST00000422491 ALKBH5Q6P6C2 394 aaKnown RBP11.64□□□□□ -0.55
USP54-204ENST00000422491 KCNK18Q7Z418 384 aa11.64□□□□□ -0.55
USP54-204ENST00000422491 ERICH1Q86X53 443 aa11.64□□□□□ -0.55
USP54-204ENST00000422491 MICAL1Q8TDZ2 1067 aa11.64□□□□□ -0.55
USP54-204ENST00000422491 AZI2Q9H6S1 392 aa11.64□□□□□ -0.55
USP54-204ENST00000422491 ECT2Q9H8V3 914 aa11.64□□□□□ -0.55
USP54-204ENST00000422491 ZBTB1Q9Y2K1 713 aa11.64□□□□□ -0.55
USP54-204ENST00000422491 A8MUI8 341 aa11.63□□□□□ -0.55
USP54-204ENST00000422491 GNA14O95837 355 aa11.63□□□□□ -0.55
USP54-204ENST00000422491 VIMP08670 466 aaKnown RBP11.63□□□□□ -0.55
USP54-204ENST00000422491 KRT16P08779 473 aa11.63□□□□□ -0.55
USP54-204ENST00000422491 CYP19A1P11511 503 aaPredicted RBP11.63□□□□□ -0.55
USP54-204ENST00000422491 IGHMBP2P38935 993 aaKnown RBP11.63□□□□□ -0.55
USP54-204ENST00000422491 FXR2P51116 673 aaKnown RBP eCLIP11.63□□□□□ -0.55
USP54-204ENST00000422491 PTENP60484 403 aa11.63□□□□□ -0.55
USP54-204ENST00000422491 BNIP1Q12981 228 aa11.63□□□□□ -0.55
USP54-204ENST00000422491 COASYQ13057 564 aa11.63□□□□□ -0.55
USP54-204ENST00000422491 SBK1Q52WX2 424 aa11.63□□□□□ -0.55
USP54-204ENST00000422491 TNFAIP8L3Q5GJ75 292 aa11.63□□□□□ -0.55
USP54-204ENST00000422491 PIGBQ92521 554 aa11.63□□□□□ -0.55
USP54-204ENST00000422491 DNAJC19Q96DA6 116 aa11.63□□□□□ -0.55
USP54-204ENST00000422491 NSRP1Q9H0G5 558 aaKnown RBP11.63□□□□□ -0.55
USP54-204ENST00000422491 ARPP21Q9UBL0 812 aaPredicted RBP11.63□□□□□ -0.55
USP54-204ENST00000422491 KIF13BQ9NQT8 1826 aa11.63□□□□□ -0.55
USP54-204ENST00000422491 A0A0A6YYK5 440 aaPredicted RBP11.63□□□□□ -0.55
USP54-204ENST00000422491 A6NHS1 94 aa11.63□□□□□ -0.55
USP54-204ENST00000422491 RGS16O15492 202 aaPredicted RBP11.63□□□□□ -0.55
USP54-204ENST00000422491 AGTP01019 485 aa11.63□□□□□ -0.55
USP54-204ENST00000422491 FGGP02679 453 aa11.63□□□□□ -0.55
USP54-204ENST00000422491 IL2RBP14784 551 aa11.63□□□□□ -0.55
USP54-204ENST00000422491 ABL2P42684 1182 aa11.63□□□□□ -0.55
USP54-204ENST00000422491 ORC2Q13416 577 aaPredicted RBP11.63□□□□□ -0.55
USP54-204ENST00000422491 ANKRD20A2Q5SQ80 823 aa11.63□□□□□ -0.55
USP54-204ENST00000422491 ANKRD20A1Q5TYW2 823 aa11.63□□□□□ -0.55
USP54-204ENST00000422491 ANKRD20A3Q5VUR7 823 aa11.63□□□□□ -0.55
USP54-204ENST00000422491 SUSD4Q5VX71 490 aa11.63□□□□□ -0.55
USP54-204ENST00000422491 DENND2CQ68D51 928 aa11.63□□□□□ -0.55
USP54-204ENST00000422491 DAAM2Q86T65 1068 aa11.63□□□□□ -0.55
USP54-204ENST00000422491 COL23A1Q86Y22 540 aaPredicted RBP11.63□□□□□ -0.55
USP54-204ENST00000422491 TBCKQ8TEA7 893 aa11.63□□□□□ -0.55
USP54-204ENST00000422491 NUDT12Q9BQG2 462 aa11.63□□□□□ -0.55
USP54-204ENST00000422491 ERP44Q9BS26 406 aa11.63□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 45.4 ms