RNA–Protein interactions for RNA: ENST00000421459.2

VIM-202, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 753 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-202ENST00000421459 PER2O15055 1255 aa9.27□□□□□ -0.93
VIM-202ENST00000421459 GLP2RO95838 553 aa9.27□□□□□ -0.93
VIM-202ENST00000421459 CCNE2O96020 404 aa9.27□□□□□ -0.93
VIM-202ENST00000421459 MCM5P33992 734 aa9.27□□□□□ -0.93
VIM-202ENST00000421459 NRIP1P48552 1158 aa9.27□□□□□ -0.93
VIM-202ENST00000421459 NDUFV1P49821 464 aa9.27□□□□□ -0.93
VIM-202ENST00000421459 MRE11P49959 708 aa9.27□□□□□ -0.93
VIM-202ENST00000421459 GNAQP50148 359 aa9.27□□□□□ -0.93
VIM-202ENST00000421459 NHLH1Q02575 133 aa9.27□□□□□ -0.93
VIM-202ENST00000421459 NFX1Q12986 1120 aaKnown RBP9.27□□□□□ -0.93
VIM-202ENST00000421459 FAM102BQ5T8I3 360 aa9.27□□□□□ -0.93
VIM-202ENST00000421459 CREB3L3Q68CJ9 461 aa9.27□□□□□ -0.93
VIM-202ENST00000421459 MTHFD1LQ6UB35 978 aa9.27□□□□□ -0.93
VIM-202ENST00000421459 TRMT1LQ7Z2T5 733 aaKnown RBP9.27□□□□□ -0.93
VIM-202ENST00000421459 MICU3Q86XE3 530 aa9.27□□□□□ -0.93
VIM-202ENST00000421459 POF1BQ8WVV4 589 aa9.27□□□□□ -0.93
VIM-202ENST00000421459 CDHR1Q96JP9 859 aa9.27□□□□□ -0.93
VIM-202ENST00000421459 MSLNLQ96KJ4 702 aa9.27□□□□□ -0.93
VIM-202ENST00000421459 PHOX2BQ99453 314 aa9.27□□□□□ -0.93
VIM-202ENST00000421459 CELF4Q9BZC1 486 aaKnown RBP9.27□□□□□ -0.93
VIM-202ENST00000421459 PRKAG3Q9UGI9 489 aa9.27□□□□□ -0.93
VIM-202ENST00000421459 CD207Q9UJ71 328 aa9.27□□□□□ -0.93
VIM-202ENST00000421459 BRPF3Q9ULD4 1205 aa9.27□□□□□ -0.93
VIM-202ENST00000421459 BARX2Q9UMQ3 279 aaPredicted RBP9.27□□□□□ -0.93
VIM-202ENST00000421459 GINS2Q9Y248 185 aa9.27□□□□□ -0.93
VIM-202ENST00000421459 NOC2LQ9Y3T9 749 aaKnown RBP9.27□□□□□ -0.93
VIM-202ENST00000421459 SLC12A7Q9Y666 1083 aa9.27□□□□□ -0.93
VIM-202ENST00000421459 RRN3P2A6NIE6 340 aa9.26□□□□□ -0.93
VIM-202ENST00000421459 SCG2P13521 617 aa9.26□□□□□ -0.93
VIM-202ENST00000421459 ATP4AP20648 1035 aa9.26□□□□□ -0.93
VIM-202ENST00000421459 KLRC1P26715 233 aa9.26□□□□□ -0.93
VIM-202ENST00000421459 LIFRP42702 1097 aa9.26□□□□□ -0.93
VIM-202ENST00000421459 STAT5BP51692 787 aa9.26□□□□□ -0.93
VIM-202ENST00000421459 NAPAP54920 295 aa9.26□□□□□ -0.93
VIM-202ENST00000421459 FUT2Q10981 343 aa9.26□□□□□ -0.93
VIM-202ENST00000421459 PAK2Q13177 524 aa9.26□□□□□ -0.93
VIM-202ENST00000421459 SMAD4Q13485 552 aaKnown RBP9.26□□□□□ -0.93
VIM-202ENST00000421459 NECTIN1Q15223 517 aa9.26□□□□□ -0.93
VIM-202ENST00000421459 IER5LQ5T953 404 aa9.26□□□□□ -0.93
VIM-202ENST00000421459 IER5Q5VY09 327 aa9.26□□□□□ -0.93
VIM-202ENST00000421459 NPAS4Q8IUM7 802 aa9.26□□□□□ -0.93
VIM-202ENST00000421459 CMTR2Q8IYT2 770 aaKnown RBP9.26□□□□□ -0.93
VIM-202ENST00000421459 VN1R2Q8NFZ6 395 aa9.26□□□□□ -0.93
VIM-202ENST00000421459 TMEM40Q8WWA1 233 aa9.26□□□□□ -0.93
VIM-202ENST00000421459 TMEM87BQ96K49 555 aa9.26□□□□□ -0.93
VIM-202ENST00000421459 ESYT1Q9BSJ8 1104 aa9.26□□□□□ -0.93
VIM-202ENST00000421459 PLVAPQ9BX97 442 aa9.26□□□□□ -0.93
VIM-202ENST00000421459 AZI2Q9H6S1 392 aa9.26□□□□□ -0.93
VIM-202ENST00000421459 AGO4Q9HCK5 861 aaKnown RBP9.26□□□□□ -0.93
VIM-202ENST00000421459 FAM50BQ9Y247 325 aa9.26□□□□□ -0.93
VIM-202ENST00000421459 RWDD3Q9Y3V2 267 aa9.26□□□□□ -0.93
VIM-202ENST00000421459 PCDHA2Q9Y5H9 948 aa9.26□□□□□ -0.93
VIM-202ENST00000421459 V9GY48 417 aaPredicted RBP9.26□□□□□ -0.93
VIM-202ENST00000421459 CNTNAP5Q8WYK1 1306 aa9.26□□□□□ -0.93
VIM-202ENST00000421459 IGSF9BQ9UPX0 1349 aa9.26□□□□□ -0.93
VIM-202ENST00000421459 USP34Q70CQ2 3546 aa9.26□□□□□ -0.93
VIM-202ENST00000421459 BRWD1Q9NSI6 2320 aa9.25□□□□□ -0.93
VIM-202ENST00000421459 SMIM35A0A1B0GVV1 85 aa9.25□□□□□ -0.93
VIM-202ENST00000421459 TBKBP1A7MCY6 615 aa9.25□□□□□ -0.93
VIM-202ENST00000421459 M0QZ92 97 aa9.25□□□□□ -0.93
VIM-202ENST00000421459 MAFGO15525 162 aa9.25□□□□□ -0.93
VIM-202ENST00000421459 NCK2O43639 380 aa9.25□□□□□ -0.93
VIM-202ENST00000421459 ATG7O95352 703 aa9.25□□□□□ -0.93
VIM-202ENST00000421459 CALM1P0DP23 149 aa9.25□□□□□ -0.93
VIM-202ENST00000421459 CALM2P0DP24 149 aa9.25□□□□□ -0.93
VIM-202ENST00000421459 CALM3P0DP25 149 aa9.25□□□□□ -0.93
VIM-202ENST00000421459 ERVFC1P60507 584 aa9.25□□□□□ -0.93
VIM-202ENST00000421459 KRT76Q01546 638 aa9.25□□□□□ -0.93
VIM-202ENST00000421459 APOBRQ0VD83 1088 aa9.25□□□□□ -0.93
VIM-202ENST00000421459 CEP55Q53EZ4 464 aa9.25□□□□□ -0.93
VIM-202ENST00000421459 HERC4Q5GLZ8 1057 aaPredicted RBP9.25□□□□□ -0.93
VIM-202ENST00000421459 JAKMIP3Q5VZ66 844 aa9.25□□□□□ -0.93
VIM-202ENST00000421459 ABHD15Q6UXT9 468 aa9.25□□□□□ -0.93
VIM-202ENST00000421459 PLPPR4Q7Z2D5 763 aa9.25□□□□□ -0.93
VIM-202ENST00000421459 CCDC60Q8IWA6 550 aaPredicted RBP9.25□□□□□ -0.93
VIM-202ENST00000421459 KIAA0319LQ8IZA0 1049 aa9.25□□□□□ -0.93
VIM-202ENST00000421459 TMTC2Q8N394 836 aa9.25□□□□□ -0.93
VIM-202ENST00000421459 MICAL1Q8TDZ2 1067 aa9.25□□□□□ -0.93
VIM-202ENST00000421459 P2RX5Q93086 422 aa9.25□□□□□ -0.93
VIM-202ENST00000421459 ZNF668Q96K58 619 aaPredicted RBP9.25□□□□□ -0.93
VIM-202ENST00000421459 ADAM2Q99965 735 aa9.25□□□□□ -0.93
VIM-202ENST00000421459 SDF4Q9BRK5 362 aa9.25□□□□□ -0.93
VIM-202ENST00000421459 APOL5Q9BWW9 433 aa9.25□□□□□ -0.93
VIM-202ENST00000421459 ANO3Q9BYT9 981 aa9.25□□□□□ -0.93
VIM-202ENST00000421459 ERVK-5Q9HDB9 667 aa9.25□□□□□ -0.93
VIM-202ENST00000421459 RIC8AQ9NPQ8 531 aa9.25□□□□□ -0.93
VIM-202ENST00000421459 LRFN2Q9ULH4 789 aa9.25□□□□□ -0.93
VIM-202ENST00000421459 IGKV6D-21A0A0A0MT36 114 aa9.24□□□□□ -0.93
VIM-202ENST00000421459 SMCO2A6NFE2 343 aa9.24□□□□□ -0.93
VIM-202ENST00000421459 ZBTB42B2RXF5 422 aa9.24□□□□□ -0.93
VIM-202ENST00000421459 FAM86B1E9PN63 330 aa9.24□□□□□ -0.93
VIM-202ENST00000421459 MEIS1O00470 390 aa9.24□□□□□ -0.93
VIM-202ENST00000421459 BACH1O14867 736 aa9.24□□□□□ -0.93
VIM-202ENST00000421459 RPS6KA5O75582 802 aa9.24□□□□□ -0.93
VIM-202ENST00000421459 EYA4O95677 639 aa9.24□□□□□ -0.93
VIM-202ENST00000421459 VTNP04004 478 aa9.24□□□□□ -0.93
VIM-202ENST00000421459 FAM86B2P0C5J1 330 aa9.24□□□□□ -0.93
VIM-202ENST00000421459 STAG3L1P0CL83 205 aa9.24□□□□□ -0.93
VIM-202ENST00000421459 FGFR1P11362 822 aa9.24□□□□□ -0.93
VIM-202ENST00000421459 CPA1P15085 419 aa9.24□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 14.6 ms