RNA–Protein interactions for RNA: ENST00000415188.1

USP4-203, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3 BASIC

Gene USP4, Length 1,454 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-203ENST00000415188 GRB14Q14449 540 aa16.42■□□□□ 0.22
USP4-203ENST00000415188 HYIQ5T013 277 aa16.42■□□□□ 0.22
USP4-203ENST00000415188 GPR161Q8N6U8 529 aaKnown RBP16.42■□□□□ 0.22
USP4-203ENST00000415188 NPLOC4Q8TAT6 608 aa16.42■□□□□ 0.22
USP4-203ENST00000415188 RABGGTAQ92696 567 aa16.42■□□□□ 0.22
USP4-203ENST00000415188 ATG4CQ96DT6 458 aa16.42■□□□□ 0.22
USP4-203ENST00000415188 CNOT6LQ96LI5 555 aaKnown RBP16.42■□□□□ 0.22
USP4-203ENST00000415188 SH2D4AQ9H788 454 aa16.42■□□□□ 0.22
USP4-203ENST00000415188 PSTPIP2Q9H939 334 aa16.42■□□□□ 0.22
USP4-203ENST00000415188 FAM53CQ9NYF3 392 aa16.42■□□□□ 0.22
USP4-203ENST00000415188 DDX25Q9UHL0 483 aaKnown RBP16.42■□□□□ 0.22
USP4-203ENST00000415188 OGDHLQ9ULD0 1010 aa16.42■□□□□ 0.22
USP4-203ENST00000415188 SYNPO2Q9UMS6 1093 aa16.42■□□□□ 0.22
USP4-203ENST00000415188 IVNS1ABPQ9Y6Y0 642 aa16.42■□□□□ 0.22
USP4-203ENST00000415188 RLFQ13129 1914 aa16.41■□□□□ 0.22
USP4-203ENST00000415188 ATP8B1O43520 1251 aa16.41■□□□□ 0.22
USP4-203ENST00000415188 EDIL3O43854 480 aa16.41■□□□□ 0.22
USP4-203ENST00000415188 PPP1R11O60927 126 aaPredicted RBP16.41■□□□□ 0.22
USP4-203ENST00000415188 USP11P51784 963 aa16.41■□□□□ 0.22
USP4-203ENST00000415188 LRRC63Q05C16 580 aa16.41■□□□□ 0.22
USP4-203ENST00000415188 STK4Q13043 487 aa16.41■□□□□ 0.22
USP4-203ENST00000415188 AP3B2Q13367 1082 aa16.41■□□□□ 0.22
USP4-203ENST00000415188 MEA1Q16626 185 aa16.41■□□□□ 0.22
USP4-203ENST00000415188 FKBP15Q5T1M5 1219 aa16.41■□□□□ 0.22
USP4-203ENST00000415188 ANKRD40Q6AI12 368 aa16.41■□□□□ 0.22
USP4-203ENST00000415188 RSRC2Q7L4I2 434 aaKnown RBP16.41■□□□□ 0.22
USP4-203ENST00000415188 CEP112Q8N8E3 955 aa16.41■□□□□ 0.22
USP4-203ENST00000415188 ANKLE1Q8NAG6 615 aa16.41■□□□□ 0.22
USP4-203ENST00000415188 SNX29Q8TEQ0 813 aa16.41■□□□□ 0.22
USP4-203ENST00000415188 GOLGA1Q92805 767 aa16.41■□□□□ 0.22
USP4-203ENST00000415188 ERGIC2Q96RQ1 377 aa16.41■□□□□ 0.22
USP4-203ENST00000415188 SPATC1LQ9H0A9 340 aa16.41■□□□□ 0.22
USP4-203ENST00000415188 NT5C3AQ9H0P0 336 aa16.41■□□□□ 0.22
USP4-203ENST00000415188 NR2E3Q9Y5X4 410 aa16.41■□□□□ 0.22
USP4-203ENST00000415188 STK24Q9Y6E0 443 aa16.41■□□□□ 0.22
USP4-203ENST00000415188 TTC26A0AVF1 554 aa16.4■□□□□ 0.22
USP4-203ENST00000415188 CTAGE9A4FU28 777 aa16.4■□□□□ 0.22
USP4-203ENST00000415188 MYMKA6NI61 221 aa16.4■□□□□ 0.22
USP4-203ENST00000415188 EVI5O60447 810 aa16.4■□□□□ 0.22
USP4-203ENST00000415188 PRKCSHP14314 528 aaPredicted RBP16.4■□□□□ 0.22
USP4-203ENST00000415188 ERCC3P19447 782 aa16.4■□□□□ 0.22
USP4-203ENST00000415188 MTIF2P46199 727 aaKnown RBP16.4■□□□□ 0.22
USP4-203ENST00000415188 CDK17Q00537 523 aa16.4■□□□□ 0.22
USP4-203ENST00000415188 PLS1Q14651 629 aa16.4■□□□□ 0.22
USP4-203ENST00000415188 BMS1Q14692 1282 aaKnown RBP16.4■□□□□ 0.22
USP4-203ENST00000415188 KRT222Q8N1A0 295 aa16.4■□□□□ 0.22
USP4-203ENST00000415188 KIAA0895Q8NCT3 520 aa16.4■□□□□ 0.22
USP4-203ENST00000415188 LRRN4CLQ8ND94 238 aa16.4■□□□□ 0.22
USP4-203ENST00000415188 MBOAT7Q96N66 472 aa16.4■□□□□ 0.22
USP4-203ENST00000415188 ARID3AQ99856 593 aa16.4■□□□□ 0.22
USP4-203ENST00000415188 FBXO28Q9NVF7 368 aa16.4■□□□□ 0.22
USP4-203ENST00000415188 ZNHIT6Q9NWK9 470 aaKnown RBP16.4■□□□□ 0.22
USP4-203ENST00000415188 CDC23Q9UJX2 597 aa16.4■□□□□ 0.22
USP4-203ENST00000415188 EPN1Q9Y6I3 576 aaPredicted RBP16.4■□□□□ 0.22
USP4-203ENST00000415188 TRIOBPQ9H2D6 2365 aa16.39■□□□□ 0.22
USP4-203ENST00000415188 A0A0G2JMZ2 1700 aa16.39■□□□□ 0.22
USP4-203ENST00000415188 CYP3A7-CYP3A51PA0A087WV96 503 aa16.39■□□□□ 0.21
USP4-203ENST00000415188 POTEB2H3BUK9 544 aa16.39■□□□□ 0.21
USP4-203ENST00000415188 WDR46O15213 610 aaKnown RBP16.39■□□□□ 0.21
USP4-203ENST00000415188 RAD21O60216 631 aa16.39■□□□□ 0.21
USP4-203ENST00000415188 CYP3A7P24462 503 aa16.39■□□□□ 0.21
USP4-203ENST00000415188 CBX1P83916 185 aa16.39■□□□□ 0.21
USP4-203ENST00000415188 ZBED6P86452 979 aa16.39■□□□□ 0.21
USP4-203ENST00000415188 EHHADHQ08426 723 aa16.39■□□□□ 0.21
USP4-203ENST00000415188 MCM6Q14566 821 aa16.39■□□□□ 0.21
USP4-203ENST00000415188 SLFN13Q68D06 897 aa16.39■□□□□ 0.21
USP4-203ENST00000415188 LHX8Q68G74 356 aa16.39■□□□□ 0.21
USP4-203ENST00000415188 TTBK2Q6IQ55 1244 aa16.39■□□□□ 0.21
USP4-203ENST00000415188 CREBRFQ8IUR6 639 aa16.39■□□□□ 0.21
USP4-203ENST00000415188 CCDC170Q8IYT3 715 aa16.39■□□□□ 0.21
USP4-203ENST00000415188 EHBP1Q8NDI1 1231 aa16.39■□□□□ 0.21
USP4-203ENST00000415188 GMCL1P1Q8NEA9 526 aa16.39■□□□□ 0.21
USP4-203ENST00000415188 NAPGQ99747 312 aaPredicted RBP16.39■□□□□ 0.21
USP4-203ENST00000415188 TSG101Q99816 390 aa16.39■□□□□ 0.21
USP4-203ENST00000415188 TTYH3Q9C0H2 523 aa16.39■□□□□ 0.21
USP4-203ENST00000415188 HAUS4Q9H6D7 363 aa16.39■□□□□ 0.21
USP4-203ENST00000415188 LZTFL1Q9NQ48 299 aa16.39■□□□□ 0.21
USP4-203ENST00000415188 ALPK3Q96L96 1907 aa16.39■□□□□ 0.21
USP4-203ENST00000415188 B4DLN1 442 aa16.38■□□□□ 0.21
USP4-203ENST00000415188 NDUFA10O95299 355 aa16.38■□□□□ 0.21
USP4-203ENST00000415188 HOXC6P09630 235 aa16.38■□□□□ 0.21
USP4-203ENST00000415188 ADORA2AP29274 412 aa16.38■□□□□ 0.21
USP4-203ENST00000415188 CYP2C19P33261 490 aa16.38■□□□□ 0.21
USP4-203ENST00000415188 CYLC1P35663 651 aaPredicted RBP16.38■□□□□ 0.21
USP4-203ENST00000415188 ARHGAP25P42331 645 aa16.38■□□□□ 0.21
USP4-203ENST00000415188 SLC1A4P43007 532 aa16.38■□□□□ 0.21
USP4-203ENST00000415188 KRT83P78385 493 aa16.38■□□□□ 0.21
USP4-203ENST00000415188 GABPB1Q06547 395 aaPredicted RBP16.38■□□□□ 0.21
USP4-203ENST00000415188 TBC1D8BQ0IIM8 1120 aa16.38■□□□□ 0.21
USP4-203ENST00000415188 UBE2SQ16763 222 aa16.38■□□□□ 0.21
USP4-203ENST00000415188 QRICH1Q2TAL8 776 aa16.38■□□□□ 0.21
USP4-203ENST00000415188 ZNF569Q5MCW4 686 aa16.38■□□□□ 0.21
USP4-203ENST00000415188 MFSD14CQ5VZR4 134 aa16.38■□□□□ 0.21
USP4-203ENST00000415188 ACRBPQ8NEB7 543 aa16.38■□□□□ 0.21
USP4-203ENST00000415188 GMCL1Q96IK5 515 aa16.38■□□□□ 0.21
USP4-203ENST00000415188 NOC4LQ9BVI4 516 aaKnown RBP16.38■□□□□ 0.21
USP4-203ENST00000415188 C11orf49Q9H6J7 331 aa16.38■□□□□ 0.21
USP4-203ENST00000415188 RANBP2P49792 3224 aaKnown RBP16.38■□□□□ 0.21
USP4-203ENST00000415188 RNF225M0QZC1 329 aaPredicted RBP16.37■□□□□ 0.21
USP4-203ENST00000415188 PES1O00541 588 aaKnown RBP16.37■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms