RNA–Protein interactions for RNA: ENST00000409954.6

MCF2L-210, Transcript of MCF.2 cell line derived transforming sequence like, humanhuman

TSL 5

Gene MCF2L, Length 574 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2L-210ENST00000409954 RNF26Q9BY78 433 aaPredicted RBP16.5■□□□□ 0.23
MCF2L-210ENST00000409954 CELF4Q9BZC1 486 aaKnown RBP16.5■□□□□ 0.23
MCF2L-210ENST00000409954 FAM49AQ9H0Q0 323 aaPredicted RBP16.5■□□□□ 0.23
MCF2L-210ENST00000409954 RNF216Q9NWF9 866 aaPredicted RBP16.5■□□□□ 0.23
MCF2L-210ENST00000409954 TRPV2Q9Y5S1 764 aa16.5■□□□□ 0.23
MCF2L-210ENST00000409954 KDM3AQ9Y4C1 1321 aa16.49■□□□□ 0.23
MCF2L-210ENST00000409954 IFNAR1P17181 557 aa16.49■□□□□ 0.23
MCF2L-210ENST00000409954 BMPR1AP36894 532 aa16.49■□□□□ 0.23
MCF2L-210ENST00000409954 SETQ01105 290 aaPredicted RBP16.49■□□□□ 0.23
MCF2L-210ENST00000409954 NTRK3Q16288 839 aa16.49■□□□□ 0.23
MCF2L-210ENST00000409954 ZNF746Q6NUN9 644 aaPredicted RBP16.49■□□□□ 0.23
MCF2L-210ENST00000409954 SWSAP1Q6NVH7 229 aa16.49■□□□□ 0.23
MCF2L-210ENST00000409954 CCDC148Q8NFR7 591 aa16.49■□□□□ 0.23
MCF2L-210ENST00000409954 ATP8B4Q8TF62 1192 aa16.49■□□□□ 0.23
MCF2L-210ENST00000409954 ZNF577Q9BSK1 485 aa16.49■□□□□ 0.23
MCF2L-210ENST00000409954 ZNF302Q9NR11 478 aa16.49■□□□□ 0.23
MCF2L-210ENST00000409954 SH3GLB2Q9NR46 395 aa16.49■□□□□ 0.23
MCF2L-210ENST00000409954 TCEAL9Q9UHQ7 104 aa16.49■□□□□ 0.23
MCF2L-210ENST00000409954 EYSQ5T1H1 3165 aa16.49■□□□□ 0.23
MCF2L-210ENST00000409954 IGLV3-22A0A075B6J6 115 aa16.48■□□□□ 0.23
MCF2L-210ENST00000409954 C5orf67F2Z3F1 127 aa16.48■□□□□ 0.23
MCF2L-210ENST00000409954 NCK2O43639 380 aa16.48■□□□□ 0.23
MCF2L-210ENST00000409954 CCNE2O96020 404 aa16.48■□□□□ 0.23
MCF2L-210ENST00000409954 STAG3L1P0CL83 205 aa16.48■□□□□ 0.23
MCF2L-210ENST00000409954 PDIA3P30101 505 aaKnown RBP16.48■□□□□ 0.23
MCF2L-210ENST00000409954 CD52P31358 61 aa16.48■□□□□ 0.23
MCF2L-210ENST00000409954 CIITAP33076 1130 aa16.48■□□□□ 0.23
MCF2L-210ENST00000409954 USP11P51784 963 aa16.48■□□□□ 0.23
MCF2L-210ENST00000409954 KRT76Q01546 638 aa16.48■□□□□ 0.23
MCF2L-210ENST00000409954 TIGD5Q53EQ6 642 aa16.48■□□□□ 0.23
MCF2L-210ENST00000409954 PDXDC2PQ6P474 469 aa16.48■□□□□ 0.23
MCF2L-210ENST00000409954 RUFY3Q7L099 469 aa16.48■□□□□ 0.23
MCF2L-210ENST00000409954 SMAP1Q8IYB5 467 aaPredicted RBP16.48■□□□□ 0.23
MCF2L-210ENST00000409954 BANK1Q8NDB2 785 aa16.48■□□□□ 0.23
MCF2L-210ENST00000409954 ZNF689Q96CS4 500 aaPredicted RBP16.48■□□□□ 0.23
MCF2L-210ENST00000409954 C22orf23Q9BZE7 217 aa16.48■□□□□ 0.23
MCF2L-210ENST00000409954 LMAN2LQ9H0V9 348 aa16.48■□□□□ 0.23
MCF2L-210ENST00000409954 UBE2ZQ9H832 354 aaPredicted RBP16.48■□□□□ 0.23
MCF2L-210ENST00000409954 AGO3Q9H9G7 860 aaKnown RBP16.48■□□□□ 0.23
MCF2L-210ENST00000409954 PADI3Q9ULW8 664 aa16.48■□□□□ 0.23
MCF2L-210ENST00000409954 PCDHA10Q9Y5I2 948 aa16.48■□□□□ 0.23
MCF2L-210ENST00000409954 COL1A2P08123 1366 aa16.48■□□□□ 0.23
MCF2L-210ENST00000409954 NID2Q14112 1375 aa16.48■□□□□ 0.23
MCF2L-210ENST00000409954 CHD7Q9P2D1 2997 aa16.47■□□□□ 0.23
MCF2L-210ENST00000409954 DDX39AO00148 427 aaKnown RBP16.47■□□□□ 0.23
MCF2L-210ENST00000409954 DGKIO75912 1065 aa16.47■□□□□ 0.23
MCF2L-210ENST00000409954 BTG3Q14201 252 aaPredicted RBP16.47■□□□□ 0.23
MCF2L-210ENST00000409954 PUS10Q3MIT2 529 aaKnown RBP16.47■□□□□ 0.23
MCF2L-210ENST00000409954 RTN4RL1Q86UN2 441 aaPredicted RBP16.47■□□□□ 0.23
MCF2L-210ENST00000409954 BBXQ8WY36 941 aaPredicted RBP16.47■□□□□ 0.23
MCF2L-210ENST00000409954 CLP1Q92989 425 aaKnown RBP16.47■□□□□ 0.23
MCF2L-210ENST00000409954 PHKBQ93100 1093 aa16.47■□□□□ 0.23
MCF2L-210ENST00000409954 C11orf84Q9BUA3 381 aaPredicted RBP16.47■□□□□ 0.23
MCF2L-210ENST00000409954 PLVAPQ9BX97 442 aa16.47■□□□□ 0.23
MCF2L-210ENST00000409954 C1QTNF1Q9BXJ1 281 aa16.47■□□□□ 0.23
MCF2L-210ENST00000409954 ZSWIM6Q9HCJ5 1215 aa16.47■□□□□ 0.23
MCF2L-210ENST00000409954 MAFBQ9Y5Q3 323 aaPredicted RBP16.47■□□□□ 0.23
MCF2L-210ENST00000409954 IGSF9BQ9UPX0 1349 aa16.46■□□□□ 0.23
MCF2L-210ENST00000409954 VCANP13611 3396 aa16.46■□□□□ 0.23
MCF2L-210ENST00000409954 PSAPP07602 524 aa16.46■□□□□ 0.23
MCF2L-210ENST00000409954 PAK2Q13177 524 aa16.46■□□□□ 0.23
MCF2L-210ENST00000409954 LEXMQ3ZCV2 418 aa16.46■□□□□ 0.23
MCF2L-210ENST00000409954 PRR16Q569H4 304 aa16.46■□□□□ 0.23
MCF2L-210ENST00000409954 NAALADL2Q58DX5 795 aa16.46■□□□□ 0.23
MCF2L-210ENST00000409954 NPAS4Q8IUM7 802 aa16.46■□□□□ 0.23
MCF2L-210ENST00000409954 CCDC60Q8IWA6 550 aaPredicted RBP16.46■□□□□ 0.23
MCF2L-210ENST00000409954 CKAP2LQ8IYA6 745 aa16.46■□□□□ 0.23
MCF2L-210ENST00000409954 TRIM22Q8IYM9 498 aa16.46■□□□□ 0.23
MCF2L-210ENST00000409954 KIAA0319LQ8IZA0 1049 aa16.46■□□□□ 0.23
MCF2L-210ENST00000409954 ZNF710Q8N1W2 664 aa16.46■□□□□ 0.23
MCF2L-210ENST00000409954 TRAPPC12Q8WVT3 735 aa16.46■□□□□ 0.23
MCF2L-210ENST00000409954 ZNF274Q96GC6 653 aaPredicted RBP16.46■□□□□ 0.23
MCF2L-210ENST00000409954 SLC26A6Q9BXS9 759 aa16.46■□□□□ 0.23
MCF2L-210ENST00000409954 TM6SF1Q9BZW5 370 aa16.46■□□□□ 0.23
MCF2L-210ENST00000409954 NRBP2Q9NSY0 501 aa16.46■□□□□ 0.23
MCF2L-210ENST00000409954 CEP131Q9UPN4 1083 aa16.46■□□□□ 0.23
MCF2L-210ENST00000409954 CYP46A1Q9Y6A2 500 aa16.46■□□□□ 0.23
MCF2L-210ENST00000409954 KAT6AQ92794 2004 aa16.46■□□□□ 0.23
MCF2L-210ENST00000409954 GPR182O15218 404 aa16.45■□□□□ 0.22
MCF2L-210ENST00000409954 MAGEB2O15479 319 aa16.45■□□□□ 0.22
MCF2L-210ENST00000409954 NLRP5P59047 1200 aa16.45■□□□□ 0.22
MCF2L-210ENST00000409954 CCT2P78371 535 aaKnown RBP16.45■□□□□ 0.22
MCF2L-210ENST00000409954 SSRP1Q08945 709 aaKnown RBP16.45■□□□□ 0.22
MCF2L-210ENST00000409954 TMEM62Q0P6H9 643 aa16.45■□□□□ 0.22
MCF2L-210ENST00000409954 CPLX2Q6PUV4 134 aaKnown RBP16.45■□□□□ 0.22
MCF2L-210ENST00000409954 FAM177A1Q8N128 213 aaPredicted RBP16.45■□□□□ 0.22
MCF2L-210ENST00000409954 CRIPAKQ8N1N5 446 aa16.45■□□□□ 0.22
MCF2L-210ENST00000409954 ZBTB10Q96DT7 871 aa16.45■□□□□ 0.22
MCF2L-210ENST00000409954 NECAB3Q96P71 396 aaPredicted RBP16.45■□□□□ 0.22
MCF2L-210ENST00000409954 NSUN3Q9H649 340 aaKnown RBP16.45■□□□□ 0.22
MCF2L-210ENST00000409954 ADGRA3Q8IWK6 1321 aa16.45■□□□□ 0.22
MCF2L-210ENST00000409954 RBAK-RBAKDNI3L0D1 243 aa16.44■□□□□ 0.22
MCF2L-210ENST00000409954 RPS6KA5O75582 802 aa16.44■□□□□ 0.22
MCF2L-210ENST00000409954 ATP4AP20648 1035 aa16.44■□□□□ 0.22
MCF2L-210ENST00000409954 CTNNB1P35222 781 aa16.44■□□□□ 0.22
MCF2L-210ENST00000409954 NFX1Q12986 1120 aaKnown RBP16.44■□□□□ 0.22
MCF2L-210ENST00000409954 CMTR2Q8IYT2 770 aaKnown RBP16.44■□□□□ 0.22
MCF2L-210ENST00000409954 P2RX5Q93086 422 aa16.44■□□□□ 0.22
MCF2L-210ENST00000409954 PABPC5Q96DU9 382 aaKnown RBP16.44■□□□□ 0.22
MCF2L-210ENST00000409954 FAM167AQ96KS9 214 aa16.44■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms