RNA–Protein interactions for RNA: ENST00000399489.5

HMGB1-204, Transcript of high mobility group box 1, humanhuman

TSL 1 (best) BASIC

Gene HMGB1, Length 1,727 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-204ENST00000399489 SDR16C5Q8N3Y7 309 aa5.06□□□□□ -1.6
HMGB1-204ENST00000399489 ARHGEF39Q8N4T4 335 aa5.06□□□□□ -1.6
HMGB1-204ENST00000399489 CLUHP3Q96NS8 147 aa5.06□□□□□ -1.6
HMGB1-204ENST00000399489 CDC5LQ99459 802 aaKnown RBP5.06□□□□□ -1.6
HMGB1-204ENST00000399489 SPATA25Q9BR10 227 aa5.06□□□□□ -1.6
HMGB1-204ENST00000399489 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP5.06□□□□□ -1.68e-6■□□□□ 8.4
HMGB1-204ENST00000399489 NTMQ9P121 344 aa5.06□□□□□ -1.6
HMGB1-204ENST00000399489 TRHDEQ9UKU6 1024 aa5.06□□□□□ -1.6
HMGB1-204ENST00000399489 AKT3Q9Y243 479 aa5.06□□□□□ -1.6
HMGB1-204ENST00000399489 ANO9A1A5B4 782 aa5.06□□□□□ -1.6
HMGB1-204ENST00000399489 ANKRD34BA5PLL1 514 aa5.06□□□□□ -1.6
HMGB1-204ENST00000399489 K7ESM1 405 aa5.06□□□□□ -1.6
HMGB1-204ENST00000399489 PLA2G1BP04054 148 aaKnown RBP5.06□□□□□ -1.6
HMGB1-204ENST00000399489 STAT4Q14765 748 aa5.06□□□□□ -1.6
HMGB1-204ENST00000399489 SLC10A6Q3KNW5 377 aa5.06□□□□□ -1.6
HMGB1-204ENST00000399489 VWA3BQ502W6 1294 aa5.06□□□□□ -1.6
HMGB1-204ENST00000399489 RINLQ6ZS11 566 aa5.06□□□□□ -1.6
HMGB1-204ENST00000399489 CPNE8Q86YQ8 564 aa5.06□□□□□ -1.6
HMGB1-204ENST00000399489 DCP2Q8IU60 420 aaKnown RBP5.06□□□□□ -1.6
HMGB1-204ENST00000399489 LRRC47Q8N1G4 583 aaKnown RBP5.06□□□□□ -1.6
HMGB1-204ENST00000399489 PPM1KQ8N3J5 372 aa5.06□□□□□ -1.6
HMGB1-204ENST00000399489 VPS37AQ8NEZ2 397 aa5.06□□□□□ -1.6
HMGB1-204ENST00000399489 LEO1Q8WVC0 666 aaPredicted RBP5.06□□□□□ -1.6
HMGB1-204ENST00000399489 CPA5Q8WXQ8 436 aa5.06□□□□□ -1.6
HMGB1-204ENST00000399489 KISS1RQ969F8 398 aaPredicted RBP5.06□□□□□ -1.6
HMGB1-204ENST00000399489 EXOC2Q96KP1 924 aa5.06□□□□□ -1.6
HMGB1-204ENST00000399489 AP5M1Q9H0R1 490 aa5.06□□□□□ -1.6
HMGB1-204ENST00000399489 PCDHB10Q9UN67 800 aa5.06□□□□□ -1.6
HMGB1-204ENST00000399489 TCERG1O14776 1098 aaKnown RBP5.05□□□□□ -1.6
HMGB1-204ENST00000399489 SDSP20132 328 aa5.05□□□□□ -1.6
HMGB1-204ENST00000399489 SARSP49591 514 aaKnown RBP5.05□□□□□ -1.6
HMGB1-204ENST00000399489 GEMIN4P57678 1058 aaKnown RBP5.05□□□□□ -1.6
HMGB1-204ENST00000399489 HTRA3P83110 453 aa5.05□□□□□ -1.6
HMGB1-204ENST00000399489 CACNB2Q08289 660 aaPredicted RBP5.05□□□□□ -1.6
HMGB1-204ENST00000399489 RTP5Q14D33 572 aa5.05□□□□□ -1.6
HMGB1-204ENST00000399489 ZNF827Q17R98 1081 aa5.05□□□□□ -1.6
HMGB1-204ENST00000399489 SYDE2Q5VT97 1194 aa5.05□□□□□ -1.6
HMGB1-204ENST00000399489 FOXB2Q5VYV0 432 aa5.05□□□□□ -1.6
HMGB1-204ENST00000399489 KIAA1211LQ6NV74 962 aa5.05□□□□□ -1.6
HMGB1-204ENST00000399489 CNNM4Q6P4Q7 775 aa5.05□□□□□ -1.6
HMGB1-204ENST00000399489 VHLLQ6RSH7 139 aa5.05□□□□□ -1.6
HMGB1-204ENST00000399489 SPATS2Q86XZ4 545 aaKnown RBP5.05□□□□□ -1.6
HMGB1-204ENST00000399489 CARFQ8N187 725 aa5.05□□□□□ -1.6
HMGB1-204ENST00000399489 TRMT2BQ96GJ1 504 aaKnown RBP5.05□□□□□ -1.6
HMGB1-204ENST00000399489 ELAC2Q9BQ52 826 aaKnown RBP5.05□□□□□ -1.6
HMGB1-204ENST00000399489 HERPUD2Q9BSE4 406 aa5.05□□□□□ -1.6
HMGB1-204ENST00000399489 PUS7LQ9H0K6 701 aaKnown RBP5.05□□□□□ -1.6
HMGB1-204ENST00000399489 GULP1Q9UBP9 304 aa5.05□□□□□ -1.6
HMGB1-204ENST00000399489 TNKSO95271 1327 aa5.04□□□□□ -1.6
HMGB1-204ENST00000399489 PRRT4C9JH25 899 aa5.04□□□□□ -1.6
HMGB1-204ENST00000399489 MC3RP41968 323 aa5.04□□□□□ -1.6
HMGB1-204ENST00000399489 HALP42357 657 aa5.04□□□□□ -1.6
HMGB1-204ENST00000399489 PPM1FP49593 454 aaPredicted RBP5.04□□□□□ -1.6
HMGB1-204ENST00000399489 ZNF143P52747 638 aaPredicted RBP5.04□□□□□ -1.6
HMGB1-204ENST00000399489 ZNF280AP59817 542 aaPredicted RBP5.04□□□□□ -1.6
HMGB1-204ENST00000399489 DHCR24Q15392 516 aa5.04□□□□□ -1.6
HMGB1-204ENST00000399489 TOGARAM2Q6ZUX3 1019 aa5.04□□□□□ -1.6
HMGB1-204ENST00000399489 TPH2Q8IWU9 490 aa5.04□□□□□ -1.6
HMGB1-204ENST00000399489 SMARCC2Q8TAQ2 1214 aa5.04□□□□□ -1.6
HMGB1-204ENST00000399489 DDX11Q96FC9 970 aa5.04□□□□□ -1.6
HMGB1-204ENST00000399489 GPR20Q99678 358 aa5.04□□□□□ -1.6
HMGB1-204ENST00000399489 MCMBPQ9BTE3 642 aa5.04□□□□□ -1.6
HMGB1-204ENST00000399489 RXFP1Q9HBX9 757 aa5.04□□□□□ -1.6
HMGB1-204ENST00000399489 PLCB1Q9NQ66 1216 aa5.04□□□□□ -1.6
HMGB1-204ENST00000399489 IPPQ9Y573 584 aa5.04□□□□□ -1.6
HMGB1-204ENST00000399489 A0A1B0GTL3 188 aa5.03□□□□□ -1.6
HMGB1-204ENST00000399489 APAF1O14727 1248 aa5.03□□□□□ -1.6
HMGB1-204ENST00000399489 BRINP1O60477 761 aa5.03□□□□□ -1.6
HMGB1-204ENST00000399489 NBNO60934 754 aa5.03□□□□□ -1.6
HMGB1-204ENST00000399489 FUCA1P04066 466 aa5.03□□□□□ -1.6
HMGB1-204ENST00000399489 CYP2C8P10632 490 aa5.03□□□□□ -1.6
HMGB1-204ENST00000399489 PHKG2P15735 406 aa5.03□□□□□ -1.6
HMGB1-204ENST00000399489 GBX1Q14549 363 aa5.03□□□□□ -1.6
HMGB1-204ENST00000399489 SLC4A8Q2Y0W8 1093 aa5.03□□□□□ -1.6
HMGB1-204ENST00000399489 PKN3Q6P5Z2 889 aa5.03□□□□□ -1.6
HMGB1-204ENST00000399489 ADGRG2Q8IZP9 1017 aa5.03□□□□□ -1.6
HMGB1-204ENST00000399489 CNTD1Q8N815 330 aa5.03□□□□□ -1.6
HMGB1-204ENST00000399489 COG1Q8WTW3 980 aa5.03□□□□□ -1.6
HMGB1-204ENST00000399489 ATXN2LQ8WWM7 1075 aaKnown RBP5.03□□□□□ -1.6
HMGB1-204ENST00000399489 DDX1Q92499 740 aaKnown RBP5.03□□□□□ -1.6
HMGB1-204ENST00000399489 GJA10Q969M2 543 aa5.03□□□□□ -1.6
HMGB1-204ENST00000399489 PPP1R14AQ96A00 147 aa5.03□□□□□ -1.6
HMGB1-204ENST00000399489 SELENOOQ9BVL4 669 aa5.03□□□□□ -1.6
HMGB1-204ENST00000399489 SPEF1Q9Y4P9 236 aa5.03□□□□□ -1.6
HMGB1-204ENST00000399489 DYTNA2CJ06 578 aa5.03□□□□□ -1.6
HMGB1-204ENST00000399489 KCNH1O95259 989 aa5.03□□□□□ -1.6
HMGB1-204ENST00000399489 U2AF1L5P0DN76 240 aaPredicted RBP5.03□□□□□ -1.6
HMGB1-204ENST00000399489 U2AF1Q01081 240 aaKnown RBP eCLIP5.03□□□□□ -1.63e-11■■■■□ 22.7
HMGB1-204ENST00000399489 KRT72Q14CN4 511 aa5.03□□□□□ -1.6
HMGB1-204ENST00000399489 NCAPHQ15003 741 aa5.03□□□□□ -1.6
HMGB1-204ENST00000399489 SAFBQ15424 915 aaKnown RBP eCLIP5.03□□□□□ -1.6
HMGB1-204ENST00000399489 CCDC93Q567U6 631 aa5.03□□□□□ -1.6
HMGB1-204ENST00000399489 ZC3H18Q86VM9 953 aaKnown RBP5.03□□□□□ -1.6
HMGB1-204ENST00000399489 CCDC89Q8N998 374 aa5.03□□□□□ -1.6
HMGB1-204ENST00000399489 NGDNQ8NEJ9 315 aaKnown RBP5.03□□□□□ -1.6
HMGB1-204ENST00000399489 KLHL6Q8WZ60 621 aa5.03□□□□□ -1.6
HMGB1-204ENST00000399489 ZBTB8AQ96BR9 441 aa5.03□□□□□ -1.6
HMGB1-204ENST00000399489 BCAS3Q9H6U6 928 aa5.03□□□□□ -1.6
HMGB1-204ENST00000399489 IP6K2Q9UHH9 426 aa5.03□□□□□ -1.6
HMGB1-204ENST00000399489 RPGRIP1LQ68CZ1 1315 aa5.02□□□□□ -1.61
Retrieved 100 of 20,778 RNA–protein pairs in 20.8 ms