RNA–Protein interactions for RNA: ENST00000398452.6

SKA1-202, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SKA1, Length 979 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-202ENST00000398452 CCDC62Q6P9F0 684 aa15.86■□□□□ 0.13
SKA1-202ENST00000398452 B3GNT9Q6UX72 402 aa15.86■□□□□ 0.13
SKA1-202ENST00000398452 OTUD6AQ7L8S5 288 aa15.86■□□□□ 0.13
SKA1-202ENST00000398452 CKAP2LQ8IYA6 745 aa15.86■□□□□ 0.13
SKA1-202ENST00000398452 OR6J1Q8NGC5 347 aa15.86■□□□□ 0.13
SKA1-202ENST00000398452 RAD54LQ92698 747 aa15.86■□□□□ 0.13
SKA1-202ENST00000398452 SMARCE1Q969G3 411 aa15.86■□□□□ 0.13
SKA1-202ENST00000398452 PNMA5Q96PV4 448 aa15.86■□□□□ 0.13
SKA1-202ENST00000398452 HSD17B14Q9BPX1 270 aa15.86■□□□□ 0.13
SKA1-202ENST00000398452 AP5M1Q9H0R1 490 aa15.86■□□□□ 0.13
SKA1-202ENST00000398452 ZNF302Q9NR11 478 aa15.86■□□□□ 0.13
SKA1-202ENST00000398452 RGL1Q9NZL6 768 aa15.86■□□□□ 0.13
SKA1-202ENST00000398452 GABBR1Q9UBS5 961 aa15.86■□□□□ 0.13
SKA1-202ENST00000398452 HTTP42858 3142 aa15.86■□□□□ 0.13
SKA1-202ENST00000398452 A0A087X0B3 334 aa15.85■□□□□ 0.13
SKA1-202ENST00000398452 GTPBP6O43824 516 aaPredicted RBP15.85■□□□□ 0.13
SKA1-202ENST00000398452 ADCY3O60266 1144 aa15.85■□□□□ 0.13
SKA1-202ENST00000398452 SLITRK3O94933 977 aa15.85■□□□□ 0.13
SKA1-202ENST00000398452 ARIH2O95376 493 aa15.85■□□□□ 0.13
SKA1-202ENST00000398452 CCNE2O96020 404 aa15.85■□□□□ 0.13
SKA1-202ENST00000398452 AKR1A1P14550 325 aa15.85■□□□□ 0.13
SKA1-202ENST00000398452 CNGA1P29973 690 aa15.85■□□□□ 0.13
SKA1-202ENST00000398452 SP2Q02086 613 aa15.85■□□□□ 0.13
SKA1-202ENST00000398452 E2F4Q16254 413 aa15.85■□□□□ 0.13
SKA1-202ENST00000398452 PRAMEF19Q5SWL8 479 aa15.85■□□□□ 0.13
SKA1-202ENST00000398452 SWSAP1Q6NVH7 229 aa15.85■□□□□ 0.13
SKA1-202ENST00000398452 GLG1Q92896 1179 aa15.85■□□□□ 0.13
SKA1-202ENST00000398452 PAGE5Q96GU1 130 aa15.85■□□□□ 0.13
SKA1-202ENST00000398452 SPC25Q9HBM1 224 aa15.85■□□□□ 0.13
SKA1-202ENST00000398452 FLRT1Q9NZU1 646 aa15.85■□□□□ 0.13
SKA1-202ENST00000398452 PCDH10Q9P2E7 1040 aa15.85■□□□□ 0.13
SKA1-202ENST00000398452 SYCE3A1L190 88 aa15.84■□□□□ 0.13
SKA1-202ENST00000398452 ARHGEF35A5YM69 484 aa15.84■□□□□ 0.13
SKA1-202ENST00000398452 SLC34A2O95436 690 aa15.84■□□□□ 0.13
SKA1-202ENST00000398452 EYA4O95677 639 aa15.84■□□□□ 0.13
SKA1-202ENST00000398452 HMGCRP04035 888 aa15.84■□□□□ 0.13
SKA1-202ENST00000398452 PLA2G4BP0C869 781 aa15.84■□□□□ 0.13
SKA1-202ENST00000398452 SPATA31C1P0DKV0 1188 aa15.84■□□□□ 0.13
SKA1-202ENST00000398452 CCDC192P0DO97 292 aa15.84■□□□□ 0.13
SKA1-202ENST00000398452 TCF7P36402 384 aaPredicted RBP15.84■□□□□ 0.13
SKA1-202ENST00000398452 MTFR1Q15390 333 aa15.84■□□□□ 0.13
SKA1-202ENST00000398452 UTP14CQ5TAP6 766 aaKnown RBP15.84■□□□□ 0.13
SKA1-202ENST00000398452 PDXDC2PQ6P474 469 aa15.84■□□□□ 0.13
SKA1-202ENST00000398452 ABHD15Q6UXT9 468 aa15.84■□□□□ 0.13
SKA1-202ENST00000398452 C4orf19Q8IY42 314 aa15.84■□□□□ 0.13
SKA1-202ENST00000398452 SLAIN1Q8ND83 568 aa15.84■□□□□ 0.13
SKA1-202ENST00000398452 KATNBL1Q9H079 304 aa15.84■□□□□ 0.13
SKA1-202ENST00000398452 RMND1Q9NWS8 449 aa15.84■□□□□ 0.13
SKA1-202ENST00000398452 MGAMO43451 1857 aa15.84■□□□□ 0.13
SKA1-202ENST00000398452 CENPFP49454 3210 aa15.83■□□□□ 0.13
SKA1-202ENST00000398452 E9PMD0 336 aa15.83■□□□□ 0.12
SKA1-202ENST00000398452 XRCC6P12956 609 aaKnown RBP eCLIP15.83■□□□□ 0.12
SKA1-202ENST00000398452 STAT5BP51692 787 aa15.83■□□□□ 0.12
SKA1-202ENST00000398452 MCM6Q14566 821 aa15.83■□□□□ 0.12
SKA1-202ENST00000398452 PXYLP1Q8TE99 480 aa15.83■□□□□ 0.12
SKA1-202ENST00000398452 TRIB2Q92519 343 aa15.83■□□□□ 0.12
SKA1-202ENST00000398452 COPS5Q92905 334 aa15.83■□□□□ 0.12
SKA1-202ENST00000398452 EMID1Q96A84 441 aaPredicted RBP15.83■□□□□ 0.12
SKA1-202ENST00000398452 FAM167AQ96KS9 214 aa15.83■□□□□ 0.12
SKA1-202ENST00000398452 NRBP2Q9NSY0 501 aa15.83■□□□□ 0.12
SKA1-202ENST00000398452 KIAA1468Q9P260 1216 aa15.83■□□□□ 0.12
SKA1-202ENST00000398452 DYNC1LI2O43237 492 aaPredicted RBP15.82■□□□□ 0.12
SKA1-202ENST00000398452 ATG7O95352 703 aa15.82■□□□□ 0.12
SKA1-202ENST00000398452 LYPLA2O95372 231 aa15.82■□□□□ 0.12
SKA1-202ENST00000398452 ZNF865P0CJ78 1059 aaPredicted RBP15.82■□□□□ 0.12
SKA1-202ENST00000398452 SMPD1P17405 629 aa15.82■□□□□ 0.12
SKA1-202ENST00000398452 YWHABP31946 246 aaKnown RBP15.82■□□□□ 0.12
SKA1-202ENST00000398452 CPT1AP50416 773 aa15.82■□□□□ 0.12
SKA1-202ENST00000398452 SLC26A2P50443 739 aa15.82■□□□□ 0.12
SKA1-202ENST00000398452 ASIC1P78348 528 aa15.82■□□□□ 0.12
SKA1-202ENST00000398452 PNOCQ13519 176 aa15.82■□□□□ 0.12
SKA1-202ENST00000398452 NAALADL2Q58DX5 795 aa15.82■□□□□ 0.12
SKA1-202ENST00000398452 XKR3Q5GH77 459 aa15.82■□□□□ 0.12
SKA1-202ENST00000398452 GPBP1Q86WP2 473 aa15.82■□□□□ 0.12
SKA1-202ENST00000398452 PPTC7Q8NI37 304 aa15.82■□□□□ 0.12
SKA1-202ENST00000398452 PIGOQ8TEQ8 1089 aa15.82■□□□□ 0.12
SKA1-202ENST00000398452 STAMQ92783 540 aa15.82■□□□□ 0.12
SKA1-202ENST00000398452 GPR20Q99678 358 aa15.82■□□□□ 0.12
SKA1-202ENST00000398452 GTPBP4Q9BZE4 634 aaKnown RBP15.82■□□□□ 0.12
SKA1-202ENST00000398452 BHMT2Q9H2M3 363 aa15.82■□□□□ 0.12
SKA1-202ENST00000398452 SMARCAD1Q9H4L7 1026 aa15.82■□□□□ 0.12
SKA1-202ENST00000398452 KBTBD4Q9NVX7 518 aa15.82■□□□□ 0.12
SKA1-202ENST00000398452 ZNF215Q9UL58 517 aaPredicted RBP15.82■□□□□ 0.12
SKA1-202ENST00000398452 Q9Y3F1 56 aa15.82■□□□□ 0.12
SKA1-202ENST00000398452 KIAA1217Q5T5P2 1943 aa15.82■□□□□ 0.12
SKA1-202ENST00000398452 C11orf97A0A1B0GVM6 126 aaPredicted RBP15.81■□□□□ 0.12
SKA1-202ENST00000398452 GSTTP1A0A1W2PQM5 241 aa15.81■□□□□ 0.12
SKA1-202ENST00000398452 LRRC37A2A6NM11 1700 aa15.81■□□□□ 0.12
SKA1-202ENST00000398452 ZEB2O60315 1214 aa15.81■□□□□ 0.12
SKA1-202ENST00000398452 RARBP10826 455 aa15.81■□□□□ 0.12
SKA1-202ENST00000398452 GRK4P32298 578 aa15.81■□□□□ 0.12
SKA1-202ENST00000398452 ARHGAP1Q07960 439 aa15.81■□□□□ 0.12
SKA1-202ENST00000398452 ECM1Q16610 540 aa15.81■□□□□ 0.12
SKA1-202ENST00000398452 DGKDQ16760 1214 aa15.81■□□□□ 0.12
SKA1-202ENST00000398452 HSDL1Q3SXM5 330 aa15.81■□□□□ 0.12
SKA1-202ENST00000398452 XKR9Q5GH70 373 aa15.81■□□□□ 0.12
SKA1-202ENST00000398452 LCE2DQ5TA82 110 aaPredicted RBP15.81■□□□□ 0.12
SKA1-202ENST00000398452 TRMT1LQ7Z2T5 733 aaKnown RBP15.81■□□□□ 0.12
SKA1-202ENST00000398452 TLK2Q86UE8 772 aa15.81■□□□□ 0.12
SKA1-202ENST00000398452 CCDC60Q8IWA6 550 aaPredicted RBP15.81■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms