RNA–Protein interactions for RNA: ENST00000394943.7

LIMA1-202, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,669 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-202ENST00000394943 CEP350Q5VT06 3117 aa7.88□□□□□ -1.15
LIMA1-202ENST00000394943 PITPNM1O00562 1244 aa7.88□□□□□ -1.15
LIMA1-202ENST00000394943 OATP04181 439 aa7.88□□□□□ -1.15
LIMA1-202ENST00000394943 RFC2P35250 354 aa7.88□□□□□ -1.15
LIMA1-202ENST00000394943 HAUS3Q68CZ6 603 aa7.88□□□□□ -1.15
LIMA1-202ENST00000394943 PDXDC2PQ6P474 469 aa7.88□□□□□ -1.15
LIMA1-202ENST00000394943 CATSPER3Q86XQ3 398 aa7.88□□□□□ -1.15
LIMA1-202ENST00000394943 SYT2Q8N9I0 419 aaPredicted RBP7.88□□□□□ -1.15
LIMA1-202ENST00000394943 TNPO1Q92973 898 aaKnown RBP7.88□□□□□ -1.15
LIMA1-202ENST00000394943 NTPCRQ9BSD7 190 aaKnown RBP7.88□□□□□ -1.15
LIMA1-202ENST00000394943 TRAIPQ9BWF2 469 aa7.88□□□□□ -1.15
LIMA1-202ENST00000394943 NT5C3AQ9H0P0 336 aa7.88□□□□□ -1.15
LIMA1-202ENST00000394943 ZSWIM4Q9H7M6 989 aa7.88□□□□□ -1.15
LIMA1-202ENST00000394943 ZBTB4Q9P1Z0 1013 aaPredicted RBP7.88□□□□□ -1.15
LIMA1-202ENST00000394943 SPTLC2O15270 562 aa7.88□□□□□ -1.15
LIMA1-202ENST00000394943 PPFIA3O75145 1194 aa7.88□□□□□ -1.15
LIMA1-202ENST00000394943 MED24O75448 989 aa7.88□□□□□ -1.15
LIMA1-202ENST00000394943 EYA4O95677 639 aa7.88□□□□□ -1.15
LIMA1-202ENST00000394943 MDM2Q00987 491 aaPredicted RBP7.88□□□□□ -1.15
LIMA1-202ENST00000394943 ZNF174Q15697 407 aa7.88□□□□□ -1.15
LIMA1-202ENST00000394943 CDCA2Q69YH5 1023 aaPredicted RBP7.88□□□□□ -1.15
LIMA1-202ENST00000394943 DTHD1Q6ZMT9 781 aa7.88□□□□□ -1.15
LIMA1-202ENST00000394943 ANO5Q75V66 913 aa7.88□□□□□ -1.15
LIMA1-202ENST00000394943 ATP6V0A1Q93050 837 aa7.88□□□□□ -1.15
LIMA1-202ENST00000394943 RAB34Q9BZG1 259 aa7.88□□□□□ -1.15
LIMA1-202ENST00000394943 SPC25Q9HBM1 224 aa7.88□□□□□ -1.15
LIMA1-202ENST00000394943 ZNF302Q9NR11 478 aa7.88□□□□□ -1.15
LIMA1-202ENST00000394943 KBTBD4Q9NVX7 518 aa7.88□□□□□ -1.15
LIMA1-202ENST00000394943 MICAL3Q7RTP6 2002 aa7.88□□□□□ -1.15
LIMA1-202ENST00000394943 ARL2P36404 184 aa7.88□□□□□ -1.15
LIMA1-202ENST00000394943 KRT85P78386 507 aa7.88□□□□□ -1.15
LIMA1-202ENST00000394943 CDC42EP1Q00587 391 aa7.88□□□□□ -1.15
LIMA1-202ENST00000394943 BRDTQ58F21 947 aaPredicted RBP7.88□□□□□ -1.15
LIMA1-202ENST00000394943 NT5DC1Q5TFE4 455 aa7.88□□□□□ -1.15
LIMA1-202ENST00000394943 DHX38Q92620 1227 aaKnown RBP7.88□□□□□ -1.15
LIMA1-202ENST00000394943 ZNF215Q9UL58 517 aaPredicted RBP7.88□□□□□ -1.15
LIMA1-202ENST00000394943 PCDHA7Q9UN72 937 aa7.88□□□□□ -1.15
LIMA1-202ENST00000394943 MCM7P33993 719 aa7.87□□□□□ -1.15
LIMA1-202ENST00000394943 NBR1Q14596 966 aa7.87□□□□□ -1.15
LIMA1-202ENST00000394943 FAM187BQ17R55 369 aa7.87□□□□□ -1.15
LIMA1-202ENST00000394943 TMEM266Q2M3C6 531 aa7.87□□□□□ -1.15
LIMA1-202ENST00000394943 RASIP1Q5U651 963 aa7.87□□□□□ -1.15
LIMA1-202ENST00000394943 WDR78Q5VTH9 848 aa7.87□□□□□ -1.15
LIMA1-202ENST00000394943 RBM43Q6ZSC3 357 aaKnown RBP7.87□□□□□ -1.15
LIMA1-202ENST00000394943 CRIPAKQ8N1N5 446 aa7.87□□□□□ -1.15
LIMA1-202ENST00000394943 RNF208Q9H0X6 261 aa7.87□□□□□ -1.15
LIMA1-202ENST00000394943 C17orf75Q9HAS0 396 aa7.87□□□□□ -1.15
LIMA1-202ENST00000394943 PHLPP2Q6ZVD8 1323 aa7.87□□□□□ -1.15
LIMA1-202ENST00000394943 KBTBD13C9JR72 458 aa7.87□□□□□ -1.15
LIMA1-202ENST00000394943 H3BRB1 525 aa7.87□□□□□ -1.15
LIMA1-202ENST00000394943 MAGEB2O15479 319 aa7.87□□□□□ -1.15
LIMA1-202ENST00000394943 DYNC1LI2O43237 492 aaPredicted RBP7.87□□□□□ -1.15
LIMA1-202ENST00000394943 ZNF76P36508 570 aa7.87□□□□□ -1.15
LIMA1-202ENST00000394943 STAT5BP51692 787 aa7.87□□□□□ -1.15
LIMA1-202ENST00000394943 SNW1Q13573 536 aaKnown RBP7.87□□□□□ -1.15
LIMA1-202ENST00000394943 C1orf186Q6ZWK4 172 aa7.87□□□□□ -1.15
LIMA1-202ENST00000394943 MIER3Q7Z3K6 550 aa7.87□□□□□ -1.15
LIMA1-202ENST00000394943 CAGE1Q8TC20 777 aa7.87□□□□□ -1.15
LIMA1-202ENST00000394943 DEFB118Q96PH6 123 aa7.87□□□□□ -1.15
LIMA1-202ENST00000394943 TUT1Q9H6E5 874 aaKnown RBP7.87□□□□□ -1.15
LIMA1-202ENST00000394943 MYH11P35749 1972 aa7.87□□□□□ -1.15
LIMA1-202ENST00000394943 VPS37CA5D8V6 355 aaPredicted RBP7.87□□□□□ -1.15
LIMA1-202ENST00000394943 INPPL1O15357 1258 aa7.87□□□□□ -1.15
LIMA1-202ENST00000394943 ACTN4O43707 911 aaKnown RBP7.87□□□□□ -1.15
LIMA1-202ENST00000394943 SMIM10L2AP0DMW4 78 aa7.87□□□□□ -1.15
LIMA1-202ENST00000394943 SMIM10L2BP0DMW5 78 aa7.87□□□□□ -1.15
LIMA1-202ENST00000394943 DNM1Q05193 864 aaKnown RBP7.87□□□□□ -1.15
LIMA1-202ENST00000394943 GRIN1Q05586 938 aa7.87□□□□□ -1.15
LIMA1-202ENST00000394943 MAPK7Q13164 816 aa7.87□□□□□ -1.15
LIMA1-202ENST00000394943 SMYD5Q6GMV2 418 aa7.87□□□□□ -1.15
LIMA1-202ENST00000394943 ERMNQ8TAM6 284 aa7.87□□□□□ -1.15
LIMA1-202ENST00000394943 NACC1Q96RE7 527 aa7.87□□□□□ -1.15
LIMA1-202ENST00000394943 FIZ1Q96SL8 496 aa7.87□□□□□ -1.15
LIMA1-202ENST00000394943 CSRNP2Q9H175 543 aa7.87□□□□□ -1.15
LIMA1-202ENST00000394943 ADAMTS10Q9H324 1103 aa7.87□□□□□ -1.15
LIMA1-202ENST00000394943 MLXIPQ9HAP2 919 aa7.87□□□□□ -1.15
LIMA1-202ENST00000394943 KIAA1671Q9BY89 1806 aa7.86□□□□□ -1.15
LIMA1-202ENST00000394943 A0A087X0B3 334 aa7.86□□□□□ -1.15
LIMA1-202ENST00000394943 DTNBO60941 627 aa7.86□□□□□ -1.15
LIMA1-202ENST00000394943 BMP8BP34820 402 aa7.86□□□□□ -1.15
LIMA1-202ENST00000394943 RARRES1P49788 294 aa7.86□□□□□ -1.15
LIMA1-202ENST00000394943 ITGA7Q13683 1181 aa7.86□□□□□ -1.15
LIMA1-202ENST00000394943 GPNMBQ14956 572 aa7.86□□□□□ -1.15
LIMA1-202ENST00000394943 MTHFD1LQ6UB35 978 aa7.86□□□□□ -1.15
LIMA1-202ENST00000394943 LENG1Q96BZ8 264 aaPredicted RBP7.86□□□□□ -1.15
LIMA1-202ENST00000394943 C7orf25Q9BPX7 421 aa7.86□□□□□ -1.15
LIMA1-202ENST00000394943 TNMDQ9H2S6 317 aa7.86□□□□□ -1.15
LIMA1-202ENST00000394943 RNPEPQ9H4A4 650 aa7.86□□□□□ -1.15
LIMA1-202ENST00000394943 ANK1P16157 1881 aa7.86□□□□□ -1.15
LIMA1-202ENST00000394943 GPR32O75388 356 aa7.86□□□□□ -1.15
LIMA1-202ENST00000394943 POU5F1Q01860 360 aaKnown RBP7.86□□□□□ -1.15
LIMA1-202ENST00000394943 FAAP100Q0VG06 881 aa7.86□□□□□ -1.15
LIMA1-202ENST00000394943 GJC2Q5T442 439 aaPredicted RBP7.86□□□□□ -1.15
LIMA1-202ENST00000394943 TAF2Q6P1X5 1199 aa7.86□□□□□ -1.15
LIMA1-202ENST00000394943 NECAB2Q7Z6G3 386 aa7.86□□□□□ -1.15
LIMA1-202ENST00000394943 FMR1NBQ8N0W7 255 aaPredicted RBP7.86□□□□□ -1.15
LIMA1-202ENST00000394943 RSPH1Q8WYR4 309 aa7.86□□□□□ -1.15
LIMA1-202ENST00000394943 RAD54LQ92698 747 aa7.86□□□□□ -1.15
LIMA1-202ENST00000394943 DYDC2Q96IM9 177 aa7.86□□□□□ -1.15
LIMA1-202ENST00000394943 JPH2Q9BR39 696 aaPredicted RBP7.86□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms