RNA–Protein interactions for RNA: ENST00000394299.6

GPC3-202, Transcript of glypican 3, humanhuman

TSL 1 (best) BASIC

Gene GPC3, Length 2,379 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPC3-202ENST00000394299 LSM14BQ9BX40 385 aaKnown RBP16.62■□□□□ 0.25
GPC3-202ENST00000394299 AGO4Q9HCK5 861 aaKnown RBP16.62■□□□□ 0.25
GPC3-202ENST00000394299 TRAF3IP3Q9Y228 551 aa16.62■□□□□ 0.25
GPC3-202ENST00000394299 UBIAD1Q9Y5Z9 338 aa16.62■□□□□ 0.25
GPC3-202ENST00000394299 TGFB1I1O43294 461 aa16.61■□□□□ 0.25
GPC3-202ENST00000394299 KIF20AO95235 890 aa16.61■□□□□ 0.25
GPC3-202ENST00000394299 ACTN1P12814 892 aa16.61■□□□□ 0.25
GPC3-202ENST00000394299 EIF4A3P38919 411 aaKnown RBP16.61■□□□□ 0.25
GPC3-202ENST00000394299 EDRF1Q3B7T1 1238 aa16.61■□□□□ 0.25
GPC3-202ENST00000394299 CCDC122Q5T0U0 273 aa16.61■□□□□ 0.25
GPC3-202ENST00000394299 RNF207Q6ZRF8 634 aa16.61■□□□□ 0.25
GPC3-202ENST00000394299 ZC3H3Q8IXZ2 948 aaKnown RBP16.61■□□□□ 0.25
GPC3-202ENST00000394299 FIZ1Q96SL8 496 aa16.61■□□□□ 0.25
GPC3-202ENST00000394299 PUF60Q9UHX1 559 aaKnown RBP16.61■□□□□ 0.25
GPC3-202ENST00000394299 USP14P54578 494 aa16.6■□□□□ 0.25
GPC3-202ENST00000394299 POLR2FP61218 127 aaKnown RBP16.6■□□□□ 0.25
GPC3-202ENST00000394299 MTMR1Q13613 665 aa16.6■□□□□ 0.25
GPC3-202ENST00000394299 PCNX4Q63HM2 1172 aa16.6■□□□□ 0.25
GPC3-202ENST00000394299 CACNA2D4Q7Z3S7 1137 aa16.6■□□□□ 0.25
GPC3-202ENST00000394299 KIAA1328Q86T90 577 aa16.6■□□□□ 0.25
GPC3-202ENST00000394299 KLRG1Q96E93 195 aa16.6■□□□□ 0.25
GPC3-202ENST00000394299 CCDC42Q96M95 316 aa16.6■□□□□ 0.25
GPC3-202ENST00000394299 RIT2Q99578 217 aa16.6■□□□□ 0.25
GPC3-202ENST00000394299 JADE2Q9NQC1 790 aa16.6■□□□□ 0.25
GPC3-202ENST00000394299 TELO2Q9Y4R8 837 aa16.6■□□□□ 0.25
GPC3-202ENST00000394299 PCDHB13Q9Y5F0 798 aa16.6■□□□□ 0.25
GPC3-202ENST00000394299 NR3C1P04150 777 aa16.6■□□□□ 0.25
GPC3-202ENST00000394299 HOXA7P31268 230 aaPredicted RBP16.6■□□□□ 0.25
GPC3-202ENST00000394299 MARSP56192 900 aaKnown RBP16.6■□□□□ 0.25
GPC3-202ENST00000394299 ENOX2Q16206 610 aaKnown RBP16.6■□□□□ 0.25
GPC3-202ENST00000394299 UBXN4Q92575 508 aa16.6■□□□□ 0.25
GPC3-202ENST00000394299 RNF146Q9NTX7 359 aa16.6■□□□□ 0.25
GPC3-202ENST00000394299 HDAC6Q9UBN7 1215 aa16.6■□□□□ 0.25
GPC3-202ENST00000394299 TESPA1A2RU30 521 aaPredicted RBP16.59■□□□□ 0.25
GPC3-202ENST00000394299 PDXKO00764 312 aa16.59■□□□□ 0.25
GPC3-202ENST00000394299 DDNO94850 711 aaPredicted RBP16.59■□□□□ 0.25
GPC3-202ENST00000394299 SLC9A1P19634 815 aa16.59■□□□□ 0.25
GPC3-202ENST00000394299 CYLC1P35663 651 aaPredicted RBP16.59■□□□□ 0.25
GPC3-202ENST00000394299 UGCGQ16739 394 aa16.59■□□□□ 0.25
GPC3-202ENST00000394299 SNRNP48Q6IEG0 339 aaKnown RBP16.59■□□□□ 0.25
GPC3-202ENST00000394299 PDXDC1Q6P996 788 aa16.59■□□□□ 0.25
GPC3-202ENST00000394299 MTERF4Q7Z6M4 381 aaKnown RBP16.59■□□□□ 0.25
GPC3-202ENST00000394299 DAW1Q8N136 415 aa16.59■□□□□ 0.25
GPC3-202ENST00000394299 PDCD2LQ9BRP1 358 aa16.59■□□□□ 0.25
GPC3-202ENST00000394299 PARVGQ9HBI0 331 aa16.59■□□□□ 0.25
GPC3-202ENST00000394299 PXMP2Q9NR77 195 aa16.59■□□□□ 0.25
GPC3-202ENST00000394299 CTAGE9A4FU28 777 aa16.59■□□□□ 0.25
GPC3-202ENST00000394299 EIF3CLB5ME19 914 aaKnown RBP16.59■□□□□ 0.25
GPC3-202ENST00000394299 SORBS3O60504 671 aa16.59■□□□□ 0.25
GPC3-202ENST00000394299 TLR2O60603 784 aa16.59■□□□□ 0.25
GPC3-202ENST00000394299 GNA14O95837 355 aa16.59■□□□□ 0.25
GPC3-202ENST00000394299 BCRP11274 1271 aa16.59■□□□□ 0.25
GPC3-202ENST00000394299 HNRNPH3P31942 346 aaKnown RBP16.59■□□□□ 0.25
GPC3-202ENST00000394299 ARID5AQ03989 594 aa16.59■□□□□ 0.25
GPC3-202ENST00000394299 DCAF17Q5H9S7 520 aaPredicted RBP16.59■□□□□ 0.25
GPC3-202ENST00000394299 TEX2Q8IWB9 1127 aa16.59■□□□□ 0.25
GPC3-202ENST00000394299 CNKSR2Q8WXI2 1034 aa16.59■□□□□ 0.25
GPC3-202ENST00000394299 JAKMIP2Q96AA8 810 aa16.59■□□□□ 0.25
GPC3-202ENST00000394299 EIF3CQ99613 913 aaKnown RBP16.59■□□□□ 0.25
GPC3-202ENST00000394299 OLFML3Q9NRN5 406 aa16.59■□□□□ 0.25
GPC3-202ENST00000394299 TYW1Q9NV66 732 aaKnown RBP16.59■□□□□ 0.25
GPC3-202ENST00000394299 ZMYM2Q9UBW7 1377 aa16.59■□□□□ 0.25
GPC3-202ENST00000394299 MACROD2A1Z1Q3 448 aa16.58■□□□□ 0.25
GPC3-202ENST00000394299 ARHGEF35A5YM69 484 aa16.58■□□□□ 0.25
GPC3-202ENST00000394299 HIP1RO75146 1068 aa16.58■□□□□ 0.25
GPC3-202ENST00000394299 TMEM132BQ14DG7 1078 aa16.58■□□□□ 0.25
GPC3-202ENST00000394299 ODR4Q5SWX8 454 aa16.58■□□□□ 0.25
GPC3-202ENST00000394299 TEX35Q5T0J7 233 aa16.58■□□□□ 0.25
GPC3-202ENST00000394299 UTP14CQ5TAP6 766 aaKnown RBP16.58■□□□□ 0.25
GPC3-202ENST00000394299 ARHGEF16Q5VV41 709 aa16.58■□□□□ 0.25
GPC3-202ENST00000394299 PADI6Q6TGC4 694 aa16.58■□□□□ 0.25
GPC3-202ENST00000394299 PPP4R3CPQ6ZMV5 832 aa16.58■□□□□ 0.25
GPC3-202ENST00000394299 ZNF720Q7Z2F6 126 aa16.58■□□□□ 0.25
GPC3-202ENST00000394299 CCDC170Q8IYT3 715 aa16.58■□□□□ 0.25
GPC3-202ENST00000394299 REPS2Q8NFH8 660 aa16.58■□□□□ 0.25
GPC3-202ENST00000394299 CGNQ9P2M7 1197 aaKnown RBP16.58■□□□□ 0.25
GPC3-202ENST00000394299 ARMCX3Q9UH62 379 aaPredicted RBP16.58■□□□□ 0.25
GPC3-202ENST00000394299 CALUO43852 315 aaPredicted RBP16.58■□□□□ 0.24
GPC3-202ENST00000394299 CCNE2O96020 404 aa16.58■□□□□ 0.24
GPC3-202ENST00000394299 KIF11P52732 1056 aa16.58■□□□□ 0.24
GPC3-202ENST00000394299 KRT83P78385 493 aa16.58■□□□□ 0.24
GPC3-202ENST00000394299 GHRHRQ02643 423 aa16.58■□□□□ 0.24
GPC3-202ENST00000394299 MAPK7Q13164 816 aa16.58■□□□□ 0.24
GPC3-202ENST00000394299 BMT2Q1RMZ1 405 aa16.58■□□□□ 0.24
GPC3-202ENST00000394299 TCERG1LQ5VWI1 586 aa16.58■□□□□ 0.24
GPC3-202ENST00000394299 APOBEC3FQ8IUX4 373 aaKnown RBP16.58■□□□□ 0.24
GPC3-202ENST00000394299 FAM178BQ8IXR5 827 aa16.58■□□□□ 0.24
GPC3-202ENST00000394299 HAUS4Q9H6D7 363 aa16.58■□□□□ 0.24
GPC3-202ENST00000394299 GINM1Q9NU53 330 aa16.58■□□□□ 0.24
GPC3-202ENST00000394299 FRMPD4Q14CM0 1322 aa16.58■□□□□ 0.24
GPC3-202ENST00000394299 P4HBP07237 508 aaKnown RBP16.57■□□□□ 0.24
GPC3-202ENST00000394299 GAP43P17677 238 aa16.57■□□□□ 0.24
GPC3-202ENST00000394299 GFPT1Q06210 699 aaPredicted RBP16.57■□□□□ 0.24
GPC3-202ENST00000394299 HGSNATQ68CP4 663 aa16.57■□□□□ 0.24
GPC3-202ENST00000394299 ANKRD13CQ8N6S4 541 aa16.57■□□□□ 0.24
GPC3-202ENST00000394299 NAPGQ99747 312 aaPredicted RBP16.57■□□□□ 0.24
GPC3-202ENST00000394299 AS3MTQ9HBK9 375 aa16.57■□□□□ 0.24
GPC3-202ENST00000394299 CDC23Q9UJX2 597 aa16.57■□□□□ 0.24
GPC3-202ENST00000394299 ZNF214Q9UL59 606 aaPredicted RBP16.57■□□□□ 0.24
GPC3-202ENST00000394299 RBBP6Q7Z6E9 1792 aaKnown RBP16.57■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 16.9 ms