RNA–Protein interactions for RNA: ENST00000378825.4

CCDC3-201, Transcript of coiled-coil domain containing 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CCDC3, Length 2,731 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3-201ENST00000378825 WDR66Q8TBY9 1149 aa20.16■□□□□ 0.82
CCDC3-201ENST00000378825 NUCKS1Q9H1E3 243 aaKnown RBP20.16■□□□□ 0.82
CCDC3-201ENST00000378825 TPX2Q9ULW0 747 aaKnown RBP20.16■□□□□ 0.82
CCDC3-201ENST00000378825 ATP8A1Q9Y2Q0 1164 aa20.16■□□□□ 0.82
CCDC3-201ENST00000378825 TNRC6CQ9HCJ0 1690 aaKnown RBP20.16■□□□□ 0.82
CCDC3-201ENST00000378825 PSMD2Q13200 908 aa20.16■□□□□ 0.82
CCDC3-201ENST00000378825 GPBP1Q86WP2 473 aa20.16■□□□□ 0.82
CCDC3-201ENST00000378825 OSGEPQ9NPF4 335 aa20.16■□□□□ 0.82
CCDC3-201ENST00000378825 EMILIN3Q9NT22 766 aa20.16■□□□□ 0.82
CCDC3-201ENST00000378825 DDX25Q9UHL0 483 aaKnown RBP20.16■□□□□ 0.82
CCDC3-201ENST00000378825 USP21Q9UK80 565 aa20.16■□□□□ 0.82
CCDC3-201ENST00000378825 PNMA2Q9UL42 364 aa20.16■□□□□ 0.82
CCDC3-201ENST00000378825 EPB41L3Q9Y2J2 1087 aaPredicted RBP20.16■□□□□ 0.82
CCDC3-201ENST00000378825 SMIM23A6NLE4 172 aa20.15■□□□□ 0.82
CCDC3-201ENST00000378825 F8W031 263 aaPredicted RBP20.15■□□□□ 0.82
CCDC3-201ENST00000378825 MARCH6O60337 910 aa20.15■□□□□ 0.82
CCDC3-201ENST00000378825 NR2F2P24468 414 aa20.15■□□□□ 0.82
CCDC3-201ENST00000378825 SCTRP47872 440 aa20.15■□□□□ 0.82
CCDC3-201ENST00000378825 CUL1Q13616 776 aa20.15■□□□□ 0.82
CCDC3-201ENST00000378825 PEX26Q7Z412 305 aa20.15■□□□□ 0.82
CCDC3-201ENST00000378825 KIRREL3Q8IZU9 778 aa20.15■□□□□ 0.82
CCDC3-201ENST00000378825 ARFGAP2Q8N6H7 521 aa20.15■□□□□ 0.82
CCDC3-201ENST00000378825 ACTRT1Q8TDG2 376 aa20.15■□□□□ 0.82
CCDC3-201ENST00000378825 BUD13Q9BRD0 619 aaKnown RBP eCLIP20.15■□□□□ 0.82
CCDC3-201ENST00000378825 MTFR1LQ9H019 292 aa20.15■□□□□ 0.82
CCDC3-201ENST00000378825 HDAC9Q9UKV0 1011 aa20.15■□□□□ 0.82
CCDC3-201ENST00000378825 SRCAPQ6ZRS2 3230 aa20.15■□□□□ 0.82
CCDC3-201ENST00000378825 LTBP4Q8N2S1 1624 aa20.15■□□□□ 0.82
CCDC3-201ENST00000378825 TOM1O60784 492 aa20.15■□□□□ 0.82
CCDC3-201ENST00000378825 CAND2O75155 1236 aa20.15■□□□□ 0.82
CCDC3-201ENST00000378825 SLURP2P0DP57 97 aa20.15■□□□□ 0.82
CCDC3-201ENST00000378825 PDIA5Q14554 519 aa20.15■□□□□ 0.82
CCDC3-201ENST00000378825 DCAF17Q5H9S7 520 aaPredicted RBP20.15■□□□□ 0.82
CCDC3-201ENST00000378825 TTBK2Q6IQ55 1244 aa20.15■□□□□ 0.82
CCDC3-201ENST00000378825 LRRC45Q96CN5 670 aa20.15■□□□□ 0.82
CCDC3-201ENST00000378825 UFL1O94874 794 aa20.14■□□□□ 0.82
CCDC3-201ENST00000378825 RDXP35241 583 aaKnown RBP20.14■□□□□ 0.82
CCDC3-201ENST00000378825 SLC16A2P36021 539 aa20.14■□□□□ 0.82
CCDC3-201ENST00000378825 PARP9Q8IXQ6 854 aa20.14■□□□□ 0.82
CCDC3-201ENST00000378825 NEDD1Q8NHV4 660 aa20.14■□□□□ 0.82
CCDC3-201ENST00000378825 BHMG1C9JSJ3 638 aaPredicted RBP20.14■□□□□ 0.81
CCDC3-201ENST00000378825 F8VZ95 297 aa20.14■□□□□ 0.81
CCDC3-201ENST00000378825 BAG3O95817 575 aa20.14■□□□□ 0.81
CCDC3-201ENST00000378825 PLA2G4BP0C869 781 aa20.14■□□□□ 0.81
CCDC3-201ENST00000378825 SCP2P22307 547 aa20.14■□□□□ 0.81
CCDC3-201ENST00000378825 BTDP43251 543 aa20.14■□□□□ 0.81
CCDC3-201ENST00000378825 ARSHQ5FYA8 562 aa20.14■□□□□ 0.81
CCDC3-201ENST00000378825 DAAM2Q86T65 1068 aa20.14■□□□□ 0.81
CCDC3-201ENST00000378825 TATDN2Q93075 761 aa20.14■□□□□ 0.81
CCDC3-201ENST00000378825 RIOX1Q9H6W3 641 aa20.14■□□□□ 0.81
CCDC3-201ENST00000378825 A1CFQ9NQ94 594 aaKnown RBP20.14■□□□□ 0.81
CCDC3-201ENST00000378825 LRRC4BQ9NT99 713 aa20.14■□□□□ 0.81
CCDC3-201ENST00000378825 MCM8Q9UJA3 840 aa20.14■□□□□ 0.81
CCDC3-201ENST00000378825 MEIS1O00470 390 aa20.13■□□□□ 0.81
CCDC3-201ENST00000378825 PON1P27169 355 aa20.13■□□□□ 0.81
CCDC3-201ENST00000378825 CASP4P49662 377 aa20.13■□□□□ 0.81
CCDC3-201ENST00000378825 PREPLQ4J6C6 727 aaPredicted RBP20.13■□□□□ 0.81
CCDC3-201ENST00000378825 CACNA2D3Q8IZS8 1091 aa20.13■□□□□ 0.81
CCDC3-201ENST00000378825 UHMK1Q8TAS1 419 aaKnown RBP20.13■□□□□ 0.81
CCDC3-201ENST00000378825 CEP63Q96MT8 703 aa20.13■□□□□ 0.81
CCDC3-201ENST00000378825 RAB34Q9BZG1 259 aa20.13■□□□□ 0.81
CCDC3-201ENST00000378825 PCDHA12Q9UN75 941 aa20.13■□□□□ 0.81
CCDC3-201ENST00000378825 POTEFA5A3E0 1075 aa20.13■□□□□ 0.81
CCDC3-201ENST00000378825 POTEIP0CG38 1075 aa20.13■□□□□ 0.81
CCDC3-201ENST00000378825 CYP11B2P19099 503 aa20.13■□□□□ 0.81
CCDC3-201ENST00000378825 HOXD13P35453 343 aa20.13■□□□□ 0.81
CCDC3-201ENST00000378825 CDR1P51861 262 aa20.13■□□□□ 0.81
CCDC3-201ENST00000378825 PSMC6P62333 389 aa20.13■□□□□ 0.81
CCDC3-201ENST00000378825 TCERG1LQ5VWI1 586 aa20.13■□□□□ 0.81
CCDC3-201ENST00000378825 POTEGQ6S5H5 508 aa20.13■□□□□ 0.81
CCDC3-201ENST00000378825 POTEEQ6S8J3 1075 aa20.13■□□□□ 0.81
CCDC3-201ENST00000378825 ZNF804AQ7Z570 1209 aa20.13■□□□□ 0.81
CCDC3-201ENST00000378825 CPLX4Q7Z7G2 160 aa20.13■□□□□ 0.81
CCDC3-201ENST00000378825 GLG1Q92896 1179 aa20.13■□□□□ 0.81
CCDC3-201ENST00000378825 PBKQ96KB5 322 aa20.13■□□□□ 0.81
CCDC3-201ENST00000378825 RTFDC1Q9BY42 306 aaPredicted RBP20.13■□□□□ 0.81
CCDC3-201ENST00000378825 UBAP1LF5GYI3 381 aa20.12■□□□□ 0.81
CCDC3-201ENST00000378825 DRD4P21917 467 aa20.12■□□□□ 0.81
CCDC3-201ENST00000378825 PRPF4BQ13523 1007 aaKnown RBP20.12■□□□□ 0.81
CCDC3-201ENST00000378825 DDX60LQ5H9U9 1706 aaKnown RBP20.12■□□□□ 0.81
CCDC3-201ENST00000378825 PRR5LQ6MZQ0 368 aa20.12■□□□□ 0.81
CCDC3-201ENST00000378825 AADACL2Q6P093 401 aa20.12■□□□□ 0.81
CCDC3-201ENST00000378825 EP400NLQ6ZTU2 488 aa20.12■□□□□ 0.81
CCDC3-201ENST00000378825 C16orf86Q6ZW13 317 aa20.12■□□□□ 0.81
CCDC3-201ENST00000378825 ATP8B4Q8TF62 1192 aa20.12■□□□□ 0.81
CCDC3-201ENST00000378825 U2AF1L4Q8WU68 220 aaKnown RBP20.12■□□□□ 0.81
CCDC3-201ENST00000378825 N4BP2L2Q92802 583 aaPredicted RBP20.12■□□□□ 0.81
CCDC3-201ENST00000378825 RPGRQ92834 1020 aaKnown RBP20.12■□□□□ 0.81
CCDC3-201ENST00000378825 FAM212AQ96EL1 285 aa20.12■□□□□ 0.81
CCDC3-201ENST00000378825 ERVK-5Q9HDB9 667 aa20.12■□□□□ 0.81
CCDC3-201ENST00000378825 BTAF1O14981 1849 aa20.12■□□□□ 0.81
CCDC3-201ENST00000378825 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP20.12■□□□□ 0.81
CCDC3-201ENST00000378825 FRMD3A2A2Y4 597 aa20.12■□□□□ 0.81
CCDC3-201ENST00000378825 DDX3XO00571 662 aaKnown RBP eCLIP20.12■□□□□ 0.81
CCDC3-201ENST00000378825 FGGP02679 453 aa20.12■□□□□ 0.81
CCDC3-201ENST00000378825 KCNA1Q09470 495 aa20.12■□□□□ 0.81
CCDC3-201ENST00000378825 ZNF211Q13398 564 aaPredicted RBP20.12■□□□□ 0.81
CCDC3-201ENST00000378825 DCAF12L1Q5VU92 463 aa20.12■□□□□ 0.81
CCDC3-201ENST00000378825 GGA2Q9UJY4 613 aa20.12■□□□□ 0.81
CCDC3-201ENST00000378825 IGSF9BQ9UPX0 1349 aa20.12■□□□□ 0.81
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms