RNA–Protein interactions for RNA: ENST00000377797.7

TCOF1-202, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene TCOF1, Length 5,095 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-202ENST00000377797 VPS18Q9P253 973 aa15.8■□□□□ 0.12
TCOF1-202ENST00000377797 KCPQ6ZWJ8 1503 aa15.8■□□□□ 0.12
TCOF1-202ENST00000377797 ROBO1Q9Y6N7 1651 aa15.8■□□□□ 0.12
TCOF1-202ENST00000377797 IQCA1LA6NCM1 817 aa15.8■□□□□ 0.12
TCOF1-202ENST00000377797 SERPING1P05155 500 aa15.8■□□□□ 0.12
TCOF1-202ENST00000377797 XXYLT1Q8NBI6 393 aa15.8■□□□□ 0.12
TCOF1-202ENST00000377797 NLRP4Q96MN2 994 aa15.8■□□□□ 0.12
TCOF1-202ENST00000377797 OGFRQ9NZT2 677 aa15.8■□□□□ 0.12
TCOF1-202ENST00000377797 PHLPP2Q6ZVD8 1323 aa15.8■□□□□ 0.12
TCOF1-202ENST00000377797 NR3C2P08235 984 aa15.79■□□□□ 0.12
TCOF1-202ENST00000377797 MAP3K9P80192 1104 aa15.79■□□□□ 0.12
TCOF1-202ENST00000377797 GIMAP8Q8ND71 665 aaPredicted RBP15.79■□□□□ 0.12
TCOF1-202ENST00000377797 MMS19Q96T76 1030 aa15.79■□□□□ 0.12
TCOF1-202ENST00000377797 ATP6V0A4Q9HBG4 840 aa15.79■□□□□ 0.12
TCOF1-202ENST00000377797 INTS8Q75QN2 995 aaKnown RBP15.79■□□□□ 0.12
TCOF1-202ENST00000377797 ELOA2Q8IYF1 753 aaPredicted RBP15.79■□□□□ 0.12
TCOF1-202ENST00000377797 EXOC8Q8IYI6 725 aa15.79■□□□□ 0.12
TCOF1-202ENST00000377797 GDAP1L1Q96MZ0 367 aa15.79■□□□□ 0.12
TCOF1-202ENST00000377797 IKBKGQ9Y6K9 419 aa15.79■□□□□ 0.12
TCOF1-202ENST00000377797 INPP5BP32019 993 aa15.79■□□□□ 0.12
TCOF1-202ENST00000377797 ABCD1P33897 745 aa15.79■□□□□ 0.12
TCOF1-202ENST00000377797 NEDD9Q14511 834 aa15.79■□□□□ 0.12
TCOF1-202ENST00000377797 DNAJC21Q5F1R6 531 aaKnown RBP15.79■□□□□ 0.12
TCOF1-202ENST00000377797 CCDC125Q86Z20 511 aa15.79■□□□□ 0.12
TCOF1-202ENST00000377797 MAK16Q9BXY0 300 aaKnown RBP15.79■□□□□ 0.12
TCOF1-202ENST00000377797 UTP11Q9Y3A2 253 aaKnown RBP15.79■□□□□ 0.12
TCOF1-202ENST00000377797 ATRNO75882 1429 aa15.79■□□□□ 0.12
TCOF1-202ENST00000377797 SMIM23A6NLE4 172 aa15.79■□□□□ 0.12
TCOF1-202ENST00000377797 NMT1P30419 496 aaKnown RBP15.79■□□□□ 0.12
TCOF1-202ENST00000377797 ZNF365Q70YC5 407 aa15.79■□□□□ 0.12
TCOF1-202ENST00000377797 FAM83AQ86UY5 434 aa15.79■□□□□ 0.12
TCOF1-202ENST00000377797 UBLCP1Q8WVY7 318 aaPredicted RBP15.79■□□□□ 0.12
TCOF1-202ENST00000377797 A0A1B0GTH6 734 aa15.78■□□□□ 0.12
TCOF1-202ENST00000377797 ZNF233A6NK53 670 aa15.78■□□□□ 0.12
TCOF1-202ENST00000377797 RPA1P27694 616 aa15.78■□□□□ 0.12
TCOF1-202ENST00000377797 TFAMQ00059 246 aaKnown RBP15.78■□□□□ 0.12
TCOF1-202ENST00000377797 LONRF2Q1L5Z9 754 aa15.78■□□□□ 0.12
TCOF1-202ENST00000377797 ZBTB33Q86T24 672 aa15.78■□□□□ 0.12
TCOF1-202ENST00000377797 LIMA1Q9UHB6 759 aaKnown RBP15.78■□□□□ 0.12
TCOF1-202ENST00000377797 RGPD2P0DJD1 1756 aa15.78■□□□□ 0.12
TCOF1-202ENST00000377797 DENND3A2RUS2 1198 aa15.78■□□□□ 0.12
TCOF1-202ENST00000377797 WNT10BO00744 389 aa15.78■□□□□ 0.12
TCOF1-202ENST00000377797 BPIFB4P59827 614 aa15.78■□□□□ 0.12
TCOF1-202ENST00000377797 OSTNP61366 133 aa15.78■□□□□ 0.12
TCOF1-202ENST00000377797 PPP1R16BQ96T49 567 aa15.78■□□□□ 0.12
TCOF1-202ENST00000377797 VEGFAP15692 232 aaPredicted RBP15.78■□□□□ 0.12
TCOF1-202ENST00000377797 NSFP46459 744 aaKnown RBP15.78■□□□□ 0.12
TCOF1-202ENST00000377797 YARSP54577 528 aaKnown RBP15.78■□□□□ 0.12
TCOF1-202ENST00000377797 SPDYE2Q495Y8 402 aa15.78■□□□□ 0.12
TCOF1-202ENST00000377797 SRGAP1Q7Z6B7 1085 aa15.78■□□□□ 0.12
TCOF1-202ENST00000377797 RNF169Q8NCN4 708 aa15.78■□□□□ 0.12
TCOF1-202ENST00000377797 REEP2Q9BRK0 252 aa15.78■□□□□ 0.12
TCOF1-202ENST00000377797 RGPD1P0DJD0 1748 aa15.78■□□□□ 0.12
TCOF1-202ENST00000377797 USP27XA6NNY8 438 aa15.78■□□□□ 0.12
TCOF1-202ENST00000377797 FOXP2O15409 715 aa15.78■□□□□ 0.12
TCOF1-202ENST00000377797 HIP1RO75146 1068 aa15.78■□□□□ 0.12
TCOF1-202ENST00000377797 RPS6P62753 249 aaKnown RBP15.78■□□□□ 0.12
TCOF1-202ENST00000377797 LACTBP83111 547 aaPredicted RBP15.78■□□□□ 0.12
TCOF1-202ENST00000377797 NBPF12Q5TAG4 269 aaPredicted RBP15.78■□□□□ 0.12
TCOF1-202ENST00000377797 SCYL3Q8IZE3 742 aa15.78■□□□□ 0.12
TCOF1-202ENST00000377797 AP5M1Q9H0R1 490 aa15.78■□□□□ 0.12
TCOF1-202ENST00000377797 PCDHA13Q9Y5I0 950 aa15.78■□□□□ 0.12
TCOF1-202ENST00000377797 LRRC53A6NM62 1247 aa15.77■□□□□ 0.12
TCOF1-202ENST00000377797 MAPK8IP2Q13387 824 aaPredicted RBP15.77■□□□□ 0.12
TCOF1-202ENST00000377797 SND1Q7KZF4 910 aaKnown RBP eCLIP15.77■□□□□ 0.12
TCOF1-202ENST00000377797 CCDC105Q8IYK2 499 aa15.77■□□□□ 0.12
TCOF1-202ENST00000377797 ZNF302Q9NR11 478 aa15.77■□□□□ 0.12
TCOF1-202ENST00000377797 PCDHAC2Q9Y5I4 1007 aa15.77■□□□□ 0.12
TCOF1-202ENST00000377797 SLIT2O94813 1529 aa15.77■□□□□ 0.12
TCOF1-202ENST00000377797 GCLMP48507 274 aa15.77■□□□□ 0.12
TCOF1-202ENST00000377797 MAP2K1Q02750 393 aaPredicted RBP15.77■□□□□ 0.12
TCOF1-202ENST00000377797 ALKBH5Q6P6C2 394 aaKnown RBP15.77■□□□□ 0.12
TCOF1-202ENST00000377797 PCDHB4Q9Y5E5 795 aa15.77■□□□□ 0.12
TCOF1-202ENST00000377797 SLURP2P0DP57 97 aa15.77■□□□□ 0.12
TCOF1-202ENST00000377797 FKBP1AP62942 108 aaKnown RBP15.77■□□□□ 0.12
TCOF1-202ENST00000377797 FASTKD5Q7L8L6 764 aaKnown RBP15.77■□□□□ 0.12
TCOF1-202ENST00000377797 HACE1Q8IYU2 909 aa15.77■□□□□ 0.12
TCOF1-202ENST00000377797 GMCL1P1Q8NEA9 526 aa15.77■□□□□ 0.12
TCOF1-202ENST00000377797 PSMD1Q99460 953 aa15.77■□□□□ 0.12
TCOF1-202ENST00000377797 MXRA8Q9BRK3 442 aa15.77■□□□□ 0.12
TCOF1-202ENST00000377797 KCNF1Q9H3M0 494 aa15.77■□□□□ 0.12
TCOF1-202ENST00000377797 SLC9A2Q9UBY0 812 aa15.77■□□□□ 0.12
TCOF1-202ENST00000377797 ASIC3Q9UHC3 531 aa15.77■□□□□ 0.12
TCOF1-202ENST00000377797 A0A1W2PQC6 194 aa15.77■□□□□ 0.11
TCOF1-202ENST00000377797 KRIT1O00522 736 aa15.77■□□□□ 0.11
TCOF1-202ENST00000377797 MSTO1Q9BUK6 570 aa15.77■□□□□ 0.11
TCOF1-202ENST00000377797 JPH1Q9HDC5 661 aaPredicted RBP15.77■□□□□ 0.11
TCOF1-202ENST00000377797 CEP72Q9P209 647 aa15.77■□□□□ 0.11
TCOF1-202ENST00000377797 FAM198AQ9UFP1 575 aa15.77■□□□□ 0.11
TCOF1-202ENST00000377797 SNX16P57768 344 aa15.76■□□□□ 0.11
TCOF1-202ENST00000377797 PAK2Q13177 524 aa15.76■□□□□ 0.11
TCOF1-202ENST00000377797 HAUS6Q7Z4H7 955 aa15.76■□□□□ 0.11
TCOF1-202ENST00000377797 APOL6Q9BWW8 343 aa15.76■□□□□ 0.11
TCOF1-202ENST00000377797 MOCS3O95396 460 aa15.76■□□□□ 0.11
TCOF1-202ENST00000377797 YWHABP31946 246 aaKnown RBP15.76■□□□□ 0.11
TCOF1-202ENST00000377797 MESDQ14696 234 aa15.76■□□□□ 0.11
TCOF1-202ENST00000377797 ADAT2Q7Z6V5 191 aaKnown RBP15.76■□□□□ 0.11
TCOF1-202ENST00000377797 IPO4Q8TEX9 1081 aaKnown RBP15.76■□□□□ 0.11
TCOF1-202ENST00000377797 HINFPQ9BQA5 517 aa15.76■□□□□ 0.11
TCOF1-202ENST00000377797 MSH4O15457 936 aa15.76■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms