RNA–Protein interactions for RNA: ENST00000375299.7

UPF3A-202, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF3A, Length 2,387 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-202ENST00000375299 EDRF1Q3B7T1 1238 aa23.08■■□□□ 1.29
UPF3A-202ENST00000375299 RC3H1Q5TC82 1133 aaKnown RBP23.08■■□□□ 1.29
UPF3A-202ENST00000375299 ALKBH5Q6P6C2 394 aaKnown RBP23.08■■□□□ 1.29
UPF3A-202ENST00000375299 CYB5D1Q6P9G0 228 aa23.08■■□□□ 1.29
UPF3A-202ENST00000375299 FUKQ8N0W3 1084 aa23.08■■□□□ 1.29
UPF3A-202ENST00000375299 CCDC26Q8TAB7 109 aa23.08■■□□□ 1.29
UPF3A-202ENST00000375299 DDX25Q9UHL0 483 aaKnown RBP23.08■■□□□ 1.29
UPF3A-202ENST00000375299 HDAC9Q9UKV0 1011 aa23.08■■□□□ 1.29
UPF3A-202ENST00000375299 E9PMD0 336 aa23.07■■□□□ 1.28
UPF3A-202ENST00000375299 ITGA4P13612 1032 aa23.07■■□□□ 1.28
UPF3A-202ENST00000375299 SLC9A1P19634 815 aa23.07■■□□□ 1.28
UPF3A-202ENST00000375299 MAGOHP61326 146 aaKnown RBP23.07■■□□□ 1.28
UPF3A-202ENST00000375299 LACTB2Q53H82 288 aaPredicted RBP23.07■■□□□ 1.28
UPF3A-202ENST00000375299 HERC4Q5GLZ8 1057 aaPredicted RBP23.07■■□□□ 1.28
UPF3A-202ENST00000375299 PEX26Q7Z412 305 aa23.07■■□□□ 1.28
UPF3A-202ENST00000375299 DNAAF5Q86Y56 855 aa23.07■■□□□ 1.28
UPF3A-202ENST00000375299 PARP9Q8IXQ6 854 aa23.07■■□□□ 1.28
UPF3A-202ENST00000375299 MAGOHBQ96A72 148 aaKnown RBP23.07■■□□□ 1.28
UPF3A-202ENST00000375299 MCM8Q9UJA3 840 aa23.07■■□□□ 1.28
UPF3A-202ENST00000375299 STXBP5LQ9Y2K9 1186 aa23.07■■□□□ 1.28
UPF3A-202ENST00000375299 LDHCP07864 332 aa23.07■■□□□ 1.28
UPF3A-202ENST00000375299 UCHL3P15374 230 aa23.07■■□□□ 1.28
UPF3A-202ENST00000375299 CACNB1Q02641 598 aaPredicted RBP23.07■■□□□ 1.28
UPF3A-202ENST00000375299 KRT71Q3SY84 523 aa23.07■■□□□ 1.28
UPF3A-202ENST00000375299 WLSQ5T9L3 541 aa23.07■■□□□ 1.28
UPF3A-202ENST00000375299 SLFN11Q7Z7L1 901 aa23.07■■□□□ 1.28
UPF3A-202ENST00000375299 GIMAP7Q8NHV1 300 aa23.07■■□□□ 1.28
UPF3A-202ENST00000375299 SEC14L1Q92503 715 aa23.07■■□□□ 1.28
UPF3A-202ENST00000375299 FAM114A2Q9NRY5 505 aa23.07■■□□□ 1.28
UPF3A-202ENST00000375299 NENFQ9UMX5 172 aa23.07■■□□□ 1.28
UPF3A-202ENST00000375299 F8VZ95 297 aa23.06■■□□□ 1.28
UPF3A-202ENST00000375299 FLOT1O75955 427 aa23.06■■□□□ 1.28
UPF3A-202ENST00000375299 PLA2G4BP0C869 781 aa23.06■■□□□ 1.28
UPF3A-202ENST00000375299 PDHBP11177 359 aa23.06■■□□□ 1.28
UPF3A-202ENST00000375299 PRKCIP41743 596 aa23.06■■□□□ 1.28
UPF3A-202ENST00000375299 NOVP48745 357 aa23.06■■□□□ 1.28
UPF3A-202ENST00000375299 CCDC50Q8IVM0 306 aa23.06■■□□□ 1.28
UPF3A-202ENST00000375299 LMBR1Q8WVP7 490 aa23.06■■□□□ 1.28
UPF3A-202ENST00000375299 GJA10Q969M2 543 aa23.06■■□□□ 1.28
UPF3A-202ENST00000375299 RTFDC1Q9BY42 306 aaPredicted RBP23.06■■□□□ 1.28
UPF3A-202ENST00000375299 HAUS2Q9NVX0 235 aa23.06■■□□□ 1.28
UPF3A-202ENST00000375299 SUCLA2Q9P2R7 463 aaPredicted RBP23.06■■□□□ 1.28
UPF3A-202ENST00000375299 NPHP3-ACAD11A0A0J9YXS1 232 aa23.06■■□□□ 1.28
UPF3A-202ENST00000375299 DCDC2CA8MYV0 355 aa23.06■■□□□ 1.28
UPF3A-202ENST00000375299 GNPATO15228 680 aa23.06■■□□□ 1.28
UPF3A-202ENST00000375299 TTI1O43156 1089 aa23.06■■□□□ 1.28
UPF3A-202ENST00000375299 C21orf2O43822 256 aa23.06■■□□□ 1.28
UPF3A-202ENST00000375299 MARCH6O60337 910 aa23.06■■□□□ 1.28
UPF3A-202ENST00000375299 NR2F2P24468 414 aa23.06■■□□□ 1.28
UPF3A-202ENST00000375299 SCTRP47872 440 aa23.06■■□□□ 1.28
UPF3A-202ENST00000375299 GKAP1Q5VSY0 366 aaPredicted RBP23.06■■□□□ 1.28
UPF3A-202ENST00000375299 GPBP1Q86WP2 473 aa23.06■■□□□ 1.28
UPF3A-202ENST00000375299 P3H4Q92791 437 aa23.06■■□□□ 1.28
UPF3A-202ENST00000375299 SGSM3Q96HU1 749 aa23.06■■□□□ 1.28
UPF3A-202ENST00000375299 PSMD1Q99460 953 aa23.06■■□□□ 1.28
UPF3A-202ENST00000375299 ARFGEF1Q9Y6D6 1849 aa23.05■■□□□ 1.28
UPF3A-202ENST00000375299 BACH1O14867 736 aa23.05■■□□□ 1.28
UPF3A-202ENST00000375299 ANXA13P27216 316 aa23.05■■□□□ 1.28
UPF3A-202ENST00000375299 DHX9Q08211 1270 aaKnown RBP23.05■■□□□ 1.28
UPF3A-202ENST00000375299 UBE2SQ16763 222 aa23.05■■□□□ 1.28
UPF3A-202ENST00000375299 PCDHA12Q9UN75 941 aa23.05■■□□□ 1.28
UPF3A-202ENST00000375299 KIAA1024Q9UPX6 916 aa23.05■■□□□ 1.28
UPF3A-202ENST00000375299 A0A0A6YYK5 440 aaPredicted RBP23.05■■□□□ 1.28
UPF3A-202ENST00000375299 AFPP02771 609 aaKnown RBP23.05■■□□□ 1.28
UPF3A-202ENST00000375299 SYCE1Q8N0S2 351 aa23.05■■□□□ 1.28
UPF3A-202ENST00000375299 RBM46Q8TBY0 533 aaKnown RBP23.05■■□□□ 1.28
UPF3A-202ENST00000375299 CNOT10Q9H9A5 744 aaKnown RBP23.05■■□□□ 1.28
UPF3A-202ENST00000375299 PPP1R18Q6NYC8 613 aa23.04■■□□□ 1.28
UPF3A-202ENST00000375299 FRMD5Q7Z6J6 570 aa23.04■■□□□ 1.28
UPF3A-202ENST00000375299 SLC51AQ86UW1 340 aa23.04■■□□□ 1.28
UPF3A-202ENST00000375299 UTP11Q9Y3A2 253 aaKnown RBP23.04■■□□□ 1.28
UPF3A-202ENST00000375299 H2AFZP0C0S5 128 aa23.04■■□□□ 1.28
UPF3A-202ENST00000375299 CYP11B2P19099 503 aa23.04■■□□□ 1.28
UPF3A-202ENST00000375299 DRD4P21917 467 aa23.04■■□□□ 1.28
UPF3A-202ENST00000375299 PON1P27169 355 aa23.04■■□□□ 1.28
UPF3A-202ENST00000375299 BTDP43251 543 aa23.04■■□□□ 1.28
UPF3A-202ENST00000375299 EXOC3L4Q17RC7 722 aa23.04■■□□□ 1.28
UPF3A-202ENST00000375299 ASPRV1Q53RT3 343 aa23.04■■□□□ 1.28
UPF3A-202ENST00000375299 H2AFVQ71UI9 128 aa23.04■■□□□ 1.28
UPF3A-202ENST00000375299 CPLX4Q7Z7G2 160 aa23.04■■□□□ 1.28
UPF3A-202ENST00000375299 NT5DC3Q86UY8 548 aa23.04■■□□□ 1.28
UPF3A-202ENST00000375299 TAX1BP1Q86VP1 789 aa23.04■■□□□ 1.28
UPF3A-202ENST00000375299 TLCD1Q96CP7 247 aa23.04■■□□□ 1.28
UPF3A-202ENST00000375299 CELF4Q9BZC1 486 aaKnown RBP23.04■■□□□ 1.28
UPF3A-202ENST00000375299 DPH5Q9H2P9 285 aa23.04■■□□□ 1.28
UPF3A-202ENST00000375299 SWAP70Q9UH65 585 aa23.04■■□□□ 1.28
UPF3A-202ENST00000375299 FRMD3A2A2Y4 597 aa23.03■■□□□ 1.28
UPF3A-202ENST00000375299 GHRP10912 638 aa23.03■■□□□ 1.28
UPF3A-202ENST00000375299 CLK2P49760 499 aaKnown RBP23.03■■□□□ 1.28
UPF3A-202ENST00000375299 XRCC4Q13426 336 aa23.03■■□□□ 1.28
UPF3A-202ENST00000375299 SPDYCQ5MJ68 293 aa23.03■■□□□ 1.28
UPF3A-202ENST00000375299 MAGEC3Q8TD91 643 aa23.03■■□□□ 1.28
UPF3A-202ENST00000375299 ARMCX3Q9UH62 379 aaPredicted RBP23.03■■□□□ 1.28
UPF3A-202ENST00000375299 TNRC6CQ9HCJ0 1690 aaKnown RBP23.03■■□□□ 1.28
UPF3A-202ENST00000375299 PHF20L1A8MW92 1017 aa23.03■■□□□ 1.28
UPF3A-202ENST00000375299 EIF3BP55884 814 aaKnown RBP23.03■■□□□ 1.28
UPF3A-202ENST00000375299 KCTD19Q17RG1 926 aaPredicted RBP23.03■■□□□ 1.28
UPF3A-202ENST00000375299 DAAM2Q86T65 1068 aa23.03■■□□□ 1.28
UPF3A-202ENST00000375299 FAM228AQ86W67 206 aa23.03■■□□□ 1.28
UPF3A-202ENST00000375299 AMIGO3Q86WK7 504 aa23.03■■□□□ 1.28
Retrieved 100 of 20,778 RNA–protein pairs in 15.6 ms