RNA–Protein interactions for RNA: ENST00000373602.9

CCDC28B-201, Transcript of coiled-coil domain containing 28B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC28B, Length 1,089 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-201ENST00000373602 UNC80Q8N2C7 3258 aa24.62■■□□□ 1.53
CCDC28B-201ENST00000373602 LPXNO60711 386 aa24.61■■□□□ 1.53
CCDC28B-201ENST00000373602 KRT76Q01546 638 aa24.61■■□□□ 1.53
CCDC28B-201ENST00000373602 GRB10Q13322 594 aa24.61■■□□□ 1.53
CCDC28B-201ENST00000373602 IER5Q5VY09 327 aa24.61■■□□□ 1.53
CCDC28B-201ENST00000373602 SWSAP1Q6NVH7 229 aa24.61■■□□□ 1.53
CCDC28B-201ENST00000373602 MTHFD1LQ6UB35 978 aa24.61■■□□□ 1.53
CCDC28B-201ENST00000373602 SMAP1Q8IYB5 467 aaPredicted RBP24.61■■□□□ 1.53
CCDC28B-201ENST00000373602 SP7Q8TDD2 431 aaPredicted RBP24.61■■□□□ 1.53
CCDC28B-201ENST00000373602 TGS1Q96RS0 853 aaKnown RBP24.61■■□□□ 1.53
CCDC28B-201ENST00000373602 C22orf23Q9BZE7 217 aa24.61■■□□□ 1.53
CCDC28B-201ENST00000373602 SMIM35A0A1B0GVV1 85 aa24.6■■□□□ 1.53
CCDC28B-201ENST00000373602 SCRN1Q12765 414 aa24.6■■□□□ 1.53
CCDC28B-201ENST00000373602 PDXDC2PQ6P474 469 aa24.6■■□□□ 1.53
CCDC28B-201ENST00000373602 MICALL1Q8N3F8 863 aa24.6■■□□□ 1.53
CCDC28B-201ENST00000373602 DAGLBQ8NCG7 672 aa24.6■■□□□ 1.53
CCDC28B-201ENST00000373602 AIFM3Q96NN9 605 aa24.6■■□□□ 1.53
CCDC28B-201ENST00000373602 THEGQ9P2T0 379 aa24.6■■□□□ 1.53
CCDC28B-201ENST00000373602 SQORQ9Y6N5 450 aa24.6■■□□□ 1.53
CCDC28B-201ENST00000373602 COL1A2P08123 1366 aa24.59■■□□□ 1.53
CCDC28B-201ENST00000373602 M0R2N6 131 aa24.59■■□□□ 1.53
CCDC28B-201ENST00000373602 ATP4AP20648 1035 aa24.59■■□□□ 1.53
CCDC28B-201ENST00000373602 NPY5RQ15761 445 aa24.59■■□□□ 1.53
CCDC28B-201ENST00000373602 GALNT17Q6IS24 598 aa24.59■■□□□ 1.53
CCDC28B-201ENST00000373602 TSHZ1Q6ZSZ6 1077 aa24.59■■□□□ 1.53
CCDC28B-201ENST00000373602 BLIDQ8IZY5 108 aa24.59■■□□□ 1.53
CCDC28B-201ENST00000373602 TBCKQ8TEA7 893 aa24.59■■□□□ 1.53
CCDC28B-201ENST00000373602 ATXN2LQ8WWM7 1075 aaKnown RBP24.59■■□□□ 1.53
CCDC28B-201ENST00000373602 IL17RAQ96F46 866 aa24.59■■□□□ 1.53
CCDC28B-201ENST00000373602 SLKQ9H2G2 1235 aaPredicted RBP24.59■■□□□ 1.53
CCDC28B-201ENST00000373602 TCEAL9Q9UHQ7 104 aa24.59■■□□□ 1.53
CCDC28B-201ENST00000373602 TPCN1Q9ULQ1 816 aa24.59■■□□□ 1.53
CCDC28B-201ENST00000373602 PCDHA10Q9Y5I2 948 aa24.59■■□□□ 1.53
CCDC28B-201ENST00000373602 MAFBQ9Y5Q3 323 aaPredicted RBP24.59■■□□□ 1.53
CCDC28B-201ENST00000373602 TRPV2Q9Y5S1 764 aa24.59■■□□□ 1.53
CCDC28B-201ENST00000373602 PRRC2BQ5JSZ5 2229 aaKnown RBP24.59■■□□□ 1.53
CCDC28B-201ENST00000373602 MSH4O15457 936 aa24.58■■□□□ 1.53
CCDC28B-201ENST00000373602 PFKFB2O60825 505 aa24.58■■□□□ 1.53
CCDC28B-201ENST00000373602 CDKL5O76039 1030 aa24.58■■□□□ 1.53
CCDC28B-201ENST00000373602 UPP2O95045 317 aa24.58■■□□□ 1.53
CCDC28B-201ENST00000373602 CENPBP07199 599 aaPredicted RBP24.58■■□□□ 1.53
CCDC28B-201ENST00000373602 PSAPP07602 524 aa24.58■■□□□ 1.53
CCDC28B-201ENST00000373602 KLRC1P26715 233 aa24.58■■□□□ 1.53
CCDC28B-201ENST00000373602 TJAP1Q5JTD0 557 aa24.58■■□□□ 1.53
CCDC28B-201ENST00000373602 ZNF484Q5JVG2 852 aa24.58■■□□□ 1.53
CCDC28B-201ENST00000373602 KRT40Q6A162 431 aa24.58■■□□□ 1.53
CCDC28B-201ENST00000373602 NME8Q8N427 588 aa24.58■■□□□ 1.53
CCDC28B-201ENST00000373602 AGO3Q9H9G7 860 aaKnown RBP24.58■■□□□ 1.53
CCDC28B-201ENST00000373602 SUGCTQ9HAC7 445 aa24.58■■□□□ 1.53
CCDC28B-201ENST00000373602 MTUS1Q9ULD2 1270 aa24.58■■□□□ 1.53
CCDC28B-201ENST00000373602 A0A0C4DFX4 3053 aa24.58■■□□□ 1.53
CCDC28B-201ENST00000373602 PRUNE2Q8WUY3 3088 aa24.58■■□□□ 1.52
CCDC28B-201ENST00000373602 M0QZ92 97 aa24.57■■□□□ 1.52
CCDC28B-201ENST00000373602 TMEM62Q0P6H9 643 aa24.57■■□□□ 1.52
CCDC28B-201ENST00000373602 GDPD5Q8WTR4 605 aa24.57■■□□□ 1.52
CCDC28B-201ENST00000373602 BBXQ8WY36 941 aaPredicted RBP24.57■■□□□ 1.52
CCDC28B-201ENST00000373602 SYMPKQ92797 1274 aaKnown RBP24.57■■□□□ 1.52
CCDC28B-201ENST00000373602 YME1L1Q96TA2 773 aa24.57■■□□□ 1.52
CCDC28B-201ENST00000373602 RIT2Q99578 217 aa24.57■■□□□ 1.52
CCDC28B-201ENST00000373602 TSPYL2Q9H2G4 693 aaPredicted RBP24.57■■□□□ 1.52
CCDC28B-201ENST00000373602 LMCD1Q9NZU5 365 aa24.57■■□□□ 1.52
CCDC28B-201ENST00000373602 STK36Q9NRP7 1315 aa24.57■■□□□ 1.52
CCDC28B-201ENST00000373602 KDM3AQ9Y4C1 1321 aa24.57■■□□□ 1.52
CCDC28B-201ENST00000373602 COL4A4P53420 1690 aaPredicted RBP24.56■■□□□ 1.52
CCDC28B-201ENST00000373602 CUL9Q8IWT3 2517 aa24.56■■□□□ 1.52
CCDC28B-201ENST00000373602 ZBTB42B2RXF5 422 aa24.56■■□□□ 1.52
CCDC28B-201ENST00000373602 ENPP3O14638 875 aa24.56■■□□□ 1.52
CCDC28B-201ENST00000373602 ANKRD1Q15327 319 aa24.56■■□□□ 1.52
CCDC28B-201ENST00000373602 Q4G0T1 1027 aa24.56■■□□□ 1.52
CCDC28B-201ENST00000373602 CKAP2LQ8IYA6 745 aa24.56■■□□□ 1.52
CCDC28B-201ENST00000373602 SLC5A5Q92911 643 aa24.56■■□□□ 1.52
CCDC28B-201ENST00000373602 C17orf80Q9BSJ5 609 aa24.56■■□□□ 1.52
CCDC28B-201ENST00000373602 CELF4Q9BZC1 486 aaKnown RBP24.56■■□□□ 1.52
CCDC28B-201ENST00000373602 GABBR1Q9UBS5 961 aa24.56■■□□□ 1.52
CCDC28B-201ENST00000373602 COL4A6Q14031 1691 aa24.56■■□□□ 1.52
CCDC28B-201ENST00000373602 CYP3A7-CYP3A51PA0A087WV96 503 aa24.55■■□□□ 1.52
CCDC28B-201ENST00000373602 WDR64B1ANS9 1081 aa24.55■■□□□ 1.52
CCDC28B-201ENST00000373602 EIF5BO60841 1220 aaKnown RBP24.55■■□□□ 1.52
CCDC28B-201ENST00000373602 CYP3A7P24462 503 aa24.55■■□□□ 1.52
CCDC28B-201ENST00000373602 CD52P31358 61 aa24.55■■□□□ 1.52
CCDC28B-201ENST00000373602 KIAA0319LQ8IZA0 1049 aa24.55■■□□□ 1.52
CCDC28B-201ENST00000373602 IGSF9BQ9UPX0 1349 aa24.55■■□□□ 1.52
CCDC28B-201ENST00000373602 AK2P54819 239 aa24.54■■□□□ 1.52
CCDC28B-201ENST00000373602 MOXD1Q6UVY6 613 aa24.54■■□□□ 1.52
CCDC28B-201ENST00000373602 MBOAT7Q96N66 472 aa24.54■■□□□ 1.52
CCDC28B-201ENST00000373602 SAMD11Q96NU1 681 aa24.54■■□□□ 1.52
CCDC28B-201ENST00000373602 ASB2Q96Q27 587 aa24.54■■□□□ 1.52
CCDC28B-201ENST00000373602 PHF20Q9BVI0 1012 aa24.54■■□□□ 1.52
CCDC28B-201ENST00000373602 DISC1Q9NRI5 854 aa24.54■■□□□ 1.52
CCDC28B-201ENST00000373602 KCNJ14Q9UNX9 436 aa24.54■■□□□ 1.52
CCDC28B-201ENST00000373602 SAMM50Q9Y512 469 aa24.54■■□□□ 1.52
CCDC28B-201ENST00000373602 MYH9P35579 1960 aaKnown RBP24.54■■□□□ 1.52
CCDC28B-201ENST00000373602 GAS7O60861 476 aa24.53■■□□□ 1.52
CCDC28B-201ENST00000373602 TDP2O95551 362 aa24.53■■□□□ 1.52
CCDC28B-201ENST00000373602 C22orf31O95567 290 aa24.53■■□□□ 1.52
CCDC28B-201ENST00000373602 MRPS5P82675 430 aaKnown RBP24.53■■□□□ 1.52
CCDC28B-201ENST00000373602 NONOQ15233 471 aaKnown RBP eCLIP24.53■■□□□ 1.52
CCDC28B-201ENST00000373602 LRCH2Q5VUJ6 765 aa24.53■■□□□ 1.52
CCDC28B-201ENST00000373602 KRT25Q7Z3Z0 450 aa24.53■■□□□ 1.52
CCDC28B-201ENST00000373602 FBXO22Q8NEZ5 403 aa24.53■■□□□ 1.52
Retrieved 100 of 20,778 RNA–protein pairs in 35 ms