RNA–Protein interactions for RNA: ENST00000356352.6

UPF2-201, Transcript of UPF2, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF2, Length 5,569 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF2-201ENST00000356352 TSPY1Q01534 308 aa6.94□□□□□ -1.3
UPF2-201ENST00000356352 KYAT1Q16773 422 aa6.94□□□□□ -1.3
UPF2-201ENST00000356352 CYP4F22Q6NT55 531 aa6.94□□□□□ -1.3
UPF2-201ENST00000356352 EFHBQ8N7U6 833 aa6.94□□□□□ -1.3
UPF2-201ENST00000356352 URGCPQ8TCY9 931 aa6.94□□□□□ -1.3
UPF2-201ENST00000356352 GANCQ8TET4 914 aa6.94□□□□□ -1.3
UPF2-201ENST00000356352 SH3TC2Q8TF17 1288 aa6.94□□□□□ -1.3
UPF2-201ENST00000356352 KLHL29Q96CT2 875 aa6.94□□□□□ -1.3
UPF2-201ENST00000356352 CENPKQ9BS16 269 aa6.94□□□□□ -1.3
UPF2-201ENST00000356352 CYP26B1Q9NR63 512 aa6.94□□□□□ -1.3
UPF2-201ENST00000356352 TRIM33Q9UPN9 1127 aa6.94□□□□□ -1.3
UPF2-201ENST00000356352 PCDHA5Q9Y5H7 936 aa6.94□□□□□ -1.3
UPF2-201ENST00000356352 SYNGAP1Q96PV0 1343 aa6.94□□□□□ -1.3
UPF2-201ENST00000356352 PZPP20742 1482 aa6.94□□□□□ -1.3
UPF2-201ENST00000356352 ATP7BP35670 1465 aa6.94□□□□□ -1.3
UPF2-201ENST00000356352 CLRN2A0PK11 232 aa6.94□□□□□ -1.3
UPF2-201ENST00000356352 SLC4A1P02730 911 aa6.94□□□□□ -1.3
UPF2-201ENST00000356352 NPR1P16066 1061 aa6.94□□□□□ -1.3
UPF2-201ENST00000356352 EEF1B2P24534 225 aaKnown RBP6.94□□□□□ -1.3
UPF2-201ENST00000356352 PSMA2P25787 234 aa6.94□□□□□ -1.3
UPF2-201ENST00000356352 IFNAR2P48551 515 aa6.94□□□□□ -1.3
UPF2-201ENST00000356352 CCT5P48643 541 aa6.94□□□□□ -1.3
UPF2-201ENST00000356352 ARL4CP56559 192 aa6.94□□□□□ -1.3
UPF2-201ENST00000356352 OCRLQ01968 901 aa6.94□□□□□ -1.3
UPF2-201ENST00000356352 KIF23Q02241 960 aaPredicted RBP6.94□□□□□ -1.3
UPF2-201ENST00000356352 PPARDQ03181 441 aa6.94□□□□□ -1.3
UPF2-201ENST00000356352 KLHL38Q2WGJ6 581 aa6.94□□□□□ -1.3
UPF2-201ENST00000356352 ZNF667Q5HYK9 610 aa6.94□□□□□ -1.3
UPF2-201ENST00000356352 PDXDC2PQ6P474 469 aa6.94□□□□□ -1.3
UPF2-201ENST00000356352 LRRC31Q6UY01 552 aa6.94□□□□□ -1.3
UPF2-201ENST00000356352 TOGARAM2Q6ZUX3 1019 aa6.94□□□□□ -1.3
UPF2-201ENST00000356352 MCPH1Q8NEM0 835 aa6.94□□□□□ -1.3
UPF2-201ENST00000356352 EDC3Q96F86 508 aaKnown RBP6.94□□□□□ -1.3
UPF2-201ENST00000356352 MYCBPQ99417 103 aaPredicted RBP6.94□□□□□ -1.3
UPF2-201ENST00000356352 NEUROG2Q9H2A3 272 aa6.94□□□□□ -1.3
UPF2-201ENST00000356352 OSBPL3Q9H4L5 887 aa6.94□□□□□ -1.3
UPF2-201ENST00000356352 PCIF1Q9H4Z3 704 aa6.94□□□□□ -1.3
UPF2-201ENST00000356352 GCC2Q8IWJ2 1684 aa6.94□□□□□ -1.3
UPF2-201ENST00000356352 CTNND1O60716 968 aaKnown RBP6.94□□□□□ -1.3
UPF2-201ENST00000356352 PFDN1O60925 122 aa6.94□□□□□ -1.3
UPF2-201ENST00000356352 LRRN2O75325 713 aa6.94□□□□□ -1.3
UPF2-201ENST00000356352 KRT38O76015 456 aa6.94□□□□□ -1.3
UPF2-201ENST00000356352 ESRRAP11474 423 aaPredicted RBP6.94□□□□□ -1.3
UPF2-201ENST00000356352 COPB2P35606 906 aa6.94□□□□□ -1.3
UPF2-201ENST00000356352 PTK2BQ14289 1009 aa6.94□□□□□ -1.3
UPF2-201ENST00000356352 TBCCQ15814 346 aa6.94□□□□□ -1.3
UPF2-201ENST00000356352 TMEM179Q6ZVK1 233 aa6.94□□□□□ -1.3
UPF2-201ENST00000356352 ACAD11Q709F0 780 aa6.94□□□□□ -1.3
UPF2-201ENST00000356352 ST13P4Q8IZP2 240 aaPredicted RBP6.94□□□□□ -1.3
UPF2-201ENST00000356352 NSUN7Q8NE18 718 aaKnown RBP6.94□□□□□ -1.3
UPF2-201ENST00000356352 ACAP3Q96P50 834 aa6.94□□□□□ -1.3
UPF2-201ENST00000356352 FMO2Q99518 471 aa6.94□□□□□ -1.3
UPF2-201ENST00000356352 COA1Q9GZY4 146 aa6.94□□□□□ -1.3
UPF2-201ENST00000356352 TMEM60Q9H2L4 133 aa6.94□□□□□ -1.3
UPF2-201ENST00000356352 ITM2BQ9Y287 266 aa6.94□□□□□ -1.3
UPF2-201ENST00000356352 USP17L3A6NCW0 530 aa6.93□□□□□ -1.3
UPF2-201ENST00000356352 USP17L4A6NCW7 530 aa6.93□□□□□ -1.3
UPF2-201ENST00000356352 MCF2P10911 925 aa6.93□□□□□ -1.3
UPF2-201ENST00000356352 IFNAR1P17181 557 aa6.93□□□□□ -1.3
UPF2-201ENST00000356352 NCF2P19878 526 aaPredicted RBP6.93□□□□□ -1.3
UPF2-201ENST00000356352 PHKA2P46019 1235 aa6.93□□□□□ -1.3
UPF2-201ENST00000356352 IFT88Q13099 833 aa6.93□□□□□ -1.3
UPF2-201ENST00000356352 KIF19Q2TAC6 998 aa6.93□□□□□ -1.3
UPF2-201ENST00000356352 USP17L1Q7RTZ2 530 aa6.93□□□□□ -1.3
UPF2-201ENST00000356352 WDR75Q8IWA0 830 aaKnown RBP6.93□□□□□ -1.3
UPF2-201ENST00000356352 SPICE1Q8N0Z3 855 aa6.93□□□□□ -1.3
UPF2-201ENST00000356352 FAF2Q96CS3 445 aa6.93□□□□□ -1.3
UPF2-201ENST00000356352 IFT43Q96FT9 208 aa6.93□□□□□ -1.3
UPF2-201ENST00000356352 NDE1Q9NXR1 346 aa6.93□□□□□ -1.3
UPF2-201ENST00000356352 STX18Q9P2W9 335 aaKnown RBP6.93□□□□□ -1.3
UPF2-201ENST00000356352 ADGBQ8N7X0 1667 aa6.93□□□□□ -1.3
UPF2-201ENST00000356352 MYBL1P10243 752 aa6.93□□□□□ -1.3
UPF2-201ENST00000356352 NNMTP40261 264 aa6.93□□□□□ -1.3
UPF2-201ENST00000356352 MDM2Q00987 491 aaPredicted RBP6.93□□□□□ -1.3
UPF2-201ENST00000356352 RNF217Q8TC41 542 aa6.93□□□□□ -1.3
UPF2-201ENST00000356352 C2orf40Q9H1Z8 148 aa6.93□□□□□ -1.3
UPF2-201ENST00000356352 SPATS2LQ9NUQ6 558 aaKnown RBP6.93□□□□□ -1.3
UPF2-201ENST00000356352 L3MBTL1Q9Y468 752 aa6.93□□□□□ -1.3
UPF2-201ENST00000356352 K7ERI5 159 aa6.93□□□□□ -1.3
UPF2-201ENST00000356352 CLIC2O15247 247 aa6.93□□□□□ -1.3
UPF2-201ENST00000356352 MOCS3O95396 460 aa6.93□□□□□ -1.3
UPF2-201ENST00000356352 ESRRBO95718 433 aa6.93□□□□□ -1.3
UPF2-201ENST00000356352 UBXN2AP68543 259 aa6.93□□□□□ -1.3
UPF2-201ENST00000356352 DALRD3Q5D0E6 543 aaKnown RBP6.93□□□□□ -1.3
UPF2-201ENST00000356352 KCTD16Q68DU8 428 aa6.93□□□□□ -1.3
UPF2-201ENST00000356352 CIAPIN1Q6FI81 312 aa6.93□□□□□ -1.3
UPF2-201ENST00000356352 EMBQ6PCB8 327 aa6.93□□□□□ -1.3
UPF2-201ENST00000356352 PROM2Q8N271 834 aa6.93□□□□□ -1.3
UPF2-201ENST00000356352 IL17REQ8NFR9 667 aa6.93□□□□□ -1.3
UPF2-201ENST00000356352 MORC4Q8TE76 937 aa6.93□□□□□ -1.3
UPF2-201ENST00000356352 LZICQ8WZA0 190 aa6.93□□□□□ -1.3
UPF2-201ENST00000356352 DNAJC17Q9NVM6 304 aaKnown RBP6.93□□□□□ -1.3
UPF2-201ENST00000356352 FEM1BQ9UK73 627 aa6.93□□□□□ -1.3
UPF2-201ENST00000356352 FIS1Q9Y3D6 152 aa6.93□□□□□ -1.3
UPF2-201ENST00000356352 SPAG7O75391 227 aa6.93□□□□□ -1.3
UPF2-201ENST00000356352 GDF11O95390 407 aa6.93□□□□□ -1.3
UPF2-201ENST00000356352 ZNF18P17022 549 aa6.93□□□□□ -1.3
UPF2-201ENST00000356352 TBXAS1P24557 533 aaPredicted RBP6.93□□□□□ -1.3
UPF2-201ENST00000356352 DDIT3P35638 169 aa6.93□□□□□ -1.3
UPF2-201ENST00000356352 LIFRP42702 1097 aa6.93□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 24.6 ms