RNA–Protein interactions for RNA: ENST00000348544.4

VPS39-202, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS39, Length 2,661 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-202ENST00000348544 DAGLBQ8NCG7 672 aa7.4□□□□□ -1.22
VPS39-202ENST00000348544 TPCN2Q8NHX9 752 aa7.4□□□□□ -1.22
VPS39-202ENST00000348544 CCDC26Q8TAB7 109 aa7.4□□□□□ -1.22
VPS39-202ENST00000348544 PGM2Q96G03 612 aa7.4□□□□□ -1.22
VPS39-202ENST00000348544 NLRP3Q96P20 1036 aa7.4□□□□□ -1.22
VPS39-202ENST00000348544 PNMA5Q96PV4 448 aa7.4□□□□□ -1.22
VPS39-202ENST00000348544 FMO2Q99518 471 aa7.4□□□□□ -1.22
VPS39-202ENST00000348544 FAM167BQ9BTA0 163 aa7.4□□□□□ -1.22
VPS39-202ENST00000348544 YIPF3Q9GZM5 350 aa7.4□□□□□ -1.22
VPS39-202ENST00000348544 CCDC134Q9H6E4 229 aa7.4□□□□□ -1.22
VPS39-202ENST00000348544 AZI2Q9H6S1 392 aa7.4□□□□□ -1.22
VPS39-202ENST00000348544 HOMER3Q9NSC5 361 aa7.4□□□□□ -1.22
VPS39-202ENST00000348544 STXBP5LQ9Y2K9 1186 aa7.4□□□□□ -1.22
VPS39-202ENST00000348544 THRAP3Q9Y2W1 955 aaKnown RBP7.4□□□□□ -1.22
VPS39-202ENST00000348544 CD2APQ9Y5K6 639 aa7.4□□□□□ -1.22
VPS39-202ENST00000348544 WTIPA6NIX2 430 aaPredicted RBP7.4□□□□□ -1.23
VPS39-202ENST00000348544 SMIM23A6NLE4 172 aa7.4□□□□□ -1.23
VPS39-202ENST00000348544 IRF6O14896 467 aa7.4□□□□□ -1.23
VPS39-202ENST00000348544 SNX3O60493 162 aa7.4□□□□□ -1.23
VPS39-202ENST00000348544 FGFR1OPO95684 399 aaKnown RBP7.4□□□□□ -1.23
VPS39-202ENST00000348544 VIMP08670 466 aaKnown RBP7.4□□□□□ -1.23
VPS39-202ENST00000348544 NUDT17P0C025 328 aa7.4□□□□□ -1.23
VPS39-202ENST00000348544 CCND1P24385 295 aa7.4□□□□□ -1.23
VPS39-202ENST00000348544 COPB2P35606 906 aa7.4□□□□□ -1.23
VPS39-202ENST00000348544 ASIC2Q16515 512 aa7.4□□□□□ -1.23
VPS39-202ENST00000348544 LETM2Q2VYF4 491 aa7.4□□□□□ -1.23
VPS39-202ENST00000348544 NBPF20Q3BBV1 942 aa7.4□□□□□ -1.23
VPS39-202ENST00000348544 ANKRD20A2Q5SQ80 823 aa7.4□□□□□ -1.23
VPS39-202ENST00000348544 ANKRD20A1Q5TYW2 823 aa7.4□□□□□ -1.23
VPS39-202ENST00000348544 ANKRD20A3Q5VUR7 823 aa7.4□□□□□ -1.23
VPS39-202ENST00000348544 AP1ARQ63HQ0 302 aa7.4□□□□□ -1.23
VPS39-202ENST00000348544 SV2BQ7L1I2 683 aa7.4□□□□□ -1.23
VPS39-202ENST00000348544 MAEAQ7L5Y9 396 aa7.4□□□□□ -1.23
VPS39-202ENST00000348544 HEATR3Q7Z4Q2 680 aa7.4□□□□□ -1.23
VPS39-202ENST00000348544 IRF2BP2Q7Z5L9 587 aa7.4□□□□□ -1.23
VPS39-202ENST00000348544 DZIP3Q86Y13 1208 aaKnown RBP7.4□□□□□ -1.23
VPS39-202ENST00000348544 ZCRB1Q8TBF4 217 aaKnown RBP7.4□□□□□ -1.23
VPS39-202ENST00000348544 FGFBP2Q9BYJ0 223 aa7.4□□□□□ -1.23
VPS39-202ENST00000348544 FAM114A2Q9NRY5 505 aa7.4□□□□□ -1.23
VPS39-202ENST00000348544 INTS9Q9NV88 658 aaKnown RBP7.4□□□□□ -1.23
VPS39-202ENST00000348544 ETAA1Q9NY74 926 aa7.4□□□□□ -1.23
VPS39-202ENST00000348544 ADAM22Q9P0K1 906 aa7.4□□□□□ -1.23
VPS39-202ENST00000348544 SAMD15Q9P1V8 674 aa7.4□□□□□ -1.23
VPS39-202ENST00000348544 PNMA3Q9UL41 463 aa7.4□□□□□ -1.23
VPS39-202ENST00000348544 TRIM33Q9UPN9 1127 aa7.4□□□□□ -1.23
VPS39-202ENST00000348544 COL4A3BPQ9Y5P4 624 aa7.4□□□□□ -1.23
VPS39-202ENST00000348544 ANKRD36CQ5JPF3 1778 aa7.4□□□□□ -1.23
VPS39-202ENST00000348544 PVALEFA0A1B0GWK0 134 aa7.39□□□□□ -1.23
VPS39-202ENST00000348544 TLDC2A0PJX2 215 aa7.39□□□□□ -1.23
VPS39-202ENST00000348544 LIN7AO14910 233 aaPredicted RBP7.39□□□□□ -1.23
VPS39-202ENST00000348544 MAP3K13O43283 966 aa7.39□□□□□ -1.23
VPS39-202ENST00000348544 CCNT1O60563 726 aaKnown RBP7.39□□□□□ -1.23
VPS39-202ENST00000348544 KLRC3Q07444 240 aa7.39□□□□□ -1.23
VPS39-202ENST00000348544 DPY19L2P1Q6NXN4 242 aa7.39□□□□□ -1.23
VPS39-202ENST00000348544 KCNK18Q7Z418 384 aa7.39□□□□□ -1.23
VPS39-202ENST00000348544 SLFN11Q7Z7L1 901 aa7.39□□□□□ -1.23
VPS39-202ENST00000348544 HOOK3Q86VS8 718 aa7.39□□□□□ -1.23
VPS39-202ENST00000348544 TRIM59Q8IWR1 403 aa7.39□□□□□ -1.23
VPS39-202ENST00000348544 NENFQ9UMX5 172 aa7.39□□□□□ -1.23
VPS39-202ENST00000348544 COL4A1P02462 1669 aa7.39□□□□□ -1.23
VPS39-202ENST00000348544 EVI5O60447 810 aa7.39□□□□□ -1.23
VPS39-202ENST00000348544 SNUPNO95149 360 aaKnown RBP7.39□□□□□ -1.23
VPS39-202ENST00000348544 PCP11498 1178 aaKnown RBP7.39□□□□□ -1.23
VPS39-202ENST00000348544 ACTN1P12814 892 aa7.39□□□□□ -1.23
VPS39-202ENST00000348544 KIF5BP33176 963 aa7.39□□□□□ -1.23
VPS39-202ENST00000348544 BNIP1Q12981 228 aa7.39□□□□□ -1.23
VPS39-202ENST00000348544 SNX1Q13596 522 aa7.39□□□□□ -1.23
VPS39-202ENST00000348544 NKX1-1Q15270 411 aaPredicted RBP7.39□□□□□ -1.23
VPS39-202ENST00000348544 SPDYCQ5MJ68 293 aa7.39□□□□□ -1.23
VPS39-202ENST00000348544 DCAF12L1Q5VU92 463 aa7.39□□□□□ -1.23
VPS39-202ENST00000348544 DUPD1Q68J44 220 aa7.39□□□□□ -1.23
VPS39-202ENST00000348544 ZDHHC24Q6UX98 284 aa7.39□□□□□ -1.23
VPS39-202ENST00000348544 PEX26Q7Z412 305 aa7.39□□□□□ -1.23
VPS39-202ENST00000348544 NT5DC3Q86UY8 548 aa7.39□□□□□ -1.23
VPS39-202ENST00000348544 KCNV2Q8TDN2 545 aa7.39□□□□□ -1.23
VPS39-202ENST00000348544 LARP4BQ92615 738 aaKnown RBP7.39□□□□□ -1.23
VPS39-202ENST00000348544 NUDT12Q9BQG2 462 aa7.39□□□□□ -1.23
VPS39-202ENST00000348544 PABPC3Q9H361 631 aaKnown RBP7.39□□□□□ -1.23
VPS39-202ENST00000348544 ERVK-5Q9HDB9 667 aa7.39□□□□□ -1.23
VPS39-202ENST00000348544 ARHGEF3Q9NR81 526 aa7.39□□□□□ -1.23
VPS39-202ENST00000348544 BARHL2Q9NY43 387 aa7.39□□□□□ -1.23
VPS39-202ENST00000348544 MAD2L2Q9UI95 211 aa7.39□□□□□ -1.23
VPS39-202ENST00000348544 NAGPAQ9UK23 515 aa7.39□□□□□ -1.23
VPS39-202ENST00000348544 UTP11Q9Y3A2 253 aaKnown RBP7.39□□□□□ -1.23
VPS39-202ENST00000348544 RPTORQ8N122 1335 aa7.38□□□□□ -1.23
VPS39-202ENST00000348544 TOGARAM1Q9Y4F4 1720 aa7.38□□□□□ -1.23
VPS39-202ENST00000348544 SPDYE3A6NKU9 549 aa7.38□□□□□ -1.23
VPS39-202ENST00000348544 TRAF5O00463 557 aa7.38□□□□□ -1.23
VPS39-202ENST00000348544 FGGP02679 453 aa7.38□□□□□ -1.23
VPS39-202ENST00000348544 RAB27AP51159 221 aa7.38□□□□□ -1.23
VPS39-202ENST00000348544 CCNG1P51959 295 aa7.38□□□□□ -1.23
VPS39-202ENST00000348544 PMS2P54278 862 aa7.38□□□□□ -1.23
VPS39-202ENST00000348544 SLC29A2Q14542 456 aa7.38□□□□□ -1.23
VPS39-202ENST00000348544 PLS1Q14651 629 aa7.38□□□□□ -1.23
VPS39-202ENST00000348544 CNGA2Q16280 664 aa7.38□□□□□ -1.23
VPS39-202ENST00000348544 IFI16Q16666 785 aaKnown RBP7.38□□□□□ -1.23
VPS39-202ENST00000348544 ASRGL1Q7L266 308 aa7.38□□□□□ -1.23
VPS39-202ENST00000348544 ANKLE1Q8NAG6 615 aa7.38□□□□□ -1.23
VPS39-202ENST00000348544 NEK9Q8TD19 979 aa7.38□□□□□ -1.23
VPS39-202ENST00000348544 EPS8L3Q8TE67 593 aaKnown RBP7.38□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms