RNA–Protein interactions for RNA: ENST00000341753.10

TRIM28-202, Transcript of tripartite motif containing 28, humanhuman

TSL 1 (best) BASIC

Gene TRIM28, Length 2,709 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-202ENST00000341753 LDHCP07864 332 aa24.44■■□□□ 1.5
TRIM28-202ENST00000341753 GTF2IP78347 998 aa24.44■■□□□ 1.5
TRIM28-202ENST00000341753 ADAM9Q13443 819 aa24.44■■□□□ 1.5
TRIM28-202ENST00000341753 ANKRD20A8PQ5CZ79 823 aa24.44■■□□□ 1.5
TRIM28-202ENST00000341753 HERC4Q5GLZ8 1057 aaPredicted RBP24.44■■□□□ 1.5
TRIM28-202ENST00000341753 GIMAP7Q8NHV1 300 aa24.44■■□□□ 1.5
TRIM28-202ENST00000341753 TBC1D16Q8TBP0 767 aa24.44■■□□□ 1.5
TRIM28-202ENST00000341753 RAB34Q9BZG1 259 aa24.44■■□□□ 1.5
TRIM28-202ENST00000341753 AFF2P51816 1311 aa24.43■■□□□ 1.5
TRIM28-202ENST00000341753 RHBDL3P58872 404 aa24.43■■□□□ 1.5
TRIM28-202ENST00000341753 CYB5D1Q6P9G0 228 aa24.43■■□□□ 1.5
TRIM28-202ENST00000341753 SNED1Q8TER0 1413 aa24.43■■□□□ 1.5
TRIM28-202ENST00000341753 ADCY7P51828 1080 aa24.43■■□□□ 1.5
TRIM28-202ENST00000341753 DHX9Q08211 1270 aaKnown RBP24.43■■□□□ 1.5
TRIM28-202ENST00000341753 PAXIP1Q6ZW49 1069 aaPredicted RBP24.43■■□□□ 1.5
TRIM28-202ENST00000341753 ADAT2Q7Z6V5 191 aaKnown RBP24.43■■□□□ 1.5
TRIM28-202ENST00000341753 LRRC57Q8N9N7 239 aa24.43■■□□□ 1.5
TRIM28-202ENST00000341753 ROBO3Q96MS0 1386 aa24.43■■□□□ 1.5
TRIM28-202ENST00000341753 CLSTN1O94985 981 aa24.42■■□□□ 1.5
TRIM28-202ENST00000341753 E2F5Q15329 346 aa24.42■■□□□ 1.5
TRIM28-202ENST00000341753 IRF2BP2Q7Z5L9 587 aa24.42■■□□□ 1.5
TRIM28-202ENST00000341753 FAM228AQ86W67 206 aa24.42■■□□□ 1.5
TRIM28-202ENST00000341753 FUKQ8N0W3 1084 aa24.42■■□□□ 1.5
TRIM28-202ENST00000341753 SCFD1Q8WVM8 642 aa24.42■■□□□ 1.5
TRIM28-202ENST00000341753 TRIM51Q9BSJ1 452 aa24.42■■□□□ 1.5
TRIM28-202ENST00000341753 THSD7AQ9UPZ6 1657 aa24.42■■□□□ 1.5
TRIM28-202ENST00000341753 GPR75-ASB3A0A0A6YYF3 556 aa24.42■■□□□ 1.5
TRIM28-202ENST00000341753 CRY2Q49AN0 593 aa24.42■■□□□ 1.5
TRIM28-202ENST00000341753 RUFY4Q6ZNE9 571 aa24.42■■□□□ 1.5
TRIM28-202ENST00000341753 A1CFQ9NQ94 594 aaKnown RBP24.42■■□□□ 1.5
TRIM28-202ENST00000341753 KIAA1024Q9UPX6 916 aa24.42■■□□□ 1.5
TRIM28-202ENST00000341753 COPB2P35606 906 aa24.41■■□□□ 1.5
TRIM28-202ENST00000341753 PLCB4Q15147 1175 aa24.41■■□□□ 1.5
TRIM28-202ENST00000341753 ALKBH5Q6P6C2 394 aaKnown RBP24.41■■□□□ 1.5
TRIM28-202ENST00000341753 PEX26Q7Z412 305 aa24.41■■□□□ 1.5
TRIM28-202ENST00000341753 CPLX4Q7Z7G2 160 aa24.41■■□□□ 1.5
TRIM28-202ENST00000341753 PARP9Q8IXQ6 854 aa24.41■■□□□ 1.5
TRIM28-202ENST00000341753 CACNA2D3Q8IZS8 1091 aa24.41■■□□□ 1.5
TRIM28-202ENST00000341753 ACTRT1Q8TDG2 376 aa24.41■■□□□ 1.5
TRIM28-202ENST00000341753 PBKQ96KB5 322 aa24.41■■□□□ 1.5
TRIM28-202ENST00000341753 BUD13Q9BRD0 619 aaKnown RBP eCLIP24.41■■□□□ 1.56e-10■□□□□ 10.3
TRIM28-202ENST00000341753 GGA2Q9UJY4 613 aa24.41■■□□□ 1.5
TRIM28-202ENST00000341753 NAGPAQ9UK23 515 aa24.41■■□□□ 1.5
TRIM28-202ENST00000341753 MYH4Q9Y623 1939 aa24.41■■□□□ 1.5
TRIM28-202ENST00000341753 LRRC47Q8N1G4 583 aaKnown RBP24.41■■□□□ 1.5
TRIM28-202ENST00000341753 HAS1Q92839 578 aa24.41■■□□□ 1.5
TRIM28-202ENST00000341753 RBM17Q96I25 401 aaKnown RBP24.41■■□□□ 1.5
TRIM28-202ENST00000341753 GPCPD1Q9NPB8 672 aa24.41■■□□□ 1.5
TRIM28-202ENST00000341753 EPB41L3Q9Y2J2 1087 aaPredicted RBP24.41■■□□□ 1.5
TRIM28-202ENST00000341753 ATP8A1Q9Y2Q0 1164 aa24.41■■□□□ 1.5
TRIM28-202ENST00000341753 ATP2B4P23634 1241 aa24.41■■□□□ 1.5
TRIM28-202ENST00000341753 SCTRP47872 440 aa24.41■■□□□ 1.5
TRIM28-202ENST00000341753 BIRC3Q13489 604 aa24.41■■□□□ 1.5
TRIM28-202ENST00000341753 PDIA5Q14554 519 aa24.41■■□□□ 1.5
TRIM28-202ENST00000341753 SNCBQ16143 134 aa24.41■■□□□ 1.5
TRIM28-202ENST00000341753 C16orf86Q6ZW13 317 aa24.41■■□□□ 1.5
TRIM28-202ENST00000341753 TMC3Q7Z5M5 1100 aa24.41■■□□□ 1.5
TRIM28-202ENST00000341753 TPCN2Q8NHX9 752 aa24.41■■□□□ 1.5
TRIM28-202ENST00000341753 RBM46Q8TBY0 533 aaKnown RBP24.41■■□□□ 1.5
TRIM28-202ENST00000341753 CEP63Q96MT8 703 aa24.41■■□□□ 1.5
TRIM28-202ENST00000341753 AJAP1Q9UKB5 411 aaPredicted RBP24.41■■□□□ 1.5
TRIM28-202ENST00000341753 NR2E1Q9Y466 385 aa24.41■■□□□ 1.5
TRIM28-202ENST00000341753 NAV1Q8NEY1 1877 aa24.4■■□□□ 1.5
TRIM28-202ENST00000341753 LY75O60449 1722 aa24.4■■□□□ 1.5
TRIM28-202ENST00000341753 TRIM37O94972 964 aa24.4■■□□□ 1.5
TRIM28-202ENST00000341753 IL1R1P14778 569 aa24.4■■□□□ 1.5
TRIM28-202ENST00000341753 CASP5P51878 434 aa24.4■■□□□ 1.5
TRIM28-202ENST00000341753 GJB7Q6PEY0 223 aa24.4■■□□□ 1.5
TRIM28-202ENST00000341753 GPBP1Q86WP2 473 aa24.4■■□□□ 1.5
TRIM28-202ENST00000341753 EMILIN3Q9NT22 766 aa24.4■■□□□ 1.5
TRIM28-202ENST00000341753 DDX25Q9UHL0 483 aaKnown RBP24.4■■□□□ 1.5
TRIM28-202ENST00000341753 HDAC9Q9UKV0 1011 aa24.4■■□□□ 1.5
TRIM28-202ENST00000341753 POTEB3A0JP26 581 aa24.4■■□□□ 1.5
TRIM28-202ENST00000341753 POTECB2RU33 542 aa24.4■■□□□ 1.5
TRIM28-202ENST00000341753 NR2F2P24468 414 aa24.4■■□□□ 1.5
TRIM28-202ENST00000341753 IFFO1Q0D2I5 559 aa24.4■■□□□ 1.5
TRIM28-202ENST00000341753 PREPLQ4J6C6 727 aaPredicted RBP24.4■■□□□ 1.5
TRIM28-202ENST00000341753 DCAF17Q5H9S7 520 aaPredicted RBP24.4■■□□□ 1.5
TRIM28-202ENST00000341753 POTEBQ6S5H4 581 aa24.4■■□□□ 1.5
TRIM28-202ENST00000341753 DHX37Q8IY37 1157 aaKnown RBP24.4■■□□□ 1.5
TRIM28-202ENST00000341753 KCTD10Q9H3F6 313 aa24.4■■□□□ 1.5
TRIM28-202ENST00000341753 ACTR5Q9H9F9 607 aaPredicted RBP24.4■■□□□ 1.5
TRIM28-202ENST00000341753 BMP2KQ9NSY1 1161 aaPredicted RBP24.4■■□□□ 1.5
TRIM28-202ENST00000341753 MCM8Q9UJA3 840 aa24.4■■□□□ 1.5
TRIM28-202ENST00000341753 TPX2Q9ULW0 747 aaKnown RBP24.4■■□□□ 1.5
TRIM28-202ENST00000341753 UCHL3P15374 230 aa24.39■■□□□ 1.5
TRIM28-202ENST00000341753 ARHGAP27Q6ZUM4 889 aa24.39■■□□□ 1.5
TRIM28-202ENST00000341753 DAAM2Q86T65 1068 aa24.39■■□□□ 1.5
TRIM28-202ENST00000341753 N4BP2L2Q92802 583 aaPredicted RBP24.39■■□□□ 1.5
TRIM28-202ENST00000341753 LRRC27Q9C0I9 530 aa24.39■■□□□ 1.5
TRIM28-202ENST00000341753 PCDHA2Q9Y5H9 948 aa24.39■■□□□ 1.5
TRIM28-202ENST00000341753 SMIM23A6NLE4 172 aa24.39■■□□□ 1.49
TRIM28-202ENST00000341753 NEDD9Q14511 834 aa24.39■■□□□ 1.49
TRIM28-202ENST00000341753 PNMA2Q9UL42 364 aa24.39■■□□□ 1.49
TRIM28-202ENST00000341753 KRT18P05783 430 aaKnown RBP24.38■■□□□ 1.49
TRIM28-202ENST00000341753 ZBTB48P10074 688 aaPredicted RBP24.38■■□□□ 1.49
TRIM28-202ENST00000341753 DRP2Q13474 957 aa24.38■■□□□ 1.49
TRIM28-202ENST00000341753 CERKQ8TCT0 537 aa24.38■■□□□ 1.49
TRIM28-202ENST00000341753 TATDN2Q93075 761 aa24.38■■□□□ 1.49
TRIM28-202ENST00000341753 DAGLAQ9Y4D2 1042 aa24.38■■□□□ 1.49
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms