RNA–Protein interactions for RNA: ENST00000339859.8

USP54-201, Transcript of ubiquitin specific peptidase 54, humanhuman

APPRIS P1 TSL 5 BASIC

Gene USP54, Length 6,247 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-201ENST00000339859 MOV10L1Q9BXT6 1211 aaKnown RBP11.08□□□□□ -0.64
USP54-201ENST00000339859 SUCLA2Q9P2R7 463 aaPredicted RBP11.08□□□□□ -0.64
USP54-201ENST00000339859 ASAP2O43150 1006 aa11.08□□□□□ -0.64
USP54-201ENST00000339859 RRAGAQ7L523 313 aa11.08□□□□□ -0.64
USP54-201ENST00000339859 MAP2K1Q02750 393 aaPredicted RBP11.07□□□□□ -0.64
USP54-201ENST00000339859 TMTC1Q8IUR5 882 aa11.07□□□□□ -0.64
USP54-201ENST00000339859 TAF1DQ9H5J8 278 aaPredicted RBP11.07□□□□□ -0.64
USP54-201ENST00000339859 FAM207AQ9NSI2 230 aaPredicted RBP11.07□□□□□ -0.64
USP54-201ENST00000339859 HBP1O60381 514 aa11.07□□□□□ -0.64
USP54-201ENST00000339859 LRRC41Q15345 812 aa11.07□□□□□ -0.64
USP54-201ENST00000339859 CCDC122Q5T0U0 273 aa11.07□□□□□ -0.64
USP54-201ENST00000339859 CNTNAP5Q8WYK1 1306 aa11.07□□□□□ -0.64
USP54-201ENST00000339859 TAAR1Q96RJ0 339 aa11.07□□□□□ -0.64
USP54-201ENST00000339859 TRIM17Q9Y577 477 aa11.07□□□□□ -0.64
USP54-201ENST00000339859 CLIC2O15247 247 aa11.07□□□□□ -0.64
USP54-201ENST00000339859 OATP04181 439 aa11.07□□□□□ -0.64
USP54-201ENST00000339859 HADHQ16836 314 aaKnown RBP11.07□□□□□ -0.64
USP54-201ENST00000339859 PDZD4Q76G19 769 aaPredicted RBP11.07□□□□□ -0.64
USP54-201ENST00000339859 TEX2Q8IWB9 1127 aa11.07□□□□□ -0.64
USP54-201ENST00000339859 CCDC114Q96M63 670 aa11.07□□□□□ -0.64
USP54-201ENST00000339859 MYPNQ86TC9 1320 aa11.07□□□□□ -0.64
USP54-201ENST00000339859 ZC3H4Q9UPT8 1303 aaKnown RBP11.07□□□□□ -0.64
USP54-201ENST00000339859 ESYT2A0FGR8 921 aa11.07□□□□□ -0.64
USP54-201ENST00000339859 ERCC5P28715 1186 aaPredicted RBP11.07□□□□□ -0.64
USP54-201ENST00000339859 TSPY1Q01534 308 aa11.07□□□□□ -0.64
USP54-201ENST00000339859 PDIA5Q14554 519 aa11.07□□□□□ -0.64
USP54-201ENST00000339859 SREK1Q8WXA9 508 aaKnown RBP11.07□□□□□ -0.64
USP54-201ENST00000339859 RIT2Q99578 217 aa11.07□□□□□ -0.64
USP54-201ENST00000339859 ASCC2Q9H1I8 757 aaPredicted RBP11.07□□□□□ -0.64
USP54-201ENST00000339859 SLC12A6Q9UHW9 1150 aa11.07□□□□□ -0.64
USP54-201ENST00000339859 DOT1LQ8TEK3 1739 aa11.07□□□□□ -0.64
USP54-201ENST00000339859 FSD2A1L4K1 749 aa11.07□□□□□ -0.64
USP54-201ENST00000339859 PTPRAP18433 802 aa11.07□□□□□ -0.64
USP54-201ENST00000339859 CGNQ9P2M7 1197 aaKnown RBP11.07□□□□□ -0.64
USP54-201ENST00000339859 RWDD2AQ9UIY3 292 aa11.07□□□□□ -0.64
USP54-201ENST00000339859 USTQ9Y2C2 406 aa11.07□□□□□ -0.64
USP54-201ENST00000339859 NDC80O14777 642 aa11.06□□□□□ -0.64
USP54-201ENST00000339859 EYA4O95677 639 aa11.06□□□□□ -0.64
USP54-201ENST00000339859 ATP2A2P16615 1042 aaKnown RBP11.06□□□□□ -0.64
USP54-201ENST00000339859 RPS6P62753 249 aaKnown RBP11.06□□□□□ -0.64
USP54-201ENST00000339859 FKBP3Q00688 224 aaKnown RBP11.06□□□□□ -0.64
USP54-201ENST00000339859 LRRC63Q05C16 580 aa11.06□□□□□ -0.64
USP54-201ENST00000339859 BFSP2Q13515 415 aa11.06□□□□□ -0.64
USP54-201ENST00000339859 TAF3Q5VWG9 929 aa11.06□□□□□ -0.64
USP54-201ENST00000339859 CEP128Q6ZU80 1094 aa11.06□□□□□ -0.64
USP54-201ENST00000339859 GABPB2Q8TAK5 448 aaPredicted RBP11.06□□□□□ -0.64
USP54-201ENST00000339859 JAKMIP2Q96AA8 810 aa11.06□□□□□ -0.64
USP54-201ENST00000339859 WNK4Q96J92 1243 aa11.06□□□□□ -0.64
USP54-201ENST00000339859 POTECB2RU33 542 aa11.06□□□□□ -0.64
USP54-201ENST00000339859 TRPA1O75762 1119 aa11.06□□□□□ -0.64
USP54-201ENST00000339859 EEF1GP26641 437 aaKnown RBP11.06□□□□□ -0.64
USP54-201ENST00000339859 CFAP58Q5T655 872 aa11.06□□□□□ -0.64
USP54-201ENST00000339859 TRIM11Q96F44 468 aa11.06□□□□□ -0.64
USP54-201ENST00000339859 C16orf45Q96MC5 204 aaPredicted RBP11.06□□□□□ -0.64
USP54-201ENST00000339859 FAM204AQ9H8W3 233 aa11.06□□□□□ -0.64
USP54-201ENST00000339859 KCPQ6ZWJ8 1503 aa11.06□□□□□ -0.64
USP54-201ENST00000339859 E7EVH7 732 aa11.06□□□□□ -0.64
USP54-201ENST00000339859 CSPG5O95196 566 aa11.06□□□□□ -0.64
USP54-201ENST00000339859 KCTD17Q8N5Z5 321 aa11.06□□□□□ -0.64
USP54-201ENST00000339859 THAP12O43422 761 aa11.06□□□□□ -0.64
USP54-201ENST00000339859 DGAT1O75907 488 aa11.06□□□□□ -0.64
USP54-201ENST00000339859 ANTXR2P58335 489 aa11.06□□□□□ -0.64
USP54-201ENST00000339859 KRT81Q14533 505 aa11.06□□□□□ -0.64
USP54-201ENST00000339859 PPP1R7Q15435 360 aa11.06□□□□□ -0.64
USP54-201ENST00000339859 THNSL1Q8IYQ7 743 aa11.06□□□□□ -0.64
USP54-201ENST00000339859 THAP9Q9H5L6 903 aa11.06□□□□□ -0.64
USP54-201ENST00000339859 IFT122Q9HBG6 1241 aa11.06□□□□□ -0.64
USP54-201ENST00000339859 MYO1AQ9UBC5 1043 aa11.06□□□□□ -0.64
USP54-201ENST00000339859 TRPM3Q9HCF6 1732 aaPredicted RBP11.06□□□□□ -0.64
USP54-201ENST00000339859 MAIP1Q8WWC4 291 aa11.06□□□□□ -0.64
USP54-201ENST00000339859 EPSTI1Q96J88 318 aa11.06□□□□□ -0.64
USP54-201ENST00000339859 FAM198AQ9UFP1 575 aa11.06□□□□□ -0.64
USP54-201ENST00000339859 GOLGA6CA6NDK9 693 aa11.05□□□□□ -0.64
USP54-201ENST00000339859 GOLGA6BA6NDN3 693 aa11.05□□□□□ -0.64
USP54-201ENST00000339859 SLC16A4O15374 487 aa11.05□□□□□ -0.64
USP54-201ENST00000339859 NPM3O75607 178 aaKnown RBP11.05□□□□□ -0.64
USP54-201ENST00000339859 SUPT20HL2P0C7V6 817 aa11.05□□□□□ -0.64
USP54-201ENST00000339859 GOLGA6DP0CG33 693 aa11.05□□□□□ -0.64
USP54-201ENST00000339859 ERVK-9P63128 1117 aa11.05□□□□□ -0.64
USP54-201ENST00000339859 ERVK-24P63145 666 aa11.05□□□□□ -0.64
USP54-201ENST00000339859 INTS8Q75QN2 995 aaKnown RBP11.05□□□□□ -0.64
USP54-201ENST00000339859 TRIM50Q86XT4 487 aa11.05□□□□□ -0.64
USP54-201ENST00000339859 CEP112Q8N8E3 955 aa11.05□□□□□ -0.64
USP54-201ENST00000339859 DAGLBQ8NCG7 672 aa11.05□□□□□ -0.64
USP54-201ENST00000339859 GOLGA6AQ9NYA3 693 aa11.05□□□□□ -0.64
USP54-201ENST00000339859 KCND2Q9NZV8 630 aa11.05□□□□□ -0.64
USP54-201ENST00000339859 MAN1B1Q9UKM7 699 aa11.05□□□□□ -0.64
USP54-201ENST00000339859 CTAGE15A4D2H0 777 aa11.05□□□□□ -0.64
USP54-201ENST00000339859 E9PMD0 336 aa11.05□□□□□ -0.64
USP54-201ENST00000339859 KIAA0391O15091 583 aaKnown RBP11.05□□□□□ -0.64
USP54-201ENST00000339859 CTAGE8P0CG41 777 aa11.05□□□□□ -0.64
USP54-201ENST00000339859 PSMC4P43686 418 aa11.05□□□□□ -0.64
USP54-201ENST00000339859 PAK2Q13177 524 aa11.05□□□□□ -0.64
USP54-201ENST00000339859 CTAGE6Q86UF2 777 aa11.05□□□□□ -0.64
USP54-201ENST00000339859 CTAGE4Q8IX94 777 aa11.05□□□□□ -0.64
USP54-201ENST00000339859 U2AF1L4Q8WU68 220 aaKnown RBP11.05□□□□□ -0.64
USP54-201ENST00000339859 NLRC4Q9NPP4 1024 aa11.05□□□□□ -0.64
USP54-201ENST00000339859 DDX4Q9NQI0 724 aaKnown RBP11.05□□□□□ -0.64
USP54-201ENST00000339859 ESPNB1AK53 854 aa11.05□□□□□ -0.64
USP54-201ENST00000339859 RPS6KA5O75582 802 aa11.05□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 53.1 ms