RNA–Protein interactions for RNA: ENST00000338963.6

NEDD4-201, Transcript of neural precursor cell expressed, developmentally down-regulated 4, E3 ubiquitin protein ligase, humanhuman

TSL 1 (best) BASIC

Gene NEDD4, Length 7,019 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD4-201ENST00000338963 BTNL9Q6UXG8 535 aa4.47□□□□□ -1.69
NEDD4-201ENST00000338963 MAMSTRQ6ZN01 415 aa4.47□□□□□ -1.69
NEDD4-201ENST00000338963 TTC30AQ86WT1 665 aa4.47□□□□□ -1.69
NEDD4-201ENST00000338963 SFR1Q86XK3 245 aa4.47□□□□□ -1.69
NEDD4-201ENST00000338963 IQCKQ8N0W5 287 aa4.47□□□□□ -1.69
NEDD4-201ENST00000338963 SPICE1Q8N0Z3 855 aa4.47□□□□□ -1.69
NEDD4-201ENST00000338963 STARD8Q92502 1023 aa4.47□□□□□ -1.69
NEDD4-201ENST00000338963 PGM2Q96G03 612 aa4.47□□□□□ -1.69
NEDD4-201ENST00000338963 TPK1Q9H3S4 243 aa4.47□□□□□ -1.69
NEDD4-201ENST00000338963 GDF3Q9NR23 364 aa4.47□□□□□ -1.69
NEDD4-201ENST00000338963 SEPT3Q9UH03 358 aa4.47□□□□□ -1.69
NEDD4-201ENST00000338963 GUCA1BQ9UMX6 200 aa4.47□□□□□ -1.69
NEDD4-201ENST00000338963 PLAAQ9Y263 795 aa4.47□□□□□ -1.69
NEDD4-201ENST00000338963 ABCC5O15440 1437 aa4.47□□□□□ -1.69
NEDD4-201ENST00000338963 HAT1O14929 419 aa4.47□□□□□ -1.69
NEDD4-201ENST00000338963 OPHN1O60890 802 aa4.47□□□□□ -1.69
NEDD4-201ENST00000338963 NOL3O60936 208 aaKnown RBP4.47□□□□□ -1.69
NEDD4-201ENST00000338963 GNAZP19086 355 aa4.47□□□□□ -1.69
NEDD4-201ENST00000338963 ACADSBP45954 432 aa4.47□□□□□ -1.69
NEDD4-201ENST00000338963 APLP1P51693 650 aa4.47□□□□□ -1.69
NEDD4-201ENST00000338963 OCA2Q04671 838 aa4.47□□□□□ -1.69
NEDD4-201ENST00000338963 ASPHQ12797 758 aa4.47□□□□□ -1.69
NEDD4-201ENST00000338963 PTK7Q13308 1070 aa4.47□□□□□ -1.69
NEDD4-201ENST00000338963 MED21Q13503 144 aa4.47□□□□□ -1.69
NEDD4-201ENST00000338963 MAPRE2Q15555 327 aa4.47□□□□□ -1.69
NEDD4-201ENST00000338963 C1orf228Q6PIY5 440 aa4.47□□□□□ -1.69
NEDD4-201ENST00000338963 ACAD11Q709F0 780 aa4.47□□□□□ -1.69
NEDD4-201ENST00000338963 CABP7Q86V35 215 aa4.47□□□□□ -1.69
NEDD4-201ENST00000338963 ZBED8Q8IZ13 594 aa4.47□□□□□ -1.69
NEDD4-201ENST00000338963 SLC43A3Q8NBI5 491 aa4.47□□□□□ -1.69
NEDD4-201ENST00000338963 BORCS5Q969J3 196 aa4.47□□□□□ -1.69
NEDD4-201ENST00000338963 AIDAQ96BJ3 306 aa4.47□□□□□ -1.69
NEDD4-201ENST00000338963 NUP88Q99567 741 aaPredicted RBP4.47□□□□□ -1.69
NEDD4-201ENST00000338963 SH2D4AQ9H788 454 aa4.47□□□□□ -1.69
NEDD4-201ENST00000338963 RXFP1Q9HBX9 757 aa4.47□□□□□ -1.69
NEDD4-201ENST00000338963 PANK4Q9NVE7 773 aa4.47□□□□□ -1.69
NEDD4-201ENST00000338963 DDX43Q9NXZ2 648 aaKnown RBP4.47□□□□□ -1.69
NEDD4-201ENST00000338963 SEC63Q9UGP8 760 aaKnown RBP4.47□□□□□ -1.69
NEDD4-201ENST00000338963 ADGRL2O95490 1459 aa4.47□□□□□ -1.69
NEDD4-201ENST00000338963 ZC3H4Q9UPT8 1303 aaKnown RBP4.47□□□□□ -1.69
NEDD4-201ENST00000338963 GAS8O95995 478 aa4.47□□□□□ -1.69
NEDD4-201ENST00000338963 LYNP07948 512 aa4.47□□□□□ -1.69
NEDD4-201ENST00000338963 CDR2Q01850 454 aa4.47□□□□□ -1.69
NEDD4-201ENST00000338963 STX3Q13277 289 aa4.47□□□□□ -1.69
NEDD4-201ENST00000338963 TMTC4Q5T4D3 741 aa4.47□□□□□ -1.69
NEDD4-201ENST00000338963 CEP70Q8NHQ1 597 aa4.47□□□□□ -1.69
NEDD4-201ENST00000338963 BRF1Q92994 677 aa4.47□□□□□ -1.69
NEDD4-201ENST00000338963 LTV1Q96GA3 475 aaPredicted RBP4.47□□□□□ -1.69
NEDD4-201ENST00000338963 FERMT1Q9BQL6 677 aa4.47□□□□□ -1.69
NEDD4-201ENST00000338963 TCP11L1Q9NUJ3 509 aa4.47□□□□□ -1.69
NEDD4-201ENST00000338963 POLR3EQ9NVU0 708 aa4.47□□□□□ -1.69
NEDD4-201ENST00000338963 RRP7AQ9Y3A4 280 aaKnown RBP4.47□□□□□ -1.69
NEDD4-201ENST00000338963 VIRMAQ69YN4 1812 aaKnown RBP4.47□□□□□ -1.69
NEDD4-201ENST00000338963 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP4.47□□□□□ -1.69
NEDD4-201ENST00000338963 SPTLC2O15270 562 aa4.47□□□□□ -1.69
NEDD4-201ENST00000338963 ALDH2P05091 517 aa4.47□□□□□ -1.69
NEDD4-201ENST00000338963 GSTT2P0CG29 244 aa4.47□□□□□ -1.69
NEDD4-201ENST00000338963 GSTT2BP0CG30 244 aa4.47□□□□□ -1.69
NEDD4-201ENST00000338963 KRT5P13647 590 aa4.47□□□□□ -1.69
NEDD4-201ENST00000338963 MAN1A1P33908 653 aa4.47□□□□□ -1.69
NEDD4-201ENST00000338963 DSG1Q02413 1049 aa4.47□□□□□ -1.69
NEDD4-201ENST00000338963 TRIM67Q6ZTA4 783 aa4.47□□□□□ -1.69
NEDD4-201ENST00000338963 EXOC3L1Q86VI1 746 aa4.47□□□□□ -1.69
NEDD4-201ENST00000338963 RAPGEF5Q92565 580 aa4.47□□□□□ -1.69
NEDD4-201ENST00000338963 TSG101Q99816 390 aa4.47□□□□□ -1.69
NEDD4-201ENST00000338963 ASCC2Q9H1I8 757 aaPredicted RBP4.47□□□□□ -1.69
NEDD4-201ENST00000338963 INTS9Q9NV88 658 aaKnown RBP4.47□□□□□ -1.69
NEDD4-201ENST00000338963 ASAP1Q9ULH1 1129 aa4.47□□□□□ -1.69
NEDD4-201ENST00000338963 STK38LQ9Y2H1 464 aa4.47□□□□□ -1.69
NEDD4-201ENST00000338963 STXBP5LQ9Y2K9 1186 aa4.47□□□□□ -1.69
NEDD4-201ENST00000338963 CD2APQ9Y5K6 639 aa4.47□□□□□ -1.69
NEDD4-201ENST00000338963 GAKO14976 1311 aa4.47□□□□□ -1.69
NEDD4-201ENST00000338963 CFTRP13569 1480 aa4.46□□□□□ -1.69
NEDD4-201ENST00000338963 A0A1B0GTH6 734 aa4.46□□□□□ -1.69
NEDD4-201ENST00000338963 SH3PXD2BA1X283 911 aa4.46□□□□□ -1.69
NEDD4-201ENST00000338963 FAM47E-STBD1D6RA91 191 aa4.46□□□□□ -1.69
NEDD4-201ENST00000338963 KPNA4O00629 521 aaPredicted RBP4.46□□□□□ -1.69
NEDD4-201ENST00000338963 SERPINB7O75635 380 aa4.46□□□□□ -1.69
NEDD4-201ENST00000338963 IL4RP24394 825 aa4.46□□□□□ -1.69
NEDD4-201ENST00000338963 HNRNPFP52597 415 aaKnown RBP4.46□□□□□ -1.69
NEDD4-201ENST00000338963 CAMK2BQ13554 666 aa4.46□□□□□ -1.69
NEDD4-201ENST00000338963 PPP6R3Q5H9R7 873 aaPredicted RBP4.46□□□□□ -1.69
NEDD4-201ENST00000338963 HDGFL2Q7Z4V5 671 aaPredicted RBP4.46□□□□□ -1.69
NEDD4-201ENST00000338963 PIGWQ7Z7B1 504 aa4.46□□□□□ -1.69
NEDD4-201ENST00000338963 FMR1NBQ8N0W7 255 aaPredicted RBP4.46□□□□□ -1.69
NEDD4-201ENST00000338963 CATSPER1Q8NEC5 780 aa4.46□□□□□ -1.69
NEDD4-201ENST00000338963 RIN2Q8WYP3 895 aaPredicted RBP4.46□□□□□ -1.69
NEDD4-201ENST00000338963 ZNF184Q99676 751 aaPredicted RBP4.46□□□□□ -1.69
NEDD4-201ENST00000338963 CRNKL1Q9BZJ0 848 aaKnown RBP4.46□□□□□ -1.69
NEDD4-201ENST00000338963 CCDC113Q9H0I3 377 aa4.46□□□□□ -1.69
NEDD4-201ENST00000338963 TRIM10Q9UDY6 481 aa4.46□□□□□ -1.69
NEDD4-201ENST00000338963 BCAP29Q9UHQ4 241 aa4.46□□□□□ -1.69
NEDD4-201ENST00000338963 DMRT2Q9Y5R5 561 aa4.46□□□□□ -1.69
NEDD4-201ENST00000338963 CCNB1P14635 433 aa4.46□□□□□ -1.69
NEDD4-201ENST00000338963 PRKACBP22694 351 aa4.46□□□□□ -1.69
NEDD4-201ENST00000338963 NIPAL4Q0D2K0 466 aa4.46□□□□□ -1.69
NEDD4-201ENST00000338963 KRT71Q3SY84 523 aa4.46□□□□□ -1.69
NEDD4-201ENST00000338963 ANKDD1AQ495B1 522 aa4.46□□□□□ -1.69
NEDD4-201ENST00000338963 ERMARDQ5T6L9 678 aa4.46□□□□□ -1.69
NEDD4-201ENST00000338963 ZNF658Q5TYW1 1059 aaPredicted RBP4.46□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms