RNA–Protein interactions for RNA: ENST00000308508.5

CSPG4-201, Transcript of chondroitin sulfate proteoglycan 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CSPG4, Length 8,290 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4-201ENST00000308508 LRRC63Q05C16 580 aa14.86□□□□□ -0.03
CSPG4-201ENST00000308508 SUPT20HQ8NEM7 779 aa14.86□□□□□ -0.03
CSPG4-201ENST00000308508 FAM149B1Q96BN6 582 aa14.86□□□□□ -0.03
CSPG4-201ENST00000308508 SFMBT1Q9UHJ3 866 aa14.86□□□□□ -0.03
CSPG4-201ENST00000308508 NBPF20Q3BBV1 942 aa14.86□□□□□ -0.03
CSPG4-201ENST00000308508 ARL13BQ3SXY8 428 aa14.86□□□□□ -0.03
CSPG4-201ENST00000308508 SCG3Q8WXD2 468 aaKnown RBP14.86□□□□□ -0.03
CSPG4-201ENST00000308508 FAF2Q96CS3 445 aa14.86□□□□□ -0.03
CSPG4-201ENST00000308508 SMARCA1P28370 1054 aa14.86□□□□□ -0.03
CSPG4-201ENST00000308508 PLXNC1O60486 1568 aa14.86□□□□□ -0.03
CSPG4-201ENST00000308508 ACTN3Q08043 901 aaPredicted RBP14.85□□□□□ -0.03
CSPG4-201ENST00000308508 CDC37Q16543 378 aaPredicted RBP14.85□□□□□ -0.03
CSPG4-201ENST00000308508 NLRP14Q86W24 1093 aa14.85□□□□□ -0.03
CSPG4-201ENST00000308508 THAP11Q96EK4 314 aa14.85□□□□□ -0.03
CSPG4-201ENST00000308508 TRIM45Q9H8W5 580 aaPredicted RBP14.85□□□□□ -0.03
CSPG4-201ENST00000308508 ETNK1Q9HBU6 452 aa14.85□□□□□ -0.03
CSPG4-201ENST00000308508 TSC22D4Q9Y3Q8 395 aa14.85□□□□□ -0.03
CSPG4-201ENST00000308508 CCDC22O60826 627 aa14.85□□□□□ -0.03
CSPG4-201ENST00000308508 ANP32DO95626 131 aa14.85□□□□□ -0.03
CSPG4-201ENST00000308508 MKRN3Q13064 507 aaKnown RBP14.85□□□□□ -0.03
CSPG4-201ENST00000308508 EHD2Q9NZN4 543 aa14.85□□□□□ -0.03
CSPG4-201ENST00000308508 MED21Q13503 144 aa14.85□□□□□ -0.03
CSPG4-201ENST00000308508 HABP4Q5JVS0 413 aaKnown RBP14.85□□□□□ -0.03
CSPG4-201ENST00000308508 GJC2Q5T442 439 aaPredicted RBP14.85□□□□□ -0.03
CSPG4-201ENST00000308508 FAM47EQ6ZV65 393 aa14.85□□□□□ -0.03
CSPG4-201ENST00000308508 IP6K1Q92551 441 aa14.85□□□□□ -0.03
CSPG4-201ENST00000308508 DIABLOQ9NR28 239 aa14.85□□□□□ -0.03
CSPG4-201ENST00000308508 COBLO75128 1261 aa14.85□□□□□ -0.03
CSPG4-201ENST00000308508 KRT14P02533 472 aa14.85□□□□□ -0.03
CSPG4-201ENST00000308508 GCFC2P16383 781 aaKnown RBP14.85□□□□□ -0.03
CSPG4-201ENST00000308508 HOXC9P31274 260 aa14.85□□□□□ -0.03
CSPG4-201ENST00000308508 CC2D1AQ6P1N0 951 aaPredicted RBP14.85□□□□□ -0.03
CSPG4-201ENST00000308508 KIF9Q9HAQ2 790 aa14.85□□□□□ -0.03
CSPG4-201ENST00000308508 SEPT9Q9UHD8 586 aaPredicted RBP14.85□□□□□ -0.03
CSPG4-201ENST00000308508 THRAP3Q9Y2W1 955 aaKnown RBP14.85□□□□□ -0.03
CSPG4-201ENST00000308508 BLMP54132 1417 aaPredicted RBP14.85□□□□□ -0.03
CSPG4-201ENST00000308508 TMED10P49755 219 aaKnown RBP14.85□□□□□ -0.03
CSPG4-201ENST00000308508 SLC30A9Q6PML9 568 aa14.85□□□□□ -0.03
CSPG4-201ENST00000308508 SNX2O60749 519 aa14.85□□□□□ -0.03
CSPG4-201ENST00000308508 S100A5P33763 92 aa14.85□□□□□ -0.03
CSPG4-201ENST00000308508 RUBCNQ92622 972 aa14.85□□□□□ -0.03
CSPG4-201ENST00000308508 INSRP06213 1382 aa14.85□□□□□ -0.03
CSPG4-201ENST00000308508 FAM95CA0A1B0GW59 222 aa14.85□□□□□ -0.03
CSPG4-201ENST00000308508 CATSPER3Q86XQ3 398 aa14.85□□□□□ -0.03
CSPG4-201ENST00000308508 POLE3Q9NRF9 147 aa14.85□□□□□ -0.03
CSPG4-201ENST00000308508 WDR47O94967 919 aa14.84□□□□□ -0.03
CSPG4-201ENST00000308508 IL10P22301 178 aa14.84□□□□□ -0.03
CSPG4-201ENST00000308508 CCDC15Q0P6D6 951 aa14.84□□□□□ -0.03
CSPG4-201ENST00000308508 METTL23Q86XA0 190 aa14.84□□□□□ -0.03
CSPG4-201ENST00000308508 PKD2L2Q9NZM6 624 aa14.84□□□□□ -0.03
CSPG4-201ENST00000308508 CHL1O00533 1208 aa14.84□□□□□ -0.03
CSPG4-201ENST00000308508 ZRANB2O95218 330 aaKnown RBP eCLIP14.84□□□□□ -0.03
CSPG4-201ENST00000308508 SRGAP2CP0DJJ0 459 aa14.84□□□□□ -0.03
CSPG4-201ENST00000308508 KITP10721 976 aa14.84□□□□□ -0.03
CSPG4-201ENST00000308508 MAP4P27816 1152 aaKnown RBP14.84□□□□□ -0.03
CSPG4-201ENST00000308508 CYP4A11Q02928 519 aa14.84□□□□□ -0.03
CSPG4-201ENST00000308508 THOC1Q96FV9 657 aaKnown RBP14.84□□□□□ -0.03
CSPG4-201ENST00000308508 MTRQ99707 1265 aa14.84□□□□□ -0.03
CSPG4-201ENST00000308508 DONSONQ9NYP3 566 aa14.84□□□□□ -0.03
CSPG4-201ENST00000308508 UHRF1BP1Q6BDS2 1440 aa14.84□□□□□ -0.03
CSPG4-201ENST00000308508 COL17A1Q9UMD9 1497 aaPredicted RBP14.84□□□□□ -0.03
CSPG4-201ENST00000308508 MIF4GDA9UHW6 222 aaKnown RBP14.84□□□□□ -0.03
CSPG4-201ENST00000308508 WDR64B1ANS9 1081 aa14.84□□□□□ -0.03
CSPG4-201ENST00000308508 FGAP02671 866 aa14.84□□□□□ -0.03
CSPG4-201ENST00000308508 GYS2P54840 703 aa14.84□□□□□ -0.03
CSPG4-201ENST00000308508 KMT5AQ9NQR1 393 aa14.84□□□□□ -0.03
CSPG4-201ENST00000308508 TNRQ92752 1358 aa14.84□□□□□ -0.03
CSPG4-201ENST00000308508 DIAPH2O60879 1101 aa14.84□□□□□ -0.03
CSPG4-201ENST00000308508 NFKBIAP25963 317 aa14.84□□□□□ -0.03
CSPG4-201ENST00000308508 MECOMQ03112 1051 aa14.84□□□□□ -0.03
CSPG4-201ENST00000308508 POLA2Q14181 598 aa14.84□□□□□ -0.03
CSPG4-201ENST00000308508 SMCR8Q8TEV9 937 aaPredicted RBP14.84□□□□□ -0.03
CSPG4-201ENST00000308508 GTSE1Q9NYZ3 720 aa14.84□□□□□ -0.03
CSPG4-201ENST00000308508 SEMA3EO15041 775 aa14.84□□□□□ -0.03
CSPG4-201ENST00000308508 DENND4BO75064 1496 aaPredicted RBP14.84□□□□□ -0.03
CSPG4-201ENST00000308508 EIF4G3O43432 1585 aaKnown RBP14.84□□□□□ -0.03
CSPG4-201ENST00000308508 PRR23D1E9PI22 279 aaPredicted RBP14.84□□□□□ -0.03
CSPG4-201ENST00000308508 PRR23D2P0DMB1 279 aaPredicted RBP14.84□□□□□ -0.03
CSPG4-201ENST00000308508 RBM41Q96IZ5 413 aaKnown RBP14.84□□□□□ -0.03
CSPG4-201ENST00000308508 ASCC2Q9H1I8 757 aaPredicted RBP14.84□□□□□ -0.03
CSPG4-201ENST00000308508 KIAA0232Q92628 1395 aa14.84□□□□□ -0.03
CSPG4-201ENST00000308508 PLB1Q6P1J6 1458 aa14.84□□□□□ -0.03
CSPG4-201ENST00000308508 MFAP3LO75121 409 aa14.83□□□□□ -0.03
CSPG4-201ENST00000308508 ADCK1Q86TW2 530 aa14.83□□□□□ -0.03
CSPG4-201ENST00000308508 RASSF3Q86WH2 238 aa14.83□□□□□ -0.03
CSPG4-201ENST00000308508 EPAS1Q99814 870 aa14.83□□□□□ -0.03
CSPG4-201ENST00000308508 GNL3Q9BVP2 549 aaKnown RBP eCLIP14.83□□□□□ -0.03
CSPG4-201ENST00000308508 DMRT2Q9Y5R5 561 aa14.83□□□□□ -0.03
CSPG4-201ENST00000308508 ALCAMQ13740 583 aa14.83□□□□□ -0.04
CSPG4-201ENST00000308508 MAPRE2Q15555 327 aa14.83□□□□□ -0.04
CSPG4-201ENST00000308508 IMPG1Q17R60 797 aa14.83□□□□□ -0.04
CSPG4-201ENST00000308508 TTC13Q8NBP0 860 aa14.83□□□□□ -0.04
CSPG4-201ENST00000308508 SLC26A7Q8TE54 656 aa14.83□□□□□ -0.04
CSPG4-201ENST00000308508 GCOM2Q9BZD3 368 aaPredicted RBP14.83□□□□□ -0.04
CSPG4-201ENST00000308508 KIF21AQ7Z4S6 1674 aa14.83□□□□□ -0.04
CSPG4-201ENST00000308508 OCM2P0CE71 109 aa14.83□□□□□ -0.04
CSPG4-201ENST00000308508 OCMP0CE72 109 aaPredicted RBP14.83□□□□□ -0.04
CSPG4-201ENST00000308508 ALAS1P13196 640 aa14.83□□□□□ -0.04
CSPG4-201ENST00000308508 TNFAIP1Q13829 316 aa14.83□□□□□ -0.04
CSPG4-201ENST00000308508 LZTS1Q9Y250 596 aa14.83□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms