RNA–Protein interactions for RNA: ENST00000296043.6

SHROOM3-201, Transcript of shroom family member 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHROOM3, Length 11,020 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3-201ENST00000296043 USP15Q9Y4E8 981 aaPredicted RBP12.58□□□□□ -0.4
SHROOM3-201ENST00000296043 STRNO43815 780 aa12.57□□□□□ -0.4
SHROOM3-201ENST00000296043 PPP1R37O75864 691 aa12.57□□□□□ -0.4
SHROOM3-201ENST00000296043 PLEKHA7Q6IQ23 1121 aa12.57□□□□□ -0.4
SHROOM3-201ENST00000296043 KCNF1Q9H3M0 494 aa12.57□□□□□ -0.4
SHROOM3-201ENST00000296043 ZMYND8Q9ULU4 1186 aaPredicted RBP12.57□□□□□ -0.4
SHROOM3-201ENST00000296043 LVRNQ6Q4G3 990 aa12.57□□□□□ -0.4
SHROOM3-201ENST00000296043 PATL1Q86TB9 770 aaKnown RBP12.57□□□□□ -0.4
SHROOM3-201ENST00000296043 ANO3Q9BYT9 981 aa12.57□□□□□ -0.4
SHROOM3-201ENST00000296043 PIK3CAP42336 1068 aa12.57□□□□□ -0.4
SHROOM3-201ENST00000296043 MRPL12P52815 198 aaKnown RBP12.57□□□□□ -0.4
SHROOM3-201ENST00000296043 CCDC80Q76M96 950 aa12.57□□□□□ -0.4
SHROOM3-201ENST00000296043 RYBPQ8N488 228 aaPredicted RBP12.57□□□□□ -0.4
SHROOM3-201ENST00000296043 RPS6KC1Q96S38 1066 aa12.57□□□□□ -0.4
SHROOM3-201ENST00000296043 ZBTB18Q99592 522 aa12.57□□□□□ -0.4
SHROOM3-201ENST00000296043 RTEL1Q9NZ71 1219 aa12.57□□□□□ -0.4
SHROOM3-201ENST00000296043 TTC21BQ7Z4L5 1316 aa12.57□□□□□ -0.4
SHROOM3-201ENST00000296043 E7EWF7 191 aa12.57□□□□□ -0.4
SHROOM3-201ENST00000296043 GJA8P48165 433 aa12.57□□□□□ -0.4
SHROOM3-201ENST00000296043 ADAM9Q13443 819 aa12.57□□□□□ -0.4
SHROOM3-201ENST00000296043 MAPK11Q15759 364 aa12.57□□□□□ -0.4
SHROOM3-201ENST00000296043 ZNF555Q8NEP9 628 aa12.57□□□□□ -0.4
SHROOM3-201ENST00000296043 RIOK1Q9BRS2 568 aaKnown RBP12.57□□□□□ -0.4
SHROOM3-201ENST00000296043 CDV3Q9UKY7 258 aaKnown RBP12.57□□□□□ -0.4
SHROOM3-201ENST00000296043 SCAF11Q99590 1463 aaKnown RBP12.57□□□□□ -0.4
SHROOM3-201ENST00000296043 EIF2AK4Q9P2K8 1649 aaKnown RBP12.57□□□□□ -0.4
SHROOM3-201ENST00000296043 TTLL7Q6ZT98 887 aa12.57□□□□□ -0.4
SHROOM3-201ENST00000296043 NEK8Q86SG6 692 aa12.57□□□□□ -0.4
SHROOM3-201ENST00000296043 EME1Q96AY2 570 aa12.57□□□□□ -0.4
SHROOM3-201ENST00000296043 AGBL1Q96MI9 1066 aa12.57□□□□□ -0.4
SHROOM3-201ENST00000296043 HADHQ16836 314 aaKnown RBP12.57□□□□□ -0.4
SHROOM3-201ENST00000296043 TJAP1Q5JTD0 557 aa12.57□□□□□ -0.4
SHROOM3-201ENST00000296043 PHF21AQ96BD5 680 aa12.57□□□□□ -0.4
SHROOM3-201ENST00000296043 PCDHB4Q9Y5E5 795 aa12.57□□□□□ -0.4
SHROOM3-201ENST00000296043 CARMIL3Q8ND23 1372 aa12.57□□□□□ -0.4
SHROOM3-201ENST00000296043 K7ENM7 598 aa12.57□□□□□ -0.4
SHROOM3-201ENST00000296043 SERPINB2P05120 415 aa12.57□□□□□ -0.4
SHROOM3-201ENST00000296043 OTUD4Q01804 1114 aaKnown RBP12.57□□□□□ -0.4
SHROOM3-201ENST00000296043 HIC1Q14526 733 aa12.57□□□□□ -0.4
SHROOM3-201ENST00000296043 PARVBQ9HBI1 364 aa12.57□□□□□ -0.4
SHROOM3-201ENST00000296043 TARSL2A2RTX5 802 aaKnown RBP12.57□□□□□ -0.4
SHROOM3-201ENST00000296043 PRPF6O94906 941 aaKnown RBP12.57□□□□□ -0.4
SHROOM3-201ENST00000296043 ZCWPW2Q504Y3 356 aa12.57□□□□□ -0.4
SHROOM3-201ENST00000296043 KSR2Q6VAB6 950 aa12.57□□□□□ -0.4
SHROOM3-201ENST00000296043 SLC13A4Q9UKG4 626 aa12.57□□□□□ -0.4
SHROOM3-201ENST00000296043 KRT16P08779 473 aa12.57□□□□□ -0.4
SHROOM3-201ENST00000296043 APLFQ8IW19 511 aaPredicted RBP12.56□□□□□ -0.4
SHROOM3-201ENST00000296043 KRT73Q86Y46 540 aa12.56□□□□□ -0.4
SHROOM3-201ENST00000296043 NARS2Q96I59 477 aaKnown RBP12.56□□□□□ -0.4
SHROOM3-201ENST00000296043 TBC1D4O60343 1298 aa12.56□□□□□ -0.4
SHROOM3-201ENST00000296043 MARK3P27448 753 aa12.56□□□□□ -0.4
SHROOM3-201ENST00000296043 KRT27Q7Z3Y8 459 aa12.56□□□□□ -0.4
SHROOM3-201ENST00000296043 PLA2G4DQ86XP0 818 aa12.56□□□□□ -0.4
SHROOM3-201ENST00000296043 KCTD6Q8NC69 237 aa12.56□□□□□ -0.4
SHROOM3-201ENST00000296043 AGR3Q8TD06 166 aa12.56□□□□□ -0.4
SHROOM3-201ENST00000296043 NACA2Q9H009 215 aa12.56□□□□□ -0.4
SHROOM3-201ENST00000296043 CUEDC2Q9H467 287 aa12.56□□□□□ -0.4
SHROOM3-201ENST00000296043 SLC38A10Q9HBR0 1119 aa12.56□□□□□ -0.4
SHROOM3-201ENST00000296043 MRPL40Q9NQ50 206 aaKnown RBP12.56□□□□□ -0.4
SHROOM3-201ENST00000296043 MAGEA13PA6NCF6 341 aa12.56□□□□□ -0.4
SHROOM3-201ENST00000296043 DNALI1O14645 258 aaPredicted RBP12.56□□□□□ -0.4
SHROOM3-201ENST00000296043 ACADSP16219 412 aa12.56□□□□□ -0.4
SHROOM3-201ENST00000296043 KPNB1Q14974 876 aaKnown RBP12.56□□□□□ -0.4
SHROOM3-201ENST00000296043 PGBD1Q96JS3 809 aa12.56□□□□□ -0.4
SHROOM3-201ENST00000296043 NEUROG2Q9H2A3 272 aa12.56□□□□□ -0.4
SHROOM3-201ENST00000296043 SYNJ1O43426 1573 aa12.56□□□□□ -0.4
SHROOM3-201ENST00000296043 EFCAB5A4FU69 1503 aa12.56□□□□□ -0.4
SHROOM3-201ENST00000296043 VHLP40337 213 aa12.56□□□□□ -0.4
SHROOM3-201ENST00000296043 RAD21L1Q9H4I0 556 aa12.56□□□□□ -0.4
SHROOM3-201ENST00000296043 YWHAEP62258 255 aaKnown RBP12.56□□□□□ -0.4
SHROOM3-201ENST00000296043 NOL6Q9H6R4 1146 aaKnown RBP12.56□□□□□ -0.4
SHROOM3-201ENST00000296043 CCNYL1Q8N7R7 359 aa12.56□□□□□ -0.4
SHROOM3-201ENST00000296043 DNAAF3Q8N9W5 541 aa12.56□□□□□ -0.4
SHROOM3-201ENST00000296043 GJA10Q969M2 543 aa12.56□□□□□ -0.4
SHROOM3-201ENST00000296043 OTULINQ96BN8 352 aa12.56□□□□□ -0.4
SHROOM3-201ENST00000296043 MED10Q9BTT4 135 aa12.56□□□□□ -0.4
SHROOM3-201ENST00000296043 VCPKMTQ9H867 229 aa12.56□□□□□ -0.4
SHROOM3-201ENST00000296043 PSMC6P62333 389 aa12.55□□□□□ -0.4
SHROOM3-201ENST00000296043 ANGPT1Q15389 498 aa12.55□□□□□ -0.4
SHROOM3-201ENST00000296043 NUP93Q8N1F7 819 aa12.55□□□□□ -0.4
SHROOM3-201ENST00000296043 MARCOQ9UEW3 520 aaPredicted RBP12.55□□□□□ -0.4
SHROOM3-201ENST00000296043 ADCY9O60503 1353 aa12.55□□□□□ -0.4
SHROOM3-201ENST00000296043 TARSP26639 723 aaKnown RBP12.55□□□□□ -0.4
SHROOM3-201ENST00000296043 PTGISQ16647 500 aa12.55□□□□□ -0.4
SHROOM3-201ENST00000296043 USH1GQ495M9 461 aa12.55□□□□□ -0.4
SHROOM3-201ENST00000296043 UBN1Q9NPG3 1134 aa12.55□□□□□ -0.4
SHROOM3-201ENST00000296043 A6NJR5 290 aa12.55□□□□□ -0.4
SHROOM3-201ENST00000296043 MFN2O95140 757 aa12.55□□□□□ -0.4
SHROOM3-201ENST00000296043 NOP9Q86U38 636 aaKnown RBP12.55□□□□□ -0.4
SHROOM3-201ENST00000296043 ZNF507Q8TCN5 953 aa12.55□□□□□ -0.4
SHROOM3-201ENST00000296043 GINS4Q9BRT9 223 aa12.55□□□□□ -0.4
SHROOM3-201ENST00000296043 LSG1Q9H089 658 aaKnown RBP12.55□□□□□ -0.4
SHROOM3-201ENST00000296043 GMEB1Q9Y692 573 aa12.55□□□□□ -0.4
SHROOM3-201ENST00000296043 LPXNO60711 386 aa12.55□□□□□ -0.4
SHROOM3-201ENST00000296043 VAMP4O75379 141 aa12.55□□□□□ -0.4
SHROOM3-201ENST00000296043 SMAD5Q99717 465 aaKnown RBP12.55□□□□□ -0.4
SHROOM3-201ENST00000296043 KDM5AP29375 1690 aaKnown RBP12.55□□□□□ -0.4
SHROOM3-201ENST00000296043 KDM3AQ9Y4C1 1321 aa12.55□□□□□ -0.4
SHROOM3-201ENST00000296043 ZBTB7BO15156 539 aaPredicted RBP12.55□□□□□ -0.4
SHROOM3-201ENST00000296043 PPHLN1Q8NEY8 458 aaKnown RBP12.55□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms