RNA–Protein interactions for RNA: ENST00000292538.8

CUX1-202, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 2,930 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-202ENST00000292538 PARVGQ9HBI0 331 aa12.65□□□□□ -0.39
CUX1-202ENST00000292538 SLC38A10Q9HBR0 1119 aa12.65□□□□□ -0.39
CUX1-202ENST00000292538 RNF146Q9NTX7 359 aa12.65□□□□□ -0.39
CUX1-202ENST00000292538 CGNQ9P2M7 1197 aaKnown RBP12.65□□□□□ -0.39
CUX1-202ENST00000292538 PPP1R9AQ9ULJ8 1098 aa12.65□□□□□ -0.39
CUX1-202ENST00000292538 MRFAP1Q9Y605 127 aa12.65□□□□□ -0.39
CUX1-202ENST00000292538 AKAP3O75969 853 aa12.64□□□□□ -0.39
CUX1-202ENST00000292538 PTPRAP18433 802 aa12.64□□□□□ -0.39
CUX1-202ENST00000292538 HOXD13P35453 343 aa12.64□□□□□ -0.39
CUX1-202ENST00000292538 BACE1P56817 501 aa12.64□□□□□ -0.39
CUX1-202ENST00000292538 KRT83P78385 493 aa12.64□□□□□ -0.39
CUX1-202ENST00000292538 MRPS9P82933 396 aaKnown RBP12.64□□□□□ -0.39
CUX1-202ENST00000292538 TKFCQ3LXA3 575 aa12.64□□□□□ -0.39
CUX1-202ENST00000292538 ZCWPW2Q504Y3 356 aa12.64□□□□□ -0.39
CUX1-202ENST00000292538 MTERF4Q7Z6M4 381 aaKnown RBP12.64□□□□□ -0.39
CUX1-202ENST00000292538 FBXO41Q8TF61 875 aa12.64□□□□□ -0.39
CUX1-202ENST00000292538 CNKSR2Q8WXI2 1034 aa12.64□□□□□ -0.39
CUX1-202ENST00000292538 NACC1Q96RE7 527 aa12.64□□□□□ -0.39
CUX1-202ENST00000292538 JADE2Q9NQC1 790 aa12.64□□□□□ -0.39
CUX1-202ENST00000292538 ARHGAP20Q9P2F6 1191 aa12.64□□□□□ -0.39
CUX1-202ENST00000292538 VWA5AO00534 786 aa12.64□□□□□ -0.39
CUX1-202ENST00000292538 NR3C1P04150 777 aa12.64□□□□□ -0.39
CUX1-202ENST00000292538 RHOXF2BP0C7M4 288 aa12.64□□□□□ -0.39
CUX1-202ENST00000292538 SLC9A1P19634 815 aa12.64□□□□□ -0.39
CUX1-202ENST00000292538 FAM133AQ8N9E0 248 aa12.64□□□□□ -0.39
CUX1-202ENST00000292538 RETREG2Q8NC44 543 aa12.64□□□□□ -0.39
CUX1-202ENST00000292538 NAPGQ99747 312 aaPredicted RBP12.64□□□□□ -0.39
CUX1-202ENST00000292538 RHOXF2Q9BQY4 288 aa12.64□□□□□ -0.39
CUX1-202ENST00000292538 IFIH1Q9BYX4 1025 aaKnown RBP12.64□□□□□ -0.39
CUX1-202ENST00000292538 SYNPO2Q9UMS6 1093 aa12.64□□□□□ -0.39
CUX1-202ENST00000292538 PITPNM2Q9BZ72 1349 aa12.63□□□□□ -0.39
CUX1-202ENST00000292538 FZD9O00144 591 aa12.63□□□□□ -0.39
CUX1-202ENST00000292538 CALUO43852 315 aaPredicted RBP12.63□□□□□ -0.39
CUX1-202ENST00000292538 XRCC5P13010 732 aaKnown RBP12.63□□□□□ -0.39
CUX1-202ENST00000292538 KIF5AQ12840 1032 aa12.63□□□□□ -0.39
CUX1-202ENST00000292538 ITGB3BPQ13352 177 aaPredicted RBP12.63□□□□□ -0.39
CUX1-202ENST00000292538 PTPROQ16827 1216 aa12.63□□□□□ -0.39
CUX1-202ENST00000292538 PLA2G4FQ68DD2 849 aa12.63□□□□□ -0.39
CUX1-202ENST00000292538 GPRC5CQ9NQ84 441 aa12.63□□□□□ -0.39
CUX1-202ENST00000292538 TISP43B9A030 160 aa12.63□□□□□ -0.39
CUX1-202ENST00000292538 BUB1O43683 1085 aa12.63□□□□□ -0.39
CUX1-202ENST00000292538 KRT86O43790 486 aa12.63□□□□□ -0.39
CUX1-202ENST00000292538 HIP1RO75146 1068 aa12.63□□□□□ -0.39
CUX1-202ENST00000292538 SEC31AO94979 1220 aaKnown RBP12.63□□□□□ -0.39
CUX1-202ENST00000292538 PNMA6AP0CW24 399 aaPredicted RBP12.63□□□□□ -0.39
CUX1-202ENST00000292538 KIF11P52732 1056 aa12.63□□□□□ -0.39
CUX1-202ENST00000292538 HIRAP54198 1017 aaPredicted RBP12.63□□□□□ -0.39
CUX1-202ENST00000292538 NPEPPSP55786 919 aa12.63□□□□□ -0.39
CUX1-202ENST00000292538 PPP2R5CQ13362 524 aa12.63□□□□□ -0.39
CUX1-202ENST00000292538 COBLL1Q53SF7 1204 aa12.63□□□□□ -0.39
CUX1-202ENST00000292538 GJB7Q6PEY0 223 aa12.63□□□□□ -0.39
CUX1-202ENST00000292538 PADI6Q6TGC4 694 aa12.63□□□□□ -0.39
CUX1-202ENST00000292538 DHX37Q8IY37 1157 aaKnown RBP12.63□□□□□ -0.39
CUX1-202ENST00000292538 SCYL3Q8IZE3 742 aa12.63□□□□□ -0.39
CUX1-202ENST00000292538 SPAG5Q96R06 1193 aa12.63□□□□□ -0.39
CUX1-202ENST00000292538 MLXIPQ9HAP2 919 aa12.63□□□□□ -0.39
CUX1-202ENST00000292538 CHMP4BP1P59074 171 aa12.62□□□□□ -0.39
CUX1-202ENST00000292538 SETQ01105 290 aaPredicted RBP12.62□□□□□ -0.39
CUX1-202ENST00000292538 C1orf186Q6ZWK4 172 aa12.62□□□□□ -0.39
CUX1-202ENST00000292538 TUFT1Q9NNX1 390 aa12.62□□□□□ -0.39
CUX1-202ENST00000292538 K7ENM7 598 aa12.62□□□□□ -0.39
CUX1-202ENST00000292538 ZNF263O14978 683 aa12.62□□□□□ -0.39
CUX1-202ENST00000292538 TADA3O75528 432 aa12.62□□□□□ -0.39
CUX1-202ENST00000292538 EPB41P11171 864 aaKnown RBP12.62□□□□□ -0.39
CUX1-202ENST00000292538 HSD17B4P51659 736 aa12.62□□□□□ -0.39
CUX1-202ENST00000292538 USP14P54578 494 aa12.62□□□□□ -0.39
CUX1-202ENST00000292538 SOX10P56693 466 aa12.62□□□□□ -0.39
CUX1-202ENST00000292538 TTLL12Q14166 644 aaPredicted RBP12.62□□□□□ -0.39
CUX1-202ENST00000292538 EPHA7Q15375 998 aa12.62□□□□□ -0.39
CUX1-202ENST00000292538 CCDC94Q9BW85 323 aaPredicted RBP12.62□□□□□ -0.39
CUX1-202ENST00000292538 TMOD4Q9NZQ9 345 aa12.62□□□□□ -0.39
CUX1-202ENST00000292538 CD2APQ9Y5K6 639 aa12.62□□□□□ -0.39
CUX1-202ENST00000292538 GREB1LQ9C091 1923 aaPredicted RBP12.62□□□□□ -0.39
CUX1-202ENST00000292538 ATP1A1P05023 1023 aaKnown RBP12.61□□□□□ -0.39
CUX1-202ENST00000292538 CXCR5P32302 372 aa12.61□□□□□ -0.39
CUX1-202ENST00000292538 MAP3K10Q02779 954 aa12.61□□□□□ -0.39
CUX1-202ENST00000292538 PGM5Q15124 567 aa12.61□□□□□ -0.39
CUX1-202ENST00000292538 FAM102BQ5T8I3 360 aa12.61□□□□□ -0.39
CUX1-202ENST00000292538 SFMBT2Q5VUG0 894 aa12.61□□□□□ -0.39
CUX1-202ENST00000292538 TRIM59Q8IWR1 403 aa12.61□□□□□ -0.39
CUX1-202ENST00000292538 CAGE1Q8TC20 777 aa12.61□□□□□ -0.39
CUX1-202ENST00000292538 CEP63Q96MT8 703 aa12.61□□□□□ -0.39
CUX1-202ENST00000292538 ADAMTS1Q9UHI8 967 aa12.61□□□□□ -0.39
CUX1-202ENST00000292538 PLAGL2Q9UPG8 496 aa12.61□□□□□ -0.39
CUX1-202ENST00000292538 TELO2Q9Y4R8 837 aa12.61□□□□□ -0.39
CUX1-202ENST00000292538 COL2A1P02458 1487 aaPredicted RBP12.61□□□□□ -0.39
CUX1-202ENST00000292538 MOCS3O95396 460 aa12.61□□□□□ -0.39
CUX1-202ENST00000292538 GNA14O95837 355 aa12.61□□□□□ -0.39
CUX1-202ENST00000292538 TRIM49P0CI25 452 aa12.61□□□□□ -0.39
CUX1-202ENST00000292538 TRIM49CP0CI26 452 aa12.61□□□□□ -0.39
CUX1-202ENST00000292538 UGCGQ16739 394 aa12.61□□□□□ -0.39
CUX1-202ENST00000292538 EEPD1Q7L9B9 569 aa12.61□□□□□ -0.39
CUX1-202ENST00000292538 KIFC3Q9BVG8 833 aa12.61□□□□□ -0.39
CUX1-202ENST00000292538 HAUS4Q9H6D7 363 aa12.61□□□□□ -0.39
CUX1-202ENST00000292538 AS3MTQ9HBK9 375 aa12.61□□□□□ -0.39
CUX1-202ENST00000292538 AGO4Q9HCK5 861 aaKnown RBP12.61□□□□□ -0.39
CUX1-202ENST00000292538 GPRC5DQ9NZD1 345 aa12.61□□□□□ -0.39
CUX1-202ENST00000292538 PCDHA13Q9Y5I0 950 aa12.61□□□□□ -0.39
CUX1-202ENST00000292538 FRMD3A2A2Y4 597 aa12.61□□□□□ -0.39
CUX1-202ENST00000292538 CCDC169A6NNP5 214 aa12.61□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms