RNA–Protein interactions for RNA: ENST00000238112.7

CPSF3-201, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF3, Length 2,345 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-201ENST00000238112 SHTN1A0MZ66 631 aa20.49■□□□□ 0.87
CPSF3-201ENST00000238112 FLOT1O75955 427 aa20.49■□□□□ 0.87
CPSF3-201ENST00000238112 SPATA31C1P0DKV0 1188 aa20.49■□□□□ 0.87
CPSF3-201ENST00000238112 RPL13P26373 211 aaKnown RBP20.49■□□□□ 0.87
CPSF3-201ENST00000238112 TCP10Q12799 353 aa20.49■□□□□ 0.87
CPSF3-201ENST00000238112 KLHL7Q8IXQ5 586 aa20.49■□□□□ 0.87
CPSF3-201ENST00000238112 MREGQ8N565 214 aa20.49■□□□□ 0.87
CPSF3-201ENST00000238112 BCAS4Q8TDM0 211 aa20.49■□□□□ 0.87
CPSF3-201ENST00000238112 WHAMMQ8TF30 809 aa20.49■□□□□ 0.87
CPSF3-201ENST00000238112 FAM107BQ9H098 131 aa20.49■□□□□ 0.87
CPSF3-201ENST00000238112 METTL14Q9HCE5 456 aaKnown RBP20.49■□□□□ 0.87
CPSF3-201ENST00000238112 ATAD5Q96QE3 1844 aa20.49■□□□□ 0.87
CPSF3-201ENST00000238112 TBCAO75347 108 aaKnown RBP20.49■□□□□ 0.87
CPSF3-201ENST00000238112 AKAP3O75969 853 aa20.49■□□□□ 0.87
CPSF3-201ENST00000238112 KRT14P02533 472 aa20.49■□□□□ 0.87
CPSF3-201ENST00000238112 CRKP46108 304 aa20.49■□□□□ 0.87
CPSF3-201ENST00000238112 CCT5P48643 541 aa20.49■□□□□ 0.87
CPSF3-201ENST00000238112 IKQ13123 557 aaPredicted RBP20.49■□□□□ 0.87
CPSF3-201ENST00000238112 USH1GQ495M9 461 aa20.49■□□□□ 0.87
CPSF3-201ENST00000238112 VPS36Q86VN1 386 aa20.49■□□□□ 0.87
CPSF3-201ENST00000238112 FAM20AQ96MK3 541 aa20.49■□□□□ 0.87
CPSF3-201ENST00000238112 TYW1Q9NV66 732 aaKnown RBP20.49■□□□□ 0.87
CPSF3-201ENST00000238112 NAGPAQ9UK23 515 aa20.49■□□□□ 0.87
CPSF3-201ENST00000238112 ANKRD65E5RJM6 399 aa20.48■□□□□ 0.87
CPSF3-201ENST00000238112 RAD51CO43502 376 aa20.48■□□□□ 0.87
CPSF3-201ENST00000238112 KIF4AO95239 1232 aa20.48■□□□□ 0.87
CPSF3-201ENST00000238112 FOSP01100 380 aaPredicted RBP20.48■□□□□ 0.87
CPSF3-201ENST00000238112 NR3C1P04150 777 aa20.48■□□□□ 0.87
CPSF3-201ENST00000238112 HOXD13P35453 343 aa20.48■□□□□ 0.87
CPSF3-201ENST00000238112 SNAP25P60880 206 aa20.48■□□□□ 0.87
CPSF3-201ENST00000238112 SKOR1P84550 965 aa20.48■□□□□ 0.87
CPSF3-201ENST00000238112 SHROOM1Q2M3G4 852 aaPredicted RBP20.48■□□□□ 0.87
CPSF3-201ENST00000238112 DPY19L2P1Q6NXN4 242 aa20.48■□□□□ 0.87
CPSF3-201ENST00000238112 ALKBH5Q6P6C2 394 aaKnown RBP20.48■□□□□ 0.87
CPSF3-201ENST00000238112 FBXO11Q86XK2 927 aa20.48■□□□□ 0.87
CPSF3-201ENST00000238112 IQCKQ8N0W5 287 aa20.48■□□□□ 0.87
CPSF3-201ENST00000238112 PBKQ96KB5 322 aa20.48■□□□□ 0.87
CPSF3-201ENST00000238112 P2RX7Q99572 595 aaKnown RBP20.48■□□□□ 0.87
CPSF3-201ENST00000238112 GRIN2DO15399 1336 aa20.48■□□□□ 0.87
CPSF3-201ENST00000238112 EBAG9O00559 213 aa20.48■□□□□ 0.87
CPSF3-201ENST00000238112 SLC16A3O15427 465 aaKnown RBP20.48■□□□□ 0.87
CPSF3-201ENST00000238112 GCNT3O95395 438 aa20.48■□□□□ 0.87
CPSF3-201ENST00000238112 CYP4A11Q02928 519 aa20.48■□□□□ 0.87
CPSF3-201ENST00000238112 ICA1Q05084 483 aa20.48■□□□□ 0.87
CPSF3-201ENST00000238112 LENG9Q96B70 501 aa20.48■□□□□ 0.87
CPSF3-201ENST00000238112 UBR3Q6ZT12 1888 aa20.48■□□□□ 0.87
CPSF3-201ENST00000238112 FAM86B1E9PN63 330 aa20.47■□□□□ 0.87
CPSF3-201ENST00000238112 FAM86B2P0C5J1 330 aa20.47■□□□□ 0.87
CPSF3-201ENST00000238112 ANXA13P27216 316 aa20.47■□□□□ 0.87
CPSF3-201ENST00000238112 SREBF1P36956 1147 aa20.47■□□□□ 0.87
CPSF3-201ENST00000238112 CACNB3P54284 484 aa20.47■□□□□ 0.87
CPSF3-201ENST00000238112 EPHA7Q15375 998 aa20.47■□□□□ 0.87
CPSF3-201ENST00000238112 KCTD16Q68DU8 428 aa20.47■□□□□ 0.87
CPSF3-201ENST00000238112 TTC19Q6DKK2 380 aaPredicted RBP20.47■□□□□ 0.87
CPSF3-201ENST00000238112 BHMT2Q9H2M3 363 aa20.47■□□□□ 0.87
CPSF3-201ENST00000238112 PI4KBQ9UBF8 816 aa20.47■□□□□ 0.87
CPSF3-201ENST00000238112 TMEM59LQ9UK28 342 aa20.47■□□□□ 0.87
CPSF3-201ENST00000238112 CEP104O60308 925 aa20.47■□□□□ 0.87
CPSF3-201ENST00000238112 PRKCIP41743 596 aa20.47■□□□□ 0.87
CPSF3-201ENST00000238112 BMT2Q1RMZ1 405 aa20.47■□□□□ 0.87
CPSF3-201ENST00000238112 EFCAB13Q8IY85 973 aa20.47■□□□□ 0.87
CPSF3-201ENST00000238112 SH2D3CQ8N5H7 860 aa20.47■□□□□ 0.87
CPSF3-201ENST00000238112 RBM46Q8TBY0 533 aaKnown RBP20.47■□□□□ 0.87
CPSF3-201ENST00000238112 PPM1EQ8WY54 764 aa20.47■□□□□ 0.87
CPSF3-201ENST00000238112 GCNT4Q9P109 453 aa20.47■□□□□ 0.87
CPSF3-201ENST00000238112 ZNF233A6NK53 670 aa20.46■□□□□ 0.87
CPSF3-201ENST00000238112 RSPH10B2B2RC85 870 aa20.46■□□□□ 0.87
CPSF3-201ENST00000238112 RSPH10BP0C881 870 aa20.46■□□□□ 0.87
CPSF3-201ENST00000238112 ZDHHC15Q96MV8 337 aa20.46■□□□□ 0.87
CPSF3-201ENST00000238112 TMX4Q9H1E5 349 aaPredicted RBP20.46■□□□□ 0.87
CPSF3-201ENST00000238112 RABEP2Q9H5N1 569 aa20.46■□□□□ 0.87
CPSF3-201ENST00000238112 FBXL5Q9UKA1 691 aa20.46■□□□□ 0.87
CPSF3-201ENST00000238112 RABGAP1Q9Y3P9 1069 aa20.46■□□□□ 0.87
CPSF3-201ENST00000238112 ASTN1O14525 1302 aa20.46■□□□□ 0.87
CPSF3-201ENST00000238112 ADAMTSL1Q8N6G6 1762 aa20.46■□□□□ 0.87
CPSF3-201ENST00000238112 DDTLA6NHG4 134 aaPredicted RBP20.45■□□□□ 0.87
CPSF3-201ENST00000238112 F5H6K3 240 aa20.45■□□□□ 0.87
CPSF3-201ENST00000238112 MSH4O15457 936 aa20.45■□□□□ 0.87
CPSF3-201ENST00000238112 ZNF76P36508 570 aa20.45■□□□□ 0.87
CPSF3-201ENST00000238112 KLRC3Q07444 240 aa20.45■□□□□ 0.87
CPSF3-201ENST00000238112 LRRC57Q8N9N7 239 aa20.45■□□□□ 0.87
CPSF3-201ENST00000238112 ACTRT1Q8TDG2 376 aa20.45■□□□□ 0.87
CPSF3-201ENST00000238112 LMBR1Q8WVP7 490 aa20.45■□□□□ 0.87
CPSF3-201ENST00000238112 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP20.45■□□□□ 0.87
CPSF3-201ENST00000238112 GOLPH3Q9H4A6 298 aa20.45■□□□□ 0.87
CPSF3-201ENST00000238112 TAF1DQ9H5J8 278 aaPredicted RBP20.45■□□□□ 0.87
CPSF3-201ENST00000238112 HLTFQ14527 1009 aaKnown RBP eCLIP20.45■□□□□ 0.86
CPSF3-201ENST00000238112 TMEM179Q6ZVK1 233 aa20.45■□□□□ 0.86
CPSF3-201ENST00000238112 CD302Q8IX05 232 aa20.45■□□□□ 0.86
CPSF3-201ENST00000238112 SLC35C1Q96A29 364 aa20.45■□□□□ 0.86
CPSF3-201ENST00000238112 GJD4Q96KN9 370 aaPredicted RBP20.45■□□□□ 0.86
CPSF3-201ENST00000238112 RUSC1Q9BVN2 902 aa20.45■□□□□ 0.86
CPSF3-201ENST00000238112 TMCO5BA8MYB1 307 aa20.44■□□□□ 0.86
CPSF3-201ENST00000238112 CLIC2O15247 247 aa20.44■□□□□ 0.86
CPSF3-201ENST00000238112 CASP4P49662 377 aa20.44■□□□□ 0.86
CPSF3-201ENST00000238112 ATP1A2P50993 1020 aa20.44■□□□□ 0.86
CPSF3-201ENST00000238112 RBM5P52756 815 aaKnown RBP eCLIP20.44■□□□□ 0.86
CPSF3-201ENST00000238112 PDCLQ13371 301 aa20.44■□□□□ 0.86
CPSF3-201ENST00000238112 TRADDQ15628 312 aa20.44■□□□□ 0.86
CPSF3-201ENST00000238112 SYDE2Q5VT97 1194 aa20.44■□□□□ 0.86
Retrieved 100 of 20,778 RNA–protein pairs in 119.2 ms