RNA–Protein interactions for RNA: ENST00000639659.1

SYNE2-228, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 1 (best) BASIC

Gene SYNE2, Length 1,290 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-228ENST00000639659 SENP7Q9BQF6 1050 aa17.25■□□□□ 0.35
SYNE2-228ENST00000639659 EHMT1Q9H9B1 1298 aa17.25■□□□□ 0.35
SYNE2-228ENST00000639659 ERAP1Q9NZ08 941 aa17.25■□□□□ 0.35
SYNE2-228ENST00000639659 MRPL42Q9Y6G3 142 aaKnown RBP17.25■□□□□ 0.35
SYNE2-228ENST00000639659 KIAA1671Q9BY89 1806 aa17.25■□□□□ 0.35
SYNE2-228ENST00000639659 PIEZO1Q92508 2521 aa17.24■□□□□ 0.35
SYNE2-228ENST00000639659 M0QZ92 97 aa17.24■□□□□ 0.35
SYNE2-228ENST00000639659 MEIS2O14770 477 aa17.24■□□□□ 0.35
SYNE2-228ENST00000639659 GSPT1P15170 499 aaKnown RBP17.24■□□□□ 0.35
SYNE2-228ENST00000639659 MRPS6P82932 125 aaKnown RBP17.24■□□□□ 0.35
SYNE2-228ENST00000639659 UBE2SQ16763 222 aa17.24■□□□□ 0.35
SYNE2-228ENST00000639659 CTC1Q2NKJ3 1217 aa17.24■□□□□ 0.35
SYNE2-228ENST00000639659 TTC22Q5TAA0 569 aa17.24■□□□□ 0.35
SYNE2-228ENST00000639659 XRRA1Q6P2D8 792 aa17.24■□□□□ 0.35
SYNE2-228ENST00000639659 RBM23Q86U06 439 aaKnown RBP17.24■□□□□ 0.35
SYNE2-228ENST00000639659 RAB11FIP4Q86YS3 637 aa17.24■□□□□ 0.35
SYNE2-228ENST00000639659 RNF135Q8IUD6 432 aa17.24■□□□□ 0.35
SYNE2-228ENST00000639659 ZNF654Q8IZM8 581 aa17.24■□□□□ 0.35
SYNE2-228ENST00000639659 CMTR1Q8N1G2 835 aaKnown RBP17.24■□□□□ 0.35
SYNE2-228ENST00000639659 PPP2R3CQ969Q6 453 aa17.24■□□□□ 0.35
SYNE2-228ENST00000639659 GPRASP2Q96D09 838 aa17.24■□□□□ 0.35
SYNE2-228ENST00000639659 RC3H2Q9HBD1 1191 aaKnown RBP17.24■□□□□ 0.35
SYNE2-228ENST00000639659 TRPC6Q9Y210 931 aa17.24■□□□□ 0.35
SYNE2-228ENST00000639659 GSTTP1A0A1W2PQM5 241 aa17.23■□□□□ 0.35
SYNE2-228ENST00000639659 hCG_1642624A0A1W2PR95 340 aa17.23■□□□□ 0.35
SYNE2-228ENST00000639659 PPFIA3O75145 1194 aa17.23■□□□□ 0.35
SYNE2-228ENST00000639659 PLEKHA8P1O95397 391 aa17.23■□□□□ 0.35
SYNE2-228ENST00000639659 KCNA2P16389 499 aa17.23■□□□□ 0.35
SYNE2-228ENST00000639659 RXRAP19793 462 aa17.23■□□□□ 0.35
SYNE2-228ENST00000639659 KIF5BP33176 963 aa17.23■□□□□ 0.35
SYNE2-228ENST00000639659 ANTXR2P58335 489 aa17.23■□□□□ 0.35
SYNE2-228ENST00000639659 MTMR1Q13613 665 aa17.23■□□□□ 0.35
SYNE2-228ENST00000639659 AAMPQ13685 434 aa17.23■□□□□ 0.35
SYNE2-228ENST00000639659 ADGRD2Q7Z7M1 963 aa17.23■□□□□ 0.35
SYNE2-228ENST00000639659 LINC01599Q8WXQ3 324 aa17.23■□□□□ 0.35
SYNE2-228ENST00000639659 CLP1Q92989 425 aaKnown RBP17.23■□□□□ 0.35
SYNE2-228ENST00000639659 CDHR1Q96JP9 859 aa17.23■□□□□ 0.35
SYNE2-228ENST00000639659 MFSD14AQ96MC6 490 aa17.23■□□□□ 0.35
SYNE2-228ENST00000639659 YTHDC1Q96MU7 727 aaKnown RBP17.23■□□□□ 0.35
SYNE2-228ENST00000639659 SPZ1Q9BXG8 430 aa17.23■□□□□ 0.35
SYNE2-228ENST00000639659 SMARCAD1Q9H4L7 1026 aa17.23■□□□□ 0.35
SYNE2-228ENST00000639659 AGO3Q9H9G7 860 aaKnown RBP17.23■□□□□ 0.35
SYNE2-228ENST00000639659 PLAGL2Q9UPG8 496 aa17.23■□□□□ 0.35
SYNE2-228ENST00000639659 TTC3P53804 2025 aa17.22■□□□□ 0.35
SYNE2-228ENST00000639659 SPDYE3A6NKU9 549 aa17.22■□□□□ 0.35
SYNE2-228ENST00000639659 DGKIO75912 1065 aa17.22■□□□□ 0.35
SYNE2-228ENST00000639659 ITGB5P18084 799 aa17.22■□□□□ 0.35
SYNE2-228ENST00000639659 NRIP1P48552 1158 aa17.22■□□□□ 0.35
SYNE2-228ENST00000639659 GATMP50440 423 aa17.22■□□□□ 0.35
SYNE2-228ENST00000639659 SPOUT1Q5T280 376 aaKnown RBP17.22■□□□□ 0.35
SYNE2-228ENST00000639659 CASC1Q6TDU7 716 aa17.22■□□□□ 0.35
SYNE2-228ENST00000639659 CCDC82Q8N4S0 544 aa17.22■□□□□ 0.35
SYNE2-228ENST00000639659 TRAPPC12Q8WVT3 735 aa17.22■□□□□ 0.35
SYNE2-228ENST00000639659 ZNF689Q96CS4 500 aaPredicted RBP17.22■□□□□ 0.35
SYNE2-228ENST00000639659 PLVAPQ9BX97 442 aa17.22■□□□□ 0.35
SYNE2-228ENST00000639659 PSTPIP2Q9H939 334 aa17.22■□□□□ 0.35
SYNE2-228ENST00000639659 LRFN2Q9ULH4 789 aa17.22■□□□□ 0.35
SYNE2-228ENST00000639659 PCDHGC5Q9Y5F6 944 aa17.22■□□□□ 0.35
SYNE2-228ENST00000639659 TRPV2Q9Y5S1 764 aa17.22■□□□□ 0.35
SYNE2-228ENST00000639659 WDFY4Q6ZS81 3184 aa17.22■□□□□ 0.35
SYNE2-228ENST00000639659 LOXHD1Q8IVV2 1947 aa17.21■□□□□ 0.35
SYNE2-228ENST00000639659 PIK3CDO00329 1044 aa17.21■□□□□ 0.35
SYNE2-228ENST00000639659 DDAH1O94760 285 aa17.21■□□□□ 0.35
SYNE2-228ENST00000639659 ITGB1P05556 798 aa17.21■□□□□ 0.35
SYNE2-228ENST00000639659 INSRRP14616 1297 aa17.21■□□□□ 0.35
SYNE2-228ENST00000639659 DNAJB1P25685 340 aa17.21■□□□□ 0.35
SYNE2-228ENST00000639659 PAK2Q13177 524 aa17.21■□□□□ 0.35
SYNE2-228ENST00000639659 MARCH8Q5T0T0 291 aa17.21■□□□□ 0.35
SYNE2-228ENST00000639659 IER5Q5VY09 327 aa17.21■□□□□ 0.35
SYNE2-228ENST00000639659 NPAS4Q8IUM7 802 aa17.21■□□□□ 0.35
SYNE2-228ENST00000639659 MB21D2Q8IYB1 491 aaPredicted RBP17.21■□□□□ 0.35
SYNE2-228ENST00000639659 CMTR2Q8IYT2 770 aaKnown RBP17.21■□□□□ 0.35
SYNE2-228ENST00000639659 KLHL23Q8NBE8 558 aa17.21■□□□□ 0.35
SYNE2-228ENST00000639659 IGDCC4Q8TDY8 1250 aa17.21■□□□□ 0.35
SYNE2-228ENST00000639659 POF1BQ8WVV4 589 aa17.21■□□□□ 0.35
SYNE2-228ENST00000639659 AZI2Q9H6S1 392 aa17.21■□□□□ 0.35
SYNE2-228ENST00000639659 BARX2Q9UMQ3 279 aaPredicted RBP17.21■□□□□ 0.35
SYNE2-228ENST00000639659 GINS2Q9Y248 185 aa17.21■□□□□ 0.35
SYNE2-228ENST00000639659 MBLAC1A4D2B0 266 aaPredicted RBP17.2■□□□□ 0.34
SYNE2-228ENST00000639659 CCDC69A6NI79 296 aa17.2■□□□□ 0.34
SYNE2-228ENST00000639659 STAG3L1P0CL83 205 aa17.2■□□□□ 0.34
SYNE2-228ENST00000639659 SCG2P13521 617 aa17.2■□□□□ 0.34
SYNE2-228ENST00000639659 CHMLP26374 656 aa17.2■□□□□ 0.34
SYNE2-228ENST00000639659 PDE4AP27815 886 aa17.2■□□□□ 0.34
SYNE2-228ENST00000639659 ADAM15Q13444 863 aa17.2■□□□□ 0.34
SYNE2-228ENST00000639659 CAMK1Q14012 370 aa17.2■□□□□ 0.34
SYNE2-228ENST00000639659 TMEM266Q2M3C6 531 aa17.2■□□□□ 0.34
SYNE2-228ENST00000639659 HERC4Q5GLZ8 1057 aaPredicted RBP17.2■□□□□ 0.34
SYNE2-228ENST00000639659 MICAL1Q8TDZ2 1067 aa17.2■□□□□ 0.34
SYNE2-228ENST00000639659 LY9Q9HBG7 655 aa17.2■□□□□ 0.34
SYNE2-228ENST00000639659 JPH1Q9HDC5 661 aaPredicted RBP17.2■□□□□ 0.34
SYNE2-228ENST00000639659 PRC1O43663 620 aa17.19■□□□□ 0.34
SYNE2-228ENST00000639659 NFX1Q12986 1120 aaKnown RBP17.19■□□□□ 0.34
SYNE2-228ENST00000639659 HEATR3Q7Z4Q2 680 aa17.19■□□□□ 0.34
SYNE2-228ENST00000639659 RTN4RL1Q86UN2 441 aaPredicted RBP17.19■□□□□ 0.34
SYNE2-228ENST00000639659 SRBD1Q8N5C6 995 aaKnown RBP17.19■□□□□ 0.34
SYNE2-228ENST00000639659 SPPL3Q8TCT6 385 aa17.19■□□□□ 0.34
SYNE2-228ENST00000639659 P2RX5Q93086 422 aa17.19■□□□□ 0.34
SYNE2-228ENST00000639659 LZTS2Q9BRK4 669 aa17.19■□□□□ 0.34
SYNE2-228ENST00000639659 FTHL17Q9BXU8 183 aa17.19■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms