RNA–Protein interactions for RNA: ENST00000637968.1

SCN1A-216, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 4,614 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-216ENST00000637968 ZNF304Q9HCX3 659 aa6.19□□□□□ -1.42
SCN1A-216ENST00000637968 PTTG2Q9NZH5 202 aa6.19□□□□□ -1.42
SCN1A-216ENST00000637968 HACD3Q9P035 362 aa6.19□□□□□ -1.42
SCN1A-216ENST00000637968 MOSPD1Q9UJG1 213 aa6.19□□□□□ -1.42
SCN1A-216ENST00000637968 TRAF3IP3Q9Y228 551 aa6.19□□□□□ -1.42
SCN1A-216ENST00000637968 TACC3Q9Y6A5 838 aa6.19□□□□□ -1.42
SCN1A-216ENST00000637968 SFI1A8K8P3 1242 aa6.19□□□□□ -1.42
SCN1A-216ENST00000637968 CNOT3O75175 753 aaKnown RBP6.19□□□□□ -1.42
SCN1A-216ENST00000637968 DDX5P17844 614 aaKnown RBP6.19□□□□□ -1.42
SCN1A-216ENST00000637968 DRD4P21917 467 aa6.19□□□□□ -1.42
SCN1A-216ENST00000637968 CMA1P23946 247 aa6.19□□□□□ -1.42
SCN1A-216ENST00000637968 PRKAR2BP31323 418 aa6.19□□□□□ -1.42
SCN1A-216ENST00000637968 CUL1Q13616 776 aa6.19□□□□□ -1.42
SCN1A-216ENST00000637968 CCDC62Q6P9F0 684 aa6.19□□□□□ -1.42
SCN1A-216ENST00000637968 C1orf131Q8NDD1 294 aaKnown RBP6.19□□□□□ -1.42
SCN1A-216ENST00000637968 GIPC3Q8TF64 312 aa6.19□□□□□ -1.42
SCN1A-216ENST00000637968 CDHR1Q96JP9 859 aa6.19□□□□□ -1.42
SCN1A-216ENST00000637968 RIOK1Q9BRS2 568 aaKnown RBP6.19□□□□□ -1.42
SCN1A-216ENST00000637968 RSPH9Q9H1X1 276 aaPredicted RBP6.19□□□□□ -1.42
SCN1A-216ENST00000637968 SLC12A4Q9UP95 1085 aa6.19□□□□□ -1.42
SCN1A-216ENST00000637968 EFR3BQ9Y2G0 817 aa6.19□□□□□ -1.42
SCN1A-216ENST00000637968 ABCC4O15439 1325 aa6.19□□□□□ -1.42
SCN1A-216ENST00000637968 ABCC10Q5T3U5 1492 aa6.19□□□□□ -1.42
SCN1A-216ENST00000637968 UGGT2Q9NYU1 1516 aa6.19□□□□□ -1.42
SCN1A-216ENST00000637968 C5orf60A6NFR6 353 aa6.19□□□□□ -1.42
SCN1A-216ENST00000637968 STAMBPO95630 424 aa6.19□□□□□ -1.42
SCN1A-216ENST00000637968 TFRCP02786 760 aaKnown RBP6.19□□□□□ -1.42
SCN1A-216ENST00000637968 RPS6KB1P23443 525 aa6.19□□□□□ -1.42
SCN1A-216ENST00000637968 USP11P51784 963 aa6.19□□□□□ -1.42
SCN1A-216ENST00000637968 STX17P56962 302 aa6.19□□□□□ -1.42
SCN1A-216ENST00000637968 PASD1Q8IV76 773 aa6.19□□□□□ -1.42
SCN1A-216ENST00000637968 SLC15A3Q8IY34 581 aa6.19□□□□□ -1.42
SCN1A-216ENST00000637968 LRRC34Q8IZ02 419 aa6.19□□□□□ -1.42
SCN1A-216ENST00000637968 KAT6BQ8WYB5 2073 aa6.19□□□□□ -1.42
SCN1A-216ENST00000637968 NSMCE3Q96MG7 304 aa6.19□□□□□ -1.42
SCN1A-216ENST00000637968 PARVGQ9HBI0 331 aa6.19□□□□□ -1.42
SCN1A-216ENST00000637968 PLGRKTQ9HBL7 147 aa6.19□□□□□ -1.42
SCN1A-216ENST00000637968 QPCTLQ9NXS2 382 aa6.19□□□□□ -1.42
SCN1A-216ENST00000637968 ATPIF1Q9UII2 106 aa6.19□□□□□ -1.42
SCN1A-216ENST00000637968 ATP11BQ9Y2G3 1177 aa6.19□□□□□ -1.42
SCN1A-216ENST00000637968 TDRKHQ9Y2W6 561 aaKnown RBP6.19□□□□□ -1.42
SCN1A-216ENST00000637968 ADGRL3Q9HAR2 1447 aa6.18□□□□□ -1.42
SCN1A-216ENST00000637968 PTPDC1A2A3K4 754 aa6.18□□□□□ -1.42
SCN1A-216ENST00000637968 H0YC42 278 aa6.18□□□□□ -1.42
SCN1A-216ENST00000637968 O00370 1275 aa6.18□□□□□ -1.42
SCN1A-216ENST00000637968 SLC27A2O14975 620 aa6.18□□□□□ -1.42
SCN1A-216ENST00000637968 MAPK13O15264 365 aa6.18□□□□□ -1.42
SCN1A-216ENST00000637968 DCTN3O75935 186 aa6.18□□□□□ -1.42
SCN1A-216ENST00000637968 CHN1P15882 459 aa6.18□□□□□ -1.42
SCN1A-216ENST00000637968 TPD52P55327 224 aaPredicted RBP6.18□□□□□ -1.42
SCN1A-216ENST00000637968 GSTM4Q03013 218 aa6.18□□□□□ -1.42
SCN1A-216ENST00000637968 SH3D19Q5HYK7 790 aa6.18□□□□□ -1.42
SCN1A-216ENST00000637968 WDR45BQ5MNZ6 344 aa6.18□□□□□ -1.42
SCN1A-216ENST00000637968 PAPD7Q5XG87 772 aaKnown RBP6.18□□□□□ -1.42
SCN1A-216ENST00000637968 ZNF449Q6P9G9 518 aa6.18□□□□□ -1.42
SCN1A-216ENST00000637968 C1orf228Q6PIY5 440 aa6.18□□□□□ -1.42
SCN1A-216ENST00000637968 PTF1AQ7RTS3 328 aa6.18□□□□□ -1.42
SCN1A-216ENST00000637968 SCYL3Q8IZE3 742 aa6.18□□□□□ -1.42
SCN1A-216ENST00000637968 CFAP61Q8NHU2 1237 aa6.18□□□□□ -1.42
SCN1A-216ENST00000637968 SNX29Q8TEQ0 813 aa6.18□□□□□ -1.42
SCN1A-216ENST00000637968 KRT12Q99456 494 aa6.18□□□□□ -1.42
SCN1A-216ENST00000637968 CGREF1Q99674 301 aa6.18□□□□□ -1.42
SCN1A-216ENST00000637968 TUBB6Q9BUF5 446 aa6.18□□□□□ -1.42
SCN1A-216ENST00000637968 PIH1D3Q9NQM4 214 aaKnown RBP6.18□□□□□ -1.42
SCN1A-216ENST00000637968 AFF2P51816 1311 aa6.18□□□□□ -1.42
SCN1A-216ENST00000637968 GNA14O95837 355 aa6.18□□□□□ -1.42
SCN1A-216ENST00000637968 UBTFL1P0CB47 393 aaPredicted RBP6.18□□□□□ -1.42
SCN1A-216ENST00000637968 PRKACBP22694 351 aa6.18□□□□□ -1.42
SCN1A-216ENST00000637968 MARK3P27448 753 aa6.18□□□□□ -1.42
SCN1A-216ENST00000637968 LRP8Q14114 963 aa6.18□□□□□ -1.42
SCN1A-216ENST00000637968 CCDC125Q86Z20 511 aa6.18□□□□□ -1.42
SCN1A-216ENST00000637968 DGCR14Q96DF8 476 aaKnown RBP6.18□□□□□ -1.42
SCN1A-216ENST00000637968 DMGDHQ9UI17 866 aaKnown RBP6.18□□□□□ -1.42
SCN1A-216ENST00000637968 TTLL3Q9Y4R7 772 aa6.18□□□□□ -1.42
SCN1A-216ENST00000637968 A0A1W2PRG0 241 aa6.18□□□□□ -1.42
SCN1A-216ENST00000637968 A6NJR5 290 aa6.18□□□□□ -1.42
SCN1A-216ENST00000637968 SPDYE16A6NNV3 312 aaPredicted RBP6.18□□□□□ -1.42
SCN1A-216ENST00000637968 TBKBP1A7MCY6 615 aa6.18□□□□□ -1.42
SCN1A-216ENST00000637968 TTC34A8MYJ7 566 aa6.18□□□□□ -1.42
SCN1A-216ENST00000637968 FANCGO15287 622 aa6.18□□□□□ -1.42
SCN1A-216ENST00000637968 VAMP4O75379 141 aa6.18□□□□□ -1.42
SCN1A-216ENST00000637968 DDX58O95786 925 aaKnown RBP6.18□□□□□ -1.42
SCN1A-216ENST00000637968 KRT5P13647 590 aa6.18□□□□□ -1.42
SCN1A-216ENST00000637968 HMOX2P30519 316 aa6.18□□□□□ -1.42
SCN1A-216ENST00000637968 SARSP49591 514 aaKnown RBP6.18□□□□□ -1.42
SCN1A-216ENST00000637968 CDK7P50613 346 aa6.18□□□□□ -1.42
SCN1A-216ENST00000637968 PLCB3Q01970 1234 aa6.18□□□□□ -1.42
SCN1A-216ENST00000637968 DSG1Q02413 1049 aa6.18□□□□□ -1.42
SCN1A-216ENST00000637968 RASSF7Q02833 373 aa6.18□□□□□ -1.42
SCN1A-216ENST00000637968 RNASELQ05823 741 aaKnown RBP6.18□□□□□ -1.42
SCN1A-216ENST00000637968 MKRN4PQ13434 485 aaPredicted RBP6.18□□□□□ -1.42
SCN1A-216ENST00000637968 TJAP1Q5JTD0 557 aa6.18□□□□□ -1.42
SCN1A-216ENST00000637968 FYB2Q5VWT5 728 aa6.18□□□□□ -1.42
SCN1A-216ENST00000637968 TMTC3Q6ZXV5 915 aa6.18□□□□□ -1.42
SCN1A-216ENST00000637968 DHX32Q7L7V1 743 aaKnown RBP6.18□□□□□ -1.42
SCN1A-216ENST00000637968 CABP7Q86V35 215 aa6.18□□□□□ -1.42
SCN1A-216ENST00000637968 PPP1R14CQ8TAE6 165 aa6.18□□□□□ -1.42
SCN1A-216ENST00000637968 ITPKCQ96DU7 683 aa6.18□□□□□ -1.42
SCN1A-216ENST00000637968 COX4I2Q96KJ9 171 aa6.18□□□□□ -1.42
SCN1A-216ENST00000637968 NOX5Q96PH1 765 aa6.18□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 20.3 ms