RNA–Protein interactions for RNA: ENST00000637699.1

CLN3-262, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,228 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-262ENST00000637699 IRS1P35568 1242 aa22.29■■□□□ 1.16
CLN3-262ENST00000637699 MARCH8Q5T0T0 291 aa22.29■■□□□ 1.16
CLN3-262ENST00000637699 CMTR1Q8N1G2 835 aaKnown RBP22.29■■□□□ 1.16
CLN3-262ENST00000637699 CLP1Q92989 425 aaKnown RBP22.29■■□□□ 1.16
CLN3-262ENST00000637699 CDHR1Q96JP9 859 aa22.29■■□□□ 1.16
CLN3-262ENST00000637699 MAP3K14Q99558 947 aa22.29■■□□□ 1.16
CLN3-262ENST00000637699 PSTPIP2Q9H939 334 aa22.29■■□□□ 1.16
CLN3-262ENST00000637699 ALG13Q9NP73 1137 aaKnown RBP22.29■■□□□ 1.16
CLN3-262ENST00000637699 ATG2AQ2TAZ0 1938 aa22.29■■□□□ 1.16
CLN3-262ENST00000637699 TRIOO75962 3097 aa22.28■■□□□ 1.16
CLN3-262ENST00000637699 DDAH1O94760 285 aa22.28■■□□□ 1.16
CLN3-262ENST00000637699 PLEKHA8P1O95397 391 aa22.28■■□□□ 1.16
CLN3-262ENST00000637699 TSHZ1Q6ZSZ6 1077 aa22.28■■□□□ 1.16
CLN3-262ENST00000637699 SRBD1Q8N5C6 995 aaKnown RBP22.28■■□□□ 1.16
CLN3-262ENST00000637699 ZNF689Q96CS4 500 aaPredicted RBP22.28■■□□□ 1.16
CLN3-262ENST00000637699 UPF3BQ9BZI7 483 aaKnown RBP22.28■■□□□ 1.16
CLN3-262ENST00000637699 FAM49AQ9H0Q0 323 aaPredicted RBP22.28■■□□□ 1.16
CLN3-262ENST00000637699 SMARCAD1Q9H4L7 1026 aa22.28■■□□□ 1.16
CLN3-262ENST00000637699 AGO3Q9H9G7 860 aaKnown RBP22.28■■□□□ 1.16
CLN3-262ENST00000637699 WDFY4Q6ZS81 3184 aa22.27■■□□□ 1.16
CLN3-262ENST00000637699 MBLAC1A4D2B0 266 aaPredicted RBP22.27■■□□□ 1.16
CLN3-262ENST00000637699 LINC01565O15544 149 aa22.27■■□□□ 1.16
CLN3-262ENST00000637699 MBTPS2O43462 519 aa22.27■■□□□ 1.16
CLN3-262ENST00000637699 DGKIO75912 1065 aa22.27■■□□□ 1.16
CLN3-262ENST00000637699 SMARCA1P28370 1054 aa22.27■■□□□ 1.16
CLN3-262ENST00000637699 CD52P31358 61 aa22.27■■□□□ 1.16
CLN3-262ENST00000637699 TTC3P53804 2025 aa22.27■■□□□ 1.16
CLN3-262ENST00000637699 MRPS6P82932 125 aaKnown RBP22.27■■□□□ 1.16
CLN3-262ENST00000637699 MTMR1Q13613 665 aa22.27■■□□□ 1.16
CLN3-262ENST00000637699 SMAD2Q15796 467 aaKnown RBP22.27■■□□□ 1.16
CLN3-262ENST00000637699 UBE2SQ16763 222 aa22.27■■□□□ 1.16
CLN3-262ENST00000637699 NFXL1Q6ZNB6 911 aa22.27■■□□□ 1.16
CLN3-262ENST00000637699 LZTS2Q9BRK4 669 aa22.27■■□□□ 1.16
CLN3-262ENST00000637699 PLAGL2Q9UPG8 496 aa22.27■■□□□ 1.16
CLN3-262ENST00000637699 hCG_1642624A0A1W2PR95 340 aa22.26■■□□□ 1.15
CLN3-262ENST00000637699 SGSM2O43147 1006 aa22.26■■□□□ 1.15
CLN3-262ENST00000637699 TBX10O75333 385 aa22.26■■□□□ 1.15
CLN3-262ENST00000637699 MMP1P03956 469 aa22.26■■□□□ 1.15
CLN3-262ENST00000637699 RXRAP19793 462 aa22.26■■□□□ 1.15
CLN3-262ENST00000637699 GNAQP50148 359 aa22.26■■□□□ 1.15
CLN3-262ENST00000637699 CASC1Q6TDU7 716 aa22.26■■□□□ 1.15
CLN3-262ENST00000637699 LINC01599Q8WXQ3 324 aa22.26■■□□□ 1.15
CLN3-262ENST00000637699 MAP4K1Q92918 833 aa22.26■■□□□ 1.15
CLN3-262ENST00000637699 PLVAPQ9BX97 442 aa22.26■■□□□ 1.15
CLN3-262ENST00000637699 UBIAD1Q9Y5Z9 338 aa22.26■■□□□ 1.15
CLN3-262ENST00000637699 PRC1O43663 620 aa22.25■■□□□ 1.15
CLN3-262ENST00000637699 INSRRP14616 1297 aa22.25■■□□□ 1.15
CLN3-262ENST00000637699 TMEM62Q0P6H9 643 aa22.25■■□□□ 1.15
CLN3-262ENST00000637699 CAMK1Q14012 370 aa22.25■■□□□ 1.15
CLN3-262ENST00000637699 RTN4RL1Q86UN2 441 aaPredicted RBP22.25■■□□□ 1.15
CLN3-262ENST00000637699 POP1Q99575 1024 aaKnown RBP22.25■■□□□ 1.15
CLN3-262ENST00000637699 MUTYHQ9UIF7 546 aa22.25■■□□□ 1.15
CLN3-262ENST00000637699 RBM8AQ9Y5S9 174 aaKnown RBP22.25■■□□□ 1.15
CLN3-262ENST00000637699 MRPL42Q9Y6G3 142 aaKnown RBP22.25■■□□□ 1.15
CLN3-262ENST00000637699 CCDC69A6NI79 296 aa22.24■■□□□ 1.15
CLN3-262ENST00000637699 RRN3P2A6NIE6 340 aa22.24■■□□□ 1.15
CLN3-262ENST00000637699 SPDYE3A6NKU9 549 aa22.24■■□□□ 1.15
CLN3-262ENST00000637699 ADAM15Q13444 863 aa22.24■■□□□ 1.15
CLN3-262ENST00000637699 SMAD4Q13485 552 aaKnown RBP22.24■■□□□ 1.15
CLN3-262ENST00000637699 PAN2Q504Q3 1202 aaKnown RBP22.24■■□□□ 1.15
CLN3-262ENST00000637699 IER5Q5VY09 327 aa22.24■■□□□ 1.15
CLN3-262ENST00000637699 HFE2Q6ZVN8 426 aa22.24■■□□□ 1.15
CLN3-262ENST00000637699 RAB11FIP4Q86YS3 637 aa22.24■■□□□ 1.15
CLN3-262ENST00000637699 CCDC82Q8N4S0 544 aa22.24■■□□□ 1.15
CLN3-262ENST00000637699 FBXL18Q96ME1 805 aa22.24■■□□□ 1.15
CLN3-262ENST00000637699 PCYT2Q99447 389 aa22.24■■□□□ 1.15
CLN3-262ENST00000637699 JADE2Q9NQC1 790 aa22.24■■□□□ 1.15
CLN3-262ENST00000637699 CD207Q9UJ71 328 aa22.24■■□□□ 1.15
CLN3-262ENST00000637699 PCDHA6Q9UN73 950 aa22.24■■□□□ 1.15
CLN3-262ENST00000637699 PCDHA8Q9Y5H6 950 aa22.24■■□□□ 1.15
CLN3-262ENST00000637699 DNAJB1P25685 340 aa22.23■■□□□ 1.15
CLN3-262ENST00000637699 NDUFV1P49821 464 aa22.23■■□□□ 1.15
CLN3-262ENST00000637699 RNF135Q8IUD6 432 aa22.23■■□□□ 1.15
CLN3-262ENST00000637699 CMTR2Q8IYT2 770 aaKnown RBP22.23■■□□□ 1.15
CLN3-262ENST00000637699 P2RX5Q93086 422 aa22.23■■□□□ 1.15
CLN3-262ENST00000637699 TRPC6Q9Y210 931 aa22.23■■□□□ 1.15
CLN3-262ENST00000637699 M0QZ92 97 aa22.22■■□□□ 1.15
CLN3-262ENST00000637699 STXBP3O00186 592 aa22.22■■□□□ 1.15
CLN3-262ENST00000637699 SH2B2O14492 632 aaPredicted RBP22.22■■□□□ 1.15
CLN3-262ENST00000637699 MAFGO15525 162 aa22.22■■□□□ 1.15
CLN3-262ENST00000637699 ITGB1P05556 798 aa22.22■■□□□ 1.15
CLN3-262ENST00000637699 IBSPP21815 317 aaPredicted RBP22.22■■□□□ 1.15
CLN3-262ENST00000637699 MRE11P49959 708 aa22.22■■□□□ 1.15
CLN3-262ENST00000637699 NHLH1Q02575 133 aa22.22■■□□□ 1.15
CLN3-262ENST00000637699 NPAS4Q8IUM7 802 aa22.22■■□□□ 1.15
CLN3-262ENST00000637699 TMTC2Q8N394 836 aa22.22■■□□□ 1.15
CLN3-262ENST00000637699 SPPL3Q8TCT6 385 aa22.22■■□□□ 1.15
CLN3-262ENST00000637699 TRAPPC12Q8WVT3 735 aa22.22■■□□□ 1.15
CLN3-262ENST00000637699 FTHL17Q9BXU8 183 aa22.22■■□□□ 1.15
CLN3-262ENST00000637699 AZI2Q9H6S1 392 aa22.22■■□□□ 1.15
CLN3-262ENST00000637699 JPH1Q9HDC5 661 aaPredicted RBP22.22■■□□□ 1.15
CLN3-262ENST00000637699 PADI3Q9ULW8 664 aa22.22■■□□□ 1.15
CLN3-262ENST00000637699 TRPV2Q9Y5S1 764 aa22.22■■□□□ 1.15
CLN3-262ENST00000637699 RPLP2P05387 115 aaKnown RBP22.21■■□□□ 1.15
CLN3-262ENST00000637699 MCM5P33992 734 aa22.21■■□□□ 1.15
CLN3-262ENST00000637699 COL9A3Q14050 684 aaPredicted RBP22.21■■□□□ 1.15
CLN3-262ENST00000637699 HEATR3Q7Z4Q2 680 aa22.21■■□□□ 1.15
CLN3-262ENST00000637699 ADGRD2Q7Z7M1 963 aa22.21■■□□□ 1.15
CLN3-262ENST00000637699 CRIPAKQ8N1N5 446 aa22.21■■□□□ 1.15
CLN3-262ENST00000637699 KLHL23Q8NBE8 558 aa22.21■■□□□ 1.15
Retrieved 100 of 20,778 RNA–protein pairs in 33.8 ms