RNA–Protein interactions for RNA: ENST00000635861.1

CLN3-241, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,404 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-241ENST00000635861 FUT2Q10981 343 aa21.05■□□□□ 0.96
CLN3-241ENST00000635861 MRPL38Q96DV4 380 aaKnown RBP21.05■□□□□ 0.96
CLN3-241ENST00000635861 SDF4Q9BRK5 362 aa21.05■□□□□ 0.96
CLN3-241ENST00000635861 BARHL2Q9NY43 387 aa21.05■□□□□ 0.96
CLN3-241ENST00000635861 SQORQ9Y6N5 450 aa21.05■□□□□ 0.96
CLN3-241ENST00000635861 EVPLQ92817 2033 aa21.05■□□□□ 0.96
CLN3-241ENST00000635861 ADCY7P51828 1080 aa21.04■□□□□ 0.96
CLN3-241ENST00000635861 EPC2Q52LR7 807 aa21.04■□□□□ 0.96
CLN3-241ENST00000635861 CEP55Q53EZ4 464 aa21.04■□□□□ 0.96
CLN3-241ENST00000635861 PLPPR4Q7Z2D5 763 aa21.04■□□□□ 0.96
CLN3-241ENST00000635861 RWDD3Q9Y3V2 267 aa21.04■□□□□ 0.96
CLN3-241ENST00000635861 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP21.04■□□□□ 0.96
CLN3-241ENST00000635861 H3BNC9 293 aa21.04■□□□□ 0.96
CLN3-241ENST00000635861 SLC26A2P50443 739 aa21.04■□□□□ 0.96
CLN3-241ENST00000635861 TIGD5Q53EQ6 642 aa21.04■□□□□ 0.96
CLN3-241ENST00000635861 MCTP2Q6DN12 878 aa21.04■□□□□ 0.96
CLN3-241ENST00000635861 RUFY4Q6ZNE9 571 aa21.04■□□□□ 0.96
CLN3-241ENST00000635861 NIPA1Q7RTP0 329 aa21.04■□□□□ 0.96
CLN3-241ENST00000635861 ANO3Q9BYT9 981 aa21.04■□□□□ 0.96
CLN3-241ENST00000635861 OSBPL7Q9BZF2 842 aa21.04■□□□□ 0.96
CLN3-241ENST00000635861 BRPF3Q9ULD4 1205 aa21.04■□□□□ 0.96
CLN3-241ENST00000635861 CCDC196A0A1B0GTZ2 297 aa21.03■□□□□ 0.96
CLN3-241ENST00000635861 GOLGA8AA7E2F4 631 aa21.03■□□□□ 0.96
CLN3-241ENST00000635861 GOLGA8BA8MQT2 603 aa21.03■□□□□ 0.96
CLN3-241ENST00000635861 STXBP3O00186 592 aa21.03■□□□□ 0.96
CLN3-241ENST00000635861 UPP2O95045 317 aa21.03■□□□□ 0.96
CLN3-241ENST00000635861 MARK3P27448 753 aa21.03■□□□□ 0.96
CLN3-241ENST00000635861 SREBF1P36956 1147 aa21.03■□□□□ 0.96
CLN3-241ENST00000635861 CLK2P49760 499 aaKnown RBP21.03■□□□□ 0.96
CLN3-241ENST00000635861 LPIN1Q14693 890 aa21.03■□□□□ 0.96
CLN3-241ENST00000635861 MARCH8Q5T0T0 291 aa21.03■□□□□ 0.96
CLN3-241ENST00000635861 IER5Q5VY09 327 aa21.03■□□□□ 0.96
CLN3-241ENST00000635861 TYW1BQ6NUM6 668 aa21.03■□□□□ 0.96
CLN3-241ENST00000635861 TSHZ1Q6ZSZ6 1077 aa21.03■□□□□ 0.96
CLN3-241ENST00000635861 TMEM192Q8IY95 271 aa21.03■□□□□ 0.96
CLN3-241ENST00000635861 IL17RAQ96F46 866 aa21.03■□□□□ 0.96
CLN3-241ENST00000635861 C1QTNF1Q9BXJ1 281 aa21.03■□□□□ 0.96
CLN3-241ENST00000635861 UBE2ZQ9H832 354 aaPredicted RBP21.03■□□□□ 0.96
CLN3-241ENST00000635861 PKD2L1Q9P0L9 805 aa21.03■□□□□ 0.96
CLN3-241ENST00000635861 V9GY48 417 aaPredicted RBP21.03■□□□□ 0.96
CLN3-241ENST00000635861 KLF18A0A0U1RQI7 1052 aa21.02■□□□□ 0.96
CLN3-241ENST00000635861 SMCO2A6NFE2 343 aa21.02■□□□□ 0.96
CLN3-241ENST00000635861 MEIS1O00470 390 aa21.02■□□□□ 0.96
CLN3-241ENST00000635861 GHRP10912 638 aa21.02■□□□□ 0.96
CLN3-241ENST00000635861 MRPS6P82932 125 aaKnown RBP21.02■□□□□ 0.96
CLN3-241ENST00000635861 FBXO47Q5MNV8 452 aa21.02■□□□□ 0.96
CLN3-241ENST00000635861 RASEFQ8IZ41 740 aa21.02■□□□□ 0.96
CLN3-241ENST00000635861 DNAJB3Q8WWF6 145 aa21.02■□□□□ 0.96
CLN3-241ENST00000635861 NECAB3Q96P71 396 aaPredicted RBP21.02■□□□□ 0.96
CLN3-241ENST00000635861 PCYT2Q99447 389 aa21.02■□□□□ 0.96
CLN3-241ENST00000635861 FTHL17Q9BXU8 183 aa21.02■□□□□ 0.96
CLN3-241ENST00000635861 KIAA1671Q9BY89 1806 aa21.02■□□□□ 0.95
CLN3-241ENST00000635861 C5orf67F2Z3F1 127 aa21.01■□□□□ 0.95
CLN3-241ENST00000635861 M0QZ92 97 aa21.01■□□□□ 0.95
CLN3-241ENST00000635861 ATG7O95352 703 aa21.01■□□□□ 0.95
CLN3-241ENST00000635861 RB1P06400 928 aa21.01■□□□□ 0.95
CLN3-241ENST00000635861 INSRRP14616 1297 aa21.01■□□□□ 0.95
CLN3-241ENST00000635861 STAT5BP51692 787 aa21.01■□□□□ 0.95
CLN3-241ENST00000635861 ACTR2P61160 394 aa21.01■□□□□ 0.95
CLN3-241ENST00000635861 GPM6BQ13491 265 aa21.01■□□□□ 0.95
CLN3-241ENST00000635861 ADCK5Q3MIX3 580 aa21.01■□□□□ 0.95
CLN3-241ENST00000635861 LEXMQ3ZCV2 418 aa21.01■□□□□ 0.95
CLN3-241ENST00000635861 FIBCD1Q8N539 461 aa21.01■□□□□ 0.95
CLN3-241ENST00000635861 AGO4Q9HCK5 861 aaKnown RBP21.01■□□□□ 0.95
CLN3-241ENST00000635861 PCDHA2Q9Y5H9 948 aa21.01■□□□□ 0.95
CLN3-241ENST00000635861 CDY2AQ9Y6F7 541 aa21.01■□□□□ 0.95
CLN3-241ENST00000635861 MYO7AQ13402 2215 aa21.01■□□□□ 0.95
CLN3-241ENST00000635861 PFKFB3Q16875 520 aaPredicted RBP21■□□□□ 0.95
CLN3-241ENST00000635861 NME8Q8N427 588 aa21■□□□□ 0.95
CLN3-241ENST00000635861 CCDC12Q8WUD4 166 aaPredicted RBP21■□□□□ 0.95
CLN3-241ENST00000635861 KCNB2Q92953 911 aa21■□□□□ 0.95
CLN3-241ENST00000635861 TCEANC2Q96MN5 208 aa21■□□□□ 0.95
CLN3-241ENST00000635861 LMAN2LQ9H0V9 348 aa21■□□□□ 0.95
CLN3-241ENST00000635861 RC3H2Q9HBD1 1191 aaKnown RBP21■□□□□ 0.95
CLN3-241ENST00000635861 TRPC6Q9Y210 931 aa21■□□□□ 0.95
CLN3-241ENST00000635861 ADGRA3Q8IWK6 1321 aa21■□□□□ 0.95
CLN3-241ENST00000635861 NID2Q14112 1375 aa21■□□□□ 0.95
CLN3-241ENST00000635861 ESYT2A0FGR8 921 aa20.99■□□□□ 0.95
CLN3-241ENST00000635861 ARP10275 920 aa20.99■□□□□ 0.95
CLN3-241ENST00000635861 COL9A1P20849 921 aa20.99■□□□□ 0.95
CLN3-241ENST00000635861 FGD1P98174 961 aa20.99■□□□□ 0.95
CLN3-241ENST00000635861 PLCB4Q15147 1175 aa20.99■□□□□ 0.95
CLN3-241ENST00000635861 PUS10Q3MIT2 529 aaKnown RBP20.99■□□□□ 0.95
CLN3-241ENST00000635861 FBXL16Q8N461 479 aa20.99■□□□□ 0.95
CLN3-241ENST00000635861 CYP2W1Q8TAV3 490 aa20.99■□□□□ 0.95
CLN3-241ENST00000635861 FAM217BQ9NTX9 383 aaPredicted RBP20.99■□□□□ 0.95
CLN3-241ENST00000635861 KDM3AQ9Y4C1 1321 aa20.99■□□□□ 0.95
CLN3-241ENST00000635861 TRPV2Q9Y5S1 764 aa20.99■□□□□ 0.95
CLN3-241ENST00000635861 IGKV6D-21A0A0A0MT36 114 aa20.98■□□□□ 0.95
CLN3-241ENST00000635861 SMIM35A0A1B0GVV1 85 aa20.98■□□□□ 0.95
CLN3-241ENST00000635861 ENPP3O14638 875 aa20.98■□□□□ 0.95
CLN3-241ENST00000635861 CYP3A4P08684 503 aa20.98■□□□□ 0.95
CLN3-241ENST00000635861 CDC27P30260 824 aa20.98■□□□□ 0.95
CLN3-241ENST00000635861 ZNF76P36508 570 aa20.98■□□□□ 0.95
CLN3-241ENST00000635861 METAP2P50579 478 aaKnown RBP eCLIP20.98■□□□□ 0.95
CLN3-241ENST00000635861 IGBP1P78318 339 aa20.98■□□□□ 0.95
CLN3-241ENST00000635861 ITGB3BPQ13352 177 aaPredicted RBP20.98■□□□□ 0.95
CLN3-241ENST00000635861 FAM160B1Q5W0V3 765 aa20.98■□□□□ 0.95
CLN3-241ENST00000635861 BANK1Q8NDB2 785 aa20.98■□□□□ 0.95
CLN3-241ENST00000635861 CLP1Q92989 425 aaKnown RBP20.98■□□□□ 0.95
Retrieved 100 of 20,778 RNA–protein pairs in 40 ms