RNA–Protein interactions for RNA: ENST00000631321.1

LINC00540-203, long intergenic non-protein coding RNA 540, humanhuman

TSL 2 BASIC

Gene LINC00540, Length 2,412 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-203ENST00000631321 GMCL1P1Q8NEA9 526 aa14.03□□□□□ -0.16
LINC00540-203ENST00000631321 AMNQ9BXJ7 453 aa14.03□□□□□ -0.16
LINC00540-203ENST00000631321 GDF3Q9NR23 364 aa14.03□□□□□ -0.16
LINC00540-203ENST00000631321 PI4KBQ9UBF8 816 aa14.03□□□□□ -0.16
LINC00540-203ENST00000631321 HDAC9Q9UKV0 1011 aa14.03□□□□□ -0.16
LINC00540-203ENST00000631321 DNM3Q9UQ16 869 aa14.03□□□□□ -0.16
LINC00540-203ENST00000631321 ATP8B3O60423 1300 aa14.03□□□□□ -0.16
LINC00540-203ENST00000631321 CES2O00748 559 aa14.03□□□□□ -0.16
LINC00540-203ENST00000631321 PDXKO00764 312 aa14.03□□□□□ -0.16
LINC00540-203ENST00000631321 ANXA13P27216 316 aa14.03□□□□□ -0.16
LINC00540-203ENST00000631321 HOXD13P35453 343 aa14.03□□□□□ -0.16
LINC00540-203ENST00000631321 FKBP1AP62942 108 aaKnown RBP14.03□□□□□ -0.16
LINC00540-203ENST00000631321 SLC7A5Q01650 507 aa14.03□□□□□ -0.16
LINC00540-203ENST00000631321 IRF2BP2Q7Z5L9 587 aa14.03□□□□□ -0.16
LINC00540-203ENST00000631321 KCTD17Q8N5Z5 321 aa14.03□□□□□ -0.16
LINC00540-203ENST00000631321 GMCL1Q96IK5 515 aa14.03□□□□□ -0.16
LINC00540-203ENST00000631321 INPP4AQ96PE3 977 aaPredicted RBP14.03□□□□□ -0.16
LINC00540-203ENST00000631321 BZW2Q9Y6E2 419 aaKnown RBP14.03□□□□□ -0.16
LINC00540-203ENST00000631321 ADAMTSL1Q8N6G6 1762 aa14.03□□□□□ -0.16
LINC00540-203ENST00000631321 SIPA1L1O43166 1804 aa14.02□□□□□ -0.16
LINC00540-203ENST00000631321 UBAP1LF5GYI3 381 aa14.02□□□□□ -0.16
LINC00540-203ENST00000631321 MATR3P43243 847 aaKnown RBP eCLIP14.02□□□□□ -0.16
LINC00540-203ENST00000631321 NAP1L1P55209 391 aaKnown RBP14.02□□□□□ -0.16
LINC00540-203ENST00000631321 PSMC6P62333 389 aa14.02□□□□□ -0.16
LINC00540-203ENST00000631321 HDLBPQ00341 1268 aaKnown RBP14.02□□□□□ -0.16
LINC00540-203ENST00000631321 SF3B2Q13435 895 aaKnown RBP14.02□□□□□ -0.16
LINC00540-203ENST00000631321 PRR16Q569H4 304 aa14.02□□□□□ -0.16
LINC00540-203ENST00000631321 SRLQ86TD4 932 aa14.02□□□□□ -0.16
LINC00540-203ENST00000631321 FAM133AQ8N9E0 248 aa14.02□□□□□ -0.16
LINC00540-203ENST00000631321 FAM76AQ8TAV0 307 aa14.02□□□□□ -0.16
LINC00540-203ENST00000631321 MS4A14Q96JA4 679 aa14.02□□□□□ -0.16
LINC00540-203ENST00000631321 FAM198AQ9UFP1 575 aa14.02□□□□□ -0.16
LINC00540-203ENST00000631321 ARMCX3Q9UH62 379 aaPredicted RBP14.02□□□□□ -0.16
LINC00540-203ENST00000631321 FBXL5Q9UKA1 691 aa14.02□□□□□ -0.16
LINC00540-203ENST00000631321 ANKRD31Q8N7Z5 1873 aa14.02□□□□□ -0.17
LINC00540-203ENST00000631321 DDTLA6NHG4 134 aaPredicted RBP14.02□□□□□ -0.17
LINC00540-203ENST00000631321 GOLGA8KD6RF30 607 aa14.02□□□□□ -0.17
LINC00540-203ENST00000631321 SLC16A3O15427 465 aaKnown RBP14.02□□□□□ -0.17
LINC00540-203ENST00000631321 AFPP02771 609 aaKnown RBP14.02□□□□□ -0.17
LINC00540-203ENST00000631321 EPS15P42566 896 aa14.02□□□□□ -0.17
LINC00540-203ENST00000631321 KIAA0753Q2KHM9 967 aa14.02□□□□□ -0.17
LINC00540-203ENST00000631321 SHROOM1Q2M3G4 852 aaPredicted RBP14.02□□□□□ -0.17
LINC00540-203ENST00000631321 TMEM179Q6ZVK1 233 aa14.02□□□□□ -0.17
LINC00540-203ENST00000631321 SH3BP5LQ7L8J4 393 aa14.02□□□□□ -0.17
LINC00540-203ENST00000631321 PODNQ7Z5L7 613 aa14.02□□□□□ -0.17
LINC00540-203ENST00000631321 UIMC1Q96RL1 719 aa14.02□□□□□ -0.17
LINC00540-203ENST00000631321 REEP2Q9BRK0 252 aa14.02□□□□□ -0.17
LINC00540-203ENST00000631321 ADAMTS1Q9UHI8 967 aa14.02□□□□□ -0.17
LINC00540-203ENST00000631321 GOLGA6CA6NDK9 693 aa14.01□□□□□ -0.17
LINC00540-203ENST00000631321 FAM86B1E9PN63 330 aa14.01□□□□□ -0.17
LINC00540-203ENST00000631321 CALUO43852 315 aaPredicted RBP14.01□□□□□ -0.17
LINC00540-203ENST00000631321 FAM86B2P0C5J1 330 aa14.01□□□□□ -0.17
LINC00540-203ENST00000631321 GOLGA6DP0CG33 693 aa14.01□□□□□ -0.17
LINC00540-203ENST00000631321 ALDH1B1P30837 517 aa14.01□□□□□ -0.17
LINC00540-203ENST00000631321 PRKCIP41743 596 aa14.01□□□□□ -0.17
LINC00540-203ENST00000631321 ICA1Q05084 483 aa14.01□□□□□ -0.17
LINC00540-203ENST00000631321 FBXO11Q86XK2 927 aa14.01□□□□□ -0.17
LINC00540-203ENST00000631321 SFR1Q86XK3 245 aa14.01□□□□□ -0.17
LINC00540-203ENST00000631321 IFT20Q8IY31 132 aa14.01□□□□□ -0.17
LINC00540-203ENST00000631321 POLR3CQ9BUI4 534 aaPredicted RBP14.01□□□□□ -0.17
LINC00540-203ENST00000631321 GOLGA6AQ9NYA3 693 aa14.01□□□□□ -0.17
LINC00540-203ENST00000631321 VAV3Q9UKW4 847 aa14.01□□□□□ -0.17
LINC00540-203ENST00000631321 NENFQ9UMX5 172 aa14.01□□□□□ -0.17
LINC00540-203ENST00000631321 MYH10P35580 1976 aa14.01□□□□□ -0.17
LINC00540-203ENST00000631321 F5H6K3 240 aa14.01□□□□□ -0.17
LINC00540-203ENST00000631321 OPA1O60313 960 aa14.01□□□□□ -0.17
LINC00540-203ENST00000631321 PPFIA4O75335 1185 aa14.01□□□□□ -0.17
LINC00540-203ENST00000631321 FTCDO95954 541 aa14.01□□□□□ -0.17
LINC00540-203ENST00000631321 CYP3A4P08684 503 aa14.01□□□□□ -0.17
LINC00540-203ENST00000631321 UCHL3P15374 230 aa14.01□□□□□ -0.17
LINC00540-203ENST00000631321 KLRC3Q07444 240 aa14.01□□□□□ -0.17
LINC00540-203ENST00000631321 PABPC4Q13310 644 aaKnown RBP eCLIP14.01□□□□□ -0.17
LINC00540-203ENST00000631321 FOXR1Q6PIV2 292 aa14.01□□□□□ -0.17
LINC00540-203ENST00000631321 BTNL9Q6UXG8 535 aa14.01□□□□□ -0.17
LINC00540-203ENST00000631321 PPP1R3FQ6ZSY5 799 aaPredicted RBP14.01□□□□□ -0.17
LINC00540-203ENST00000631321 TEX2Q8IWB9 1127 aa14.01□□□□□ -0.17
LINC00540-203ENST00000631321 TSEN2Q8NCE0 465 aaKnown RBP14.01□□□□□ -0.17
LINC00540-203ENST00000631321 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP14.01□□□□□ -0.17
LINC00540-203ENST00000631321 PACSIN1Q9BY11 444 aa14.01□□□□□ -0.17
LINC00540-203ENST00000631321 METTL14Q9HCE5 456 aaKnown RBP14.01□□□□□ -0.17
LINC00540-203ENST00000631321 TYW1Q9NV66 732 aaKnown RBP14.01□□□□□ -0.17
LINC00540-203ENST00000631321 FEZ2Q9UHY8 353 aaPredicted RBP14.01□□□□□ -0.17
LINC00540-203ENST00000631321 RRP15Q9Y3B9 282 aaKnown RBP14.01□□□□□ -0.17
LINC00540-203ENST00000631321 NRXN2Q9P2S2 1712 aa14.01□□□□□ -0.17
LINC00540-203ENST00000631321 MYO1CO00159 1063 aa14□□□□□ -0.17
LINC00540-203ENST00000631321 GLI1P08151 1106 aa14□□□□□ -0.17
LINC00540-203ENST00000631321 PON1P27169 355 aa14□□□□□ -0.17
LINC00540-203ENST00000631321 MRPS25P82663 173 aaKnown RBP14□□□□□ -0.17
LINC00540-203ENST00000631321 PTK2Q05397 1052 aa14□□□□□ -0.17
LINC00540-203ENST00000631321 SLC20A2Q08357 652 aa14□□□□□ -0.17
LINC00540-203ENST00000631321 PPFIA1Q13136 1202 aa14□□□□□ -0.17
LINC00540-203ENST00000631321 EPHA7Q15375 998 aa14□□□□□ -0.17
LINC00540-203ENST00000631321 EXOC3L4Q17RC7 722 aa14□□□□□ -0.17
LINC00540-203ENST00000631321 SYDE2Q5VT97 1194 aa14□□□□□ -0.17
LINC00540-203ENST00000631321 GBP6Q6ZN66 633 aa14□□□□□ -0.17
LINC00540-203ENST00000631321 ZNF571Q7Z3V5 609 aaPredicted RBP14□□□□□ -0.17
LINC00540-203ENST00000631321 MREGQ8N565 214 aa14□□□□□ -0.17
LINC00540-203ENST00000631321 HINFPQ9BQA5 517 aa14□□□□□ -0.17
LINC00540-203ENST00000631321 ZHX3Q9H4I2 956 aa14□□□□□ -0.17
LINC00540-203ENST00000631321 LCMT1Q9UIC8 334 aa14□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 73.7 ms