RNA–Protein interactions for RNA: ENST00000628023.3

CLN3-239, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,183 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-239ENST00000628023 HIPK3Q9H422 1215 aa20.42■□□□□ 0.86
CLN3-239ENST00000628023 AZI2Q9H6S1 392 aa20.42■□□□□ 0.86
CLN3-239ENST00000628023 SAMM50Q9Y512 469 aa20.42■□□□□ 0.86
CLN3-239ENST00000628023 CUL9Q8IWT3 2517 aa20.41■□□□□ 0.86
CLN3-239ENST00000628023 GSTTP1A0A1W2PQM5 241 aa20.41■□□□□ 0.86
CLN3-239ENST00000628023 BACH1O14867 736 aa20.41■□□□□ 0.86
CLN3-239ENST00000628023 DHX15O43143 795 aaKnown RBP20.41■□□□□ 0.86
CLN3-239ENST00000628023 BAG4O95429 457 aaKnown RBP20.41■□□□□ 0.86
CLN3-239ENST00000628023 CCNE2O96020 404 aa20.41■□□□□ 0.86
CLN3-239ENST00000628023 SYT1P21579 422 aa20.41■□□□□ 0.86
CLN3-239ENST00000628023 DNAJB2P25686 324 aa20.41■□□□□ 0.86
CLN3-239ENST00000628023 CALCRLQ16602 461 aa20.41■□□□□ 0.86
CLN3-239ENST00000628023 KIAA0753Q2KHM9 967 aa20.41■□□□□ 0.86
CLN3-239ENST00000628023 TMEM240Q5SV17 173 aa20.41■□□□□ 0.86
CLN3-239ENST00000628023 ZNF746Q6NUN9 644 aaPredicted RBP20.41■□□□□ 0.86
CLN3-239ENST00000628023 MYLIPQ8WY64 445 aa20.41■□□□□ 0.86
CLN3-239ENST00000628023 KAT2BQ92831 832 aa20.41■□□□□ 0.86
CLN3-239ENST00000628023 C16orf70Q9BSU1 422 aa20.41■□□□□ 0.86
CLN3-239ENST00000628023 SCN10AQ9Y5Y9 1956 aa20.41■□□□□ 0.86
CLN3-239ENST00000628023 H3BRB1 525 aa20.4■□□□□ 0.86
CLN3-239ENST00000628023 TBX3O15119 743 aa20.4■□□□□ 0.86
CLN3-239ENST00000628023 GRIN2DO15399 1336 aa20.4■□□□□ 0.86
CLN3-239ENST00000628023 FOSL2P15408 326 aa20.4■□□□□ 0.86
CLN3-239ENST00000628023 MARK3P27448 753 aa20.4■□□□□ 0.86
CLN3-239ENST00000628023 CYP2C18P33260 490 aa20.4■□□□□ 0.86
CLN3-239ENST00000628023 NFRKBQ6P4R8 1299 aa20.4■□□□□ 0.86
CLN3-239ENST00000628023 ZNF365Q70YC5 407 aa20.4■□□□□ 0.86
CLN3-239ENST00000628023 SMAP1Q8IYB5 467 aaPredicted RBP20.4■□□□□ 0.86
CLN3-239ENST00000628023 SLFN12Q8IYM2 578 aa20.4■□□□□ 0.86
CLN3-239ENST00000628023 C7orf31Q8N865 590 aa20.4■□□□□ 0.86
CLN3-239ENST00000628023 PPP1R13LQ8WUF5 828 aa20.4■□□□□ 0.86
CLN3-239ENST00000628023 FAM20AQ96MK3 541 aa20.4■□□□□ 0.86
CLN3-239ENST00000628023 SMARCAD1Q9H4L7 1026 aa20.4■□□□□ 0.86
CLN3-239ENST00000628023 TUT1Q9H6E5 874 aaKnown RBP20.4■□□□□ 0.86
CLN3-239ENST00000628023 KCNMB3Q9NPA1 279 aa20.4■□□□□ 0.86
CLN3-239ENST00000628023 IL23AQ9NPF7 189 aa20.4■□□□□ 0.86
CLN3-239ENST00000628023 EMSYQ7Z589 1322 aa20.39■□□□□ 0.85
CLN3-239ENST00000628023 WDR64B1ANS9 1081 aa20.39■□□□□ 0.85
CLN3-239ENST00000628023 WNT7AO00755 349 aa20.39■□□□□ 0.85
CLN3-239ENST00000628023 SUPT20HL2P0C7V6 817 aa20.39■□□□□ 0.85
CLN3-239ENST00000628023 ZNF174Q15697 407 aa20.39■□□□□ 0.85
CLN3-239ENST00000628023 FAM160B1Q5W0V3 765 aa20.39■□□□□ 0.85
CLN3-239ENST00000628023 C16orf59Q7L2K0 433 aa20.39■□□□□ 0.85
CLN3-239ENST00000628023 FERMT3Q86UX7 667 aa20.39■□□□□ 0.85
CLN3-239ENST00000628023 TIFAQ96CG3 184 aa20.39■□□□□ 0.85
CLN3-239ENST00000628023 STX6O43752 255 aa20.38■□□□□ 0.85
CLN3-239ENST00000628023 PSMD10O75832 226 aa20.38■□□□□ 0.85
CLN3-239ENST00000628023 FGBP02675 491 aa20.38■□□□□ 0.85
CLN3-239ENST00000628023 PSAPP07602 524 aa20.38■□□□□ 0.85
CLN3-239ENST00000628023 ACRP10323 421 aa20.38■□□□□ 0.85
CLN3-239ENST00000628023 JAK3P52333 1124 aa20.38■□□□□ 0.85
CLN3-239ENST00000628023 ORC2Q13416 577 aaPredicted RBP20.38■□□□□ 0.85
CLN3-239ENST00000628023 NBR1Q14596 966 aa20.38■□□□□ 0.85
CLN3-239ENST00000628023 RILPL1Q5EBL4 403 aa20.38■□□□□ 0.85
CLN3-239ENST00000628023 MIER3Q7Z3K6 550 aa20.38■□□□□ 0.85
CLN3-239ENST00000628023 BRAPQ7Z569 592 aa20.38■□□□□ 0.85
CLN3-239ENST00000628023 UNC45AQ9H3U1 944 aa20.38■□□□□ 0.85
CLN3-239ENST00000628023 DISC1Q9NRI5 854 aa20.38■□□□□ 0.85
CLN3-239ENST00000628023 ERAP1Q9NZ08 941 aa20.38■□□□□ 0.85
CLN3-239ENST00000628023 NOD1Q9Y239 953 aa20.38■□□□□ 0.85
CLN3-239ENST00000628023 PCDHA10Q9Y5I2 948 aa20.38■□□□□ 0.85
CLN3-239ENST00000628023 HAS3O00219 553 aa20.37■□□□□ 0.85
CLN3-239ENST00000628023 B4GALT4O60513 344 aa20.37■□□□□ 0.85
CLN3-239ENST00000628023 LGR5O75473 907 aa20.37■□□□□ 0.85
CLN3-239ENST00000628023 SFNP31947 248 aa20.37■□□□□ 0.85
CLN3-239ENST00000628023 STAT5BP51692 787 aa20.37■□□□□ 0.85
CLN3-239ENST00000628023 PTPN11Q06124 597 aaPredicted RBP20.37■□□□□ 0.85
CLN3-239ENST00000628023 ABHD15Q6UXT9 468 aa20.37■□□□□ 0.85
CLN3-239ENST00000628023 RPUSD2Q8IZ73 545 aaKnown RBP20.37■□□□□ 0.85
CLN3-239ENST00000628023 HAS1Q92839 578 aa20.37■□□□□ 0.85
CLN3-239ENST00000628023 TRPV6Q9H1D0 765 aa20.37■□□□□ 0.85
CLN3-239ENST00000628023 ZNF576Q9H609 170 aa20.37■□□□□ 0.85
CLN3-239ENST00000628023 ZNF302Q9NR11 478 aa20.37■□□□□ 0.85
CLN3-239ENST00000628023 ATG7O95352 703 aa20.36■□□□□ 0.85
CLN3-239ENST00000628023 OR52Z1P0C646 297 aa20.36■□□□□ 0.85
CLN3-239ENST00000628023 RASIP1Q5U651 963 aa20.36■□□□□ 0.85
CLN3-239ENST00000628023 SWSAP1Q6NVH7 229 aa20.36■□□□□ 0.85
CLN3-239ENST00000628023 PDXDC2PQ6P474 469 aa20.36■□□□□ 0.85
CLN3-239ENST00000628023 CCDC60Q8IWA6 550 aaPredicted RBP20.36■□□□□ 0.85
CLN3-239ENST00000628023 CKAP2LQ8IYA6 745 aa20.36■□□□□ 0.85
CLN3-239ENST00000628023 HERVK_113Q902F9 699 aa20.36■□□□□ 0.85
CLN3-239ENST00000628023 PCYT2Q99447 389 aa20.36■□□□□ 0.85
CLN3-239ENST00000628023 NOC4LQ9BVI4 516 aaKnown RBP20.36■□□□□ 0.85
CLN3-239ENST00000628023 TRMT13Q9NUP7 481 aaKnown RBP20.36■□□□□ 0.85
CLN3-239ENST00000628023 HDAC6Q9UBN7 1215 aa20.36■□□□□ 0.85
CLN3-239ENST00000628023 GTF2IRD1Q9UHL9 959 aa20.36■□□□□ 0.85
CLN3-239ENST00000628023 MSRAQ9UJ68 235 aa20.36■□□□□ 0.85
CLN3-239ENST00000628023 TRPC6Q9Y210 931 aa20.36■□□□□ 0.85
CLN3-239ENST00000628023 SMIM10L2AP0DMW4 78 aa20.35■□□□□ 0.85
CLN3-239ENST00000628023 SMIM10L2BP0DMW5 78 aa20.35■□□□□ 0.85
CLN3-239ENST00000628023 TXKP42681 527 aa20.35■□□□□ 0.85
CLN3-239ENST00000628023 TOB1P50616 345 aaPredicted RBP20.35■□□□□ 0.85
CLN3-239ENST00000628023 CCL23P55773 120 aa20.35■□□□□ 0.85
CLN3-239ENST00000628023 PPP2R5CQ13362 524 aa20.35■□□□□ 0.85
CLN3-239ENST00000628023 NCAPH2Q6IBW4 605 aa20.35■□□□□ 0.85
CLN3-239ENST00000628023 PLPPR4Q7Z2D5 763 aa20.35■□□□□ 0.85
CLN3-239ENST00000628023 SESTD1Q86VW0 696 aa20.35■□□□□ 0.85
CLN3-239ENST00000628023 RDM1Q8NG50 284 aa20.35■□□□□ 0.85
CLN3-239ENST00000628023 TMEM60Q9H2L4 133 aa20.35■□□□□ 0.85
CLN3-239ENST00000628023 GABBR1Q9UBS5 961 aa20.35■□□□□ 0.85
Retrieved 100 of 20,778 RNA–protein pairs in 33.9 ms