RNA–Protein interactions for RNA: ENST00000621562.1

U1.39-201, humanhuman

BASIC

Gene U1, Length 146 nt, Biotype snRNA, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
U1.39-201ENST00000621562 ERCC3P19447 782 aa3.56□□□□□ -1.84
U1.39-201ENST00000621562 MCM3P25205 808 aa3.56□□□□□ -1.84
U1.39-201ENST00000621562 KLRC1P26715 233 aa3.56□□□□□ -1.84
U1.39-201ENST00000621562 RPA1P27694 616 aa3.56□□□□□ -1.84
U1.39-201ENST00000621562 GGCXP38435 758 aa3.56□□□□□ -1.84
U1.39-201ENST00000621562 MAGEA1P43355 309 aa3.56□□□□□ -1.84
U1.39-201ENST00000621562 CASP4P49662 377 aa3.56□□□□□ -1.84
U1.39-201ENST00000621562 SCNN1DP51172 638 aa3.56□□□□□ -1.84
U1.39-201ENST00000621562 USP11P51784 963 aa3.56□□□□□ -1.84
U1.39-201ENST00000621562 EPHB4P54760 987 aa3.56□□□□□ -1.84
U1.39-201ENST00000621562 MCCD1P59942 119 aaPredicted RBP3.56□□□□□ -1.84
U1.39-201ENST00000621562 POLR2FP61218 127 aaKnown RBP3.56□□□□□ -1.84
U1.39-201ENST00000621562 SKOR1P84550 965 aa3.56□□□□□ -1.84
U1.39-201ENST00000621562 ARHGAP4P98171 946 aa3.56□□□□□ -1.84
U1.39-201ENST00000621562 HDLBPQ00341 1268 aaKnown RBP3.56□□□□□ -1.84
U1.39-201ENST00000621562 FKBP3Q00688 224 aaKnown RBP3.56□□□□□ -1.84
U1.39-201ENST00000621562 GFPT1Q06210 699 aaPredicted RBP3.56□□□□□ -1.84
U1.39-201ENST00000621562 SLC20A2Q08357 652 aa3.56□□□□□ -1.84
U1.39-201ENST00000621562 GIT2Q14161 759 aa3.56□□□□□ -1.84
U1.39-201ENST00000621562 SPA17Q15506 151 aa3.56□□□□□ -1.84
U1.39-201ENST00000621562 SLC15A2Q16348 729 aa3.56□□□□□ -1.84
U1.39-201ENST00000621562 SLC18A3Q16572 532 aa3.56□□□□□ -1.84
U1.39-201ENST00000621562 CCDC96Q2M329 555 aa3.56□□□□□ -1.84
U1.39-201ENST00000621562 TSR1Q2NL82 804 aaKnown RBP3.56□□□□□ -1.84
U1.39-201ENST00000621562 MAP9Q49MG5 647 aa3.56□□□□□ -1.84
U1.39-201ENST00000621562 CCDC40Q4G0X9 1142 aa3.56□□□□□ -1.84
U1.39-201ENST00000621562 KIAA1755Q5JYT7 1200 aa3.56□□□□□ -1.84
U1.39-201ENST00000621562 EMC10Q5UCC4 262 aa3.56□□□□□ -1.84
U1.39-201ENST00000621562 SFMBT2Q5VUG0 894 aa3.56□□□□□ -1.84
U1.39-201ENST00000621562 EMBQ6PCB8 327 aa3.56□□□□□ -1.84
U1.39-201ENST00000621562 PPP4R3CPQ6ZMV5 832 aa3.56□□□□□ -1.84
U1.39-201ENST00000621562 ZNF571Q7Z3V5 609 aaPredicted RBP3.56□□□□□ -1.84
U1.39-201ENST00000621562 IRF2BP2Q7Z5L9 587 aa3.56□□□□□ -1.84
U1.39-201ENST00000621562 FRMD5Q7Z6J6 570 aa3.56□□□□□ -1.84
U1.39-201ENST00000621562 SLFN11Q7Z7L1 901 aa3.56□□□□□ -1.84
U1.39-201ENST00000621562 SRLQ86TD4 932 aa3.56□□□□□ -1.84
U1.39-201ENST00000621562 SFR1Q86XK3 245 aa3.56□□□□□ -1.84
U1.39-201ENST00000621562 CATSPER3Q86XQ3 398 aa3.56□□□□□ -1.84
U1.39-201ENST00000621562 NELFCDQ8IXH7 590 aa3.56□□□□□ -1.84
U1.39-201ENST00000621562 CCDC65Q8IXS2 484 aa3.56□□□□□ -1.84
U1.39-201ENST00000621562 SEPT12Q8IYM1 358 aa3.56□□□□□ -1.84
U1.39-201ENST00000621562 RNF10Q8N5U6 811 aaKnown RBP3.56□□□□□ -1.84
U1.39-201ENST00000621562 SYT2Q8N9I0 419 aaPredicted RBP3.56□□□□□ -1.84
U1.39-201ENST00000621562 GMCL1P1Q8NEA9 526 aa3.56□□□□□ -1.84
U1.39-201ENST00000621562 LNX1Q8TBB1 728 aaPredicted RBP3.56□□□□□ -1.84
U1.39-201ENST00000621562 AFAP1L1Q8TED9 768 aa3.56□□□□□ -1.84
U1.39-201ENST00000621562 CASKIN2Q8WXE0 1202 aa3.56□□□□□ -1.84
U1.39-201ENST00000621562 TEKT1Q969V4 418 aa3.56□□□□□ -1.84
U1.39-201ENST00000621562 SLC35C1Q96A29 364 aa3.56□□□□□ -1.84
U1.39-201ENST00000621562 ARL8AQ96BM9 186 aa3.56□□□□□ -1.84
U1.39-201ENST00000621562 ZBTB9Q96C00 473 aa3.56□□□□□ -1.84
U1.39-201ENST00000621562 GMCL1Q96IK5 515 aa3.56□□□□□ -1.84
U1.39-201ENST00000621562 MS4A14Q96JA4 679 aa3.56□□□□□ -1.84
U1.39-201ENST00000621562 CDK5RAP3Q96JB5 506 aa3.56□□□□□ -1.84
U1.39-201ENST00000621562 CCDC17Q96LX7 622 aa3.56□□□□□ -1.84
U1.39-201ENST00000621562 CCDC42Q96M95 316 aa3.56□□□□□ -1.84
U1.39-201ENST00000621562 ZDHHC15Q96MV8 337 aa3.56□□□□□ -1.84
U1.39-201ENST00000621562 UIMC1Q96RL1 719 aa3.56□□□□□ -1.84
U1.39-201ENST00000621562 NAP1L4Q99733 375 aaKnown RBP3.56□□□□□ -1.84
U1.39-201ENST00000621562 TSG101Q99816 390 aa3.56□□□□□ -1.84
U1.39-201ENST00000621562 REEP2Q9BRK0 252 aa3.56□□□□□ -1.84
U1.39-201ENST00000621562 POLR3CQ9BUI4 534 aaPredicted RBP3.56□□□□□ -1.84
U1.39-201ENST00000621562 WDR18Q9BV38 432 aa3.56□□□□□ -1.84
U1.39-201ENST00000621562 RUSC1Q9BVN2 902 aa3.56□□□□□ -1.84
U1.39-201ENST00000621562 MRIQ9BWK5 157 aa3.56□□□□□ -1.84
U1.39-201ENST00000621562 STRA6Q9BX79 667 aa3.56□□□□□ -1.84
U1.39-201ENST00000621562 RAB34Q9BZG1 259 aa3.56□□□□□ -1.84
U1.39-201ENST00000621562 LRRC27Q9C0I9 530 aa3.56□□□□□ -1.84
U1.39-201ENST00000621562 GPR88Q9GZN0 384 aa3.56□□□□□ -1.84
U1.39-201ENST00000621562 GLT8D2Q9H1C3 349 aa3.56□□□□□ -1.84
U1.39-201ENST00000621562 NUCKS1Q9H1E3 243 aaKnown RBP3.56□□□□□ -1.84
U1.39-201ENST00000621562 MMRN2Q9H8L6 949 aa3.56□□□□□ -1.84
U1.39-201ENST00000621562 PSTPIP2Q9H939 334 aa3.56□□□□□ -1.84
U1.39-201ENST00000621562 KANSL2Q9H9L4 492 aa3.56□□□□□ -1.84
U1.39-201ENST00000621562 NLRC4Q9NPP4 1024 aa3.56□□□□□ -1.84
U1.39-201ENST00000621562 KCNQ5Q9NR82 932 aa3.56□□□□□ -1.84
U1.39-201ENST00000621562 USP40Q9NVE5 1235 aa3.56□□□□□ -1.84
U1.39-201ENST00000621562 TBC1D7Q9P0N9 293 aa3.56□□□□□ -1.84
U1.39-201ENST00000621562 TSKSQ9UJT2 592 aa3.56□□□□□ -1.84
U1.39-201ENST00000621562 FBXL5Q9UKA1 691 aa3.56□□□□□ -1.84
U1.39-201ENST00000621562 HDAC9Q9UKV0 1011 aa3.56□□□□□ -1.84
U1.39-201ENST00000621562 KIAA1024Q9UPX6 916 aa3.56□□□□□ -1.84
U1.39-201ENST00000621562 STXBP5LQ9Y2K9 1186 aa3.56□□□□□ -1.84
U1.39-201ENST00000621562 SCN1AP35498 2009 aa3.56□□□□□ -1.84
U1.39-201ENST00000621562 TRIP12Q14669 1992 aaPredicted RBP3.56□□□□□ -1.84
U1.39-201ENST00000621562 CNTNAP1P78357 1384 aa3.55□□□□□ -1.84
U1.39-201ENST00000621562 DOCK3Q8IZD9 2030 aa3.55□□□□□ -1.84
U1.39-201ENST00000621562 UBE4BO95155 1302 aa3.55□□□□□ -1.84
U1.39-201ENST00000621562 RPTORQ8N122 1335 aa3.55□□□□□ -1.84
U1.39-201ENST00000621562 A0A0A6YYK5 440 aaPredicted RBP3.55□□□□□ -1.84
U1.39-201ENST00000621562 A0A1W2PRG0 241 aa3.55□□□□□ -1.84
U1.39-201ENST00000621562 GTPBP10A4D1E9 387 aaKnown RBP3.55□□□□□ -1.84
U1.39-201ENST00000621562 ZNF233A6NK53 670 aa3.55□□□□□ -1.84
U1.39-201ENST00000621562 F8W031 263 aaPredicted RBP3.55□□□□□ -1.84
U1.39-201ENST00000621562 H0YGN5 161 aa3.55□□□□□ -1.84
U1.39-201ENST00000621562 PIK3CDO00329 1044 aa3.55□□□□□ -1.84
U1.39-201ENST00000621562 TRAF5O00463 557 aa3.55□□□□□ -1.84
U1.39-201ENST00000621562 DDX3XO00571 662 aaKnown RBP eCLIP3.55□□□□□ -1.84
U1.39-201ENST00000621562 PDXKO00764 312 aa3.55□□□□□ -1.84
U1.39-201ENST00000621562 EIF3DO15371 548 aaKnown RBP eCLIP3.55□□□□□ -1.84
Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms