RNA–Protein interactions for RNA: ENST00000598201.5

SHKBP1-216, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 2,069 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-216ENST00000598201 BCRP11274 1271 aa18.89■□□□□ 0.62
SHKBP1-216ENST00000598201 DSG3P32926 999 aa18.89■□□□□ 0.62
SHKBP1-216ENST00000598201 HUNKP57058 714 aa18.89■□□□□ 0.62
SHKBP1-216ENST00000598201 TKFCQ3LXA3 575 aa18.89■□□□□ 0.62
SHKBP1-216ENST00000598201 RAD9BQ6WBX8 426 aa18.89■□□□□ 0.62
SHKBP1-216ENST00000598201 NSMFQ6X4W1 530 aa18.89■□□□□ 0.62
SHKBP1-216ENST00000598201 SAPCD2Q86UD0 394 aa18.89■□□□□ 0.62
SHKBP1-216ENST00000598201 RIT2Q99578 217 aa18.89■□□□□ 0.62
SHKBP1-216ENST00000598201 RNF146Q9NTX7 359 aa18.89■□□□□ 0.62
SHKBP1-216ENST00000598201 MAP3K20Q9NYL2 800 aaKnown RBP18.89■□□□□ 0.62
SHKBP1-216ENST00000598201 ADAMTS5Q9UNA0 930 aa18.89■□□□□ 0.62
SHKBP1-216ENST00000598201 DHX15O43143 795 aaKnown RBP18.89■□□□□ 0.61
SHKBP1-216ENST00000598201 FECHP22830 423 aa18.89■□□□□ 0.61
SHKBP1-216ENST00000598201 KLK7P49862 253 aa18.89■□□□□ 0.61
SHKBP1-216ENST00000598201 C1QTNF8P60827 252 aa18.89■□□□□ 0.61
SHKBP1-216ENST00000598201 TRIM14Q14142 442 aa18.89■□□□□ 0.61
SHKBP1-216ENST00000598201 FOXR2Q6PJQ5 311 aa18.89■□□□□ 0.61
SHKBP1-216ENST00000598201 RNF207Q6ZRF8 634 aa18.89■□□□□ 0.61
SHKBP1-216ENST00000598201 SFR1Q86XK3 245 aa18.89■□□□□ 0.61
SHKBP1-216ENST00000598201 TSG101Q99816 390 aa18.89■□□□□ 0.61
SHKBP1-216ENST00000598201 DESI2Q9BSY9 194 aa18.89■□□□□ 0.61
SHKBP1-216ENST00000598201 ABHD10Q9NUJ1 306 aa18.89■□□□□ 0.61
SHKBP1-216ENST00000598201 ABT1Q9ULW3 272 aaKnown RBP18.89■□□□□ 0.61
SHKBP1-216ENST00000598201 CSADQ9Y600 493 aa18.89■□□□□ 0.61
SHKBP1-216ENST00000598201 TTC26A0AVF1 554 aa18.88■□□□□ 0.61
SHKBP1-216ENST00000598201 UNCXA6NJT0 531 aa18.88■□□□□ 0.61
SHKBP1-216ENST00000598201 RASSF10A6NK89 507 aa18.88■□□□□ 0.61
SHKBP1-216ENST00000598201 TBC1D8BQ0IIM8 1120 aa18.88■□□□□ 0.61
SHKBP1-216ENST00000598201 ITGB3BPQ13352 177 aaPredicted RBP18.88■□□□□ 0.61
SHKBP1-216ENST00000598201 VGLL4Q14135 290 aa18.88■□□□□ 0.61
SHKBP1-216ENST00000598201 COG2Q14746 738 aa18.88■□□□□ 0.61
SHKBP1-216ENST00000598201 PGM5Q15124 567 aa18.88■□□□□ 0.61
SHKBP1-216ENST00000598201 EPHA7Q15375 998 aa18.88■□□□□ 0.61
SHKBP1-216ENST00000598201 RINT1Q6NUQ1 792 aa18.88■□□□□ 0.61
SHKBP1-216ENST00000598201 CATSPERGQ6ZRH7 1159 aa18.88■□□□□ 0.61
SHKBP1-216ENST00000598201 NIPA1Q7RTP0 329 aa18.88■□□□□ 0.61
SHKBP1-216ENST00000598201 CCDC51Q96ER9 411 aa18.88■□□□□ 0.61
SHKBP1-216ENST00000598201 KCTD10Q9H3F6 313 aa18.88■□□□□ 0.61
SHKBP1-216ENST00000598201 ZNF214Q9UL59 606 aaPredicted RBP18.88■□□□□ 0.61
SHKBP1-216ENST00000598201 SNCAIPQ9Y6H5 919 aa18.88■□□□□ 0.61
SHKBP1-216ENST00000598201 TLL2Q9Y6L7 1015 aa18.88■□□□□ 0.61
SHKBP1-216ENST00000598201 TPM1P09493 284 aa18.88■□□□□ 0.61
SHKBP1-216ENST00000598201 ERCC3P19447 782 aa18.88■□□□□ 0.61
SHKBP1-216ENST00000598201 KRT9P35527 623 aa18.88■□□□□ 0.61
SHKBP1-216ENST00000598201 BAATQ14032 418 aaPredicted RBP18.88■□□□□ 0.61
SHKBP1-216ENST00000598201 TMEM132BQ14DG7 1078 aa18.88■□□□□ 0.61
SHKBP1-216ENST00000598201 SNRNP48Q6IEG0 339 aaKnown RBP18.88■□□□□ 0.61
SHKBP1-216ENST00000598201 KCTD17Q8N5Z5 321 aa18.88■□□□□ 0.61
SHKBP1-216ENST00000598201 SAMD3Q8N6K7 520 aa18.88■□□□□ 0.61
SHKBP1-216ENST00000598201 CLMNQ96JQ2 1002 aa18.88■□□□□ 0.61
SHKBP1-216ENST00000598201 RMDN3Q96TC7 470 aa18.88■□□□□ 0.61
SHKBP1-216ENST00000598201 NAA15Q9BXJ9 866 aaKnown RBP18.88■□□□□ 0.61
SHKBP1-216ENST00000598201 AGO4Q9HCK5 861 aaKnown RBP18.88■□□□□ 0.61
SHKBP1-216ENST00000598201 JADE2Q9NQC1 790 aa18.88■□□□□ 0.61
SHKBP1-216ENST00000598201 CREBZFQ9NS37 354 aa18.88■□□□□ 0.61
SHKBP1-216ENST00000598201 PNMA2Q9UL42 364 aa18.88■□□□□ 0.61
SHKBP1-216ENST00000598201 COL11A1P12107 1806 aaPredicted RBP18.88■□□□□ 0.61
SHKBP1-216ENST00000598201 CCP110O43303 1012 aa18.87■□□□□ 0.61
SHKBP1-216ENST00000598201 SYCP1Q15431 976 aa18.87■□□□□ 0.61
SHKBP1-216ENST00000598201 BANK1Q8NDB2 785 aa18.87■□□□□ 0.61
SHKBP1-216ENST00000598201 PDCD2LQ9BRP1 358 aa18.87■□□□□ 0.61
SHKBP1-216ENST00000598201 PXMP2Q9NR77 195 aa18.87■□□□□ 0.61
SHKBP1-216ENST00000598201 TMOD4Q9NZQ9 345 aa18.87■□□□□ 0.61
SHKBP1-216ENST00000598201 PAXBP1Q9Y5B6 917 aa18.87■□□□□ 0.61
SHKBP1-216ENST00000598201 FGFR1OPO95684 399 aaKnown RBP18.86■□□□□ 0.61
SHKBP1-216ENST00000598201 MYCLP12524 364 aaPredicted RBP18.86■□□□□ 0.61
SHKBP1-216ENST00000598201 HOXD13P35453 343 aa18.86■□□□□ 0.61
SHKBP1-216ENST00000598201 ERVK-24P63145 666 aa18.86■□□□□ 0.61
SHKBP1-216ENST00000598201 C1orf186Q6ZWK4 172 aa18.86■□□□□ 0.61
SHKBP1-216ENST00000598201 CNKSR2Q8WXI2 1034 aa18.86■□□□□ 0.61
SHKBP1-216ENST00000598201 LXNQ9BS40 222 aa18.86■□□□□ 0.61
SHKBP1-216ENST00000598201 SFI1A8K8P3 1242 aa18.86■□□□□ 0.61
SHKBP1-216ENST00000598201 ZSCAN12O43309 604 aa18.86■□□□□ 0.61
SHKBP1-216ENST00000598201 MYBP10242 640 aa18.86■□□□□ 0.61
SHKBP1-216ENST00000598201 FKBP3Q00688 224 aaKnown RBP18.86■□□□□ 0.61
SHKBP1-216ENST00000598201 MTMR1Q13613 665 aa18.86■□□□□ 0.61
SHKBP1-216ENST00000598201 VWA3BQ502W6 1294 aa18.86■□□□□ 0.61
SHKBP1-216ENST00000598201 TRIM65Q6PJ69 517 aa18.86■□□□□ 0.61
SHKBP1-216ENST00000598201 SYT10Q6XYQ8 523 aa18.86■□□□□ 0.61
SHKBP1-216ENST00000598201 EPM2AIP1Q7L775 607 aaPredicted RBP18.86■□□□□ 0.61
SHKBP1-216ENST00000598201 TSC1Q92574 1164 aa18.86■□□□□ 0.61
SHKBP1-216ENST00000598201 SLC10A4Q96EP9 437 aa18.86■□□□□ 0.61
SHKBP1-216ENST00000598201 TTYH3Q9C0H2 523 aa18.86■□□□□ 0.61
SHKBP1-216ENST00000598201 KIF2AO00139 706 aaPredicted RBP18.85■□□□□ 0.61
SHKBP1-216ENST00000598201 GTF2F1P35269 517 aaKnown RBP eCLIP18.85■□□□□ 0.611e-6■■■■■ 54.6
SHKBP1-216ENST00000598201 OAZ1P54368 228 aa18.85■□□□□ 0.61
SHKBP1-216ENST00000598201 ERGIC2Q96RQ1 377 aa18.85■□□□□ 0.61
SHKBP1-216ENST00000598201 NDST4Q9H3R1 872 aa18.85■□□□□ 0.61
SHKBP1-216ENST00000598201 ELP3Q9H9T3 547 aa18.85■□□□□ 0.61
SHKBP1-216ENST00000598201 CAPN11Q9UMQ6 739 aa18.85■□□□□ 0.61
SHKBP1-216ENST00000598201 SPDYE16A6NNV3 312 aaPredicted RBP18.85■□□□□ 0.61
SHKBP1-216ENST00000598201 MUTP22033 750 aa18.85■□□□□ 0.61
SHKBP1-216ENST00000598201 MAN2A1Q16706 1144 aa18.85■□□□□ 0.61
SHKBP1-216ENST00000598201 SH3D19Q5HYK7 790 aa18.85■□□□□ 0.61
SHKBP1-216ENST00000598201 ARHGEF16Q5VV41 709 aa18.85■□□□□ 0.61
SHKBP1-216ENST00000598201 MIER3Q7Z3K6 550 aa18.85■□□□□ 0.61
SHKBP1-216ENST00000598201 NACC1Q96RE7 527 aa18.85■□□□□ 0.61
SHKBP1-216ENST00000598201 AGPAT5Q9NUQ2 364 aa18.85■□□□□ 0.61
SHKBP1-216ENST00000598201 FANCGO15287 622 aa18.84■□□□□ 0.61
SHKBP1-216ENST00000598201 ATP9AO75110 1047 aa18.84■□□□□ 0.61
Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms