RNA–Protein interactions for RNA: ENST00000597423.1

TRIM28-209, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 733 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-209ENST00000597423 FLT3LGP49771 235 aa17.02■□□□□ 0.32
TRIM28-209ENST00000597423 PRMT2P55345 433 aa17.02■□□□□ 0.32
TRIM28-209ENST00000597423 PNOCQ13519 176 aa17.02■□□□□ 0.32
TRIM28-209ENST00000597423 MCM6Q14566 821 aa17.02■□□□□ 0.32
TRIM28-209ENST00000597423 POTEGQ6S5H5 508 aa17.02■□□□□ 0.32
TRIM28-209ENST00000597423 ABHD15Q6UXT9 468 aa17.02■□□□□ 0.32
TRIM28-209ENST00000597423 C4orf19Q8IY42 314 aa17.02■□□□□ 0.32
TRIM28-209ENST00000597423 TRIML1Q8N9V2 468 aa17.02■□□□□ 0.32
TRIM28-209ENST00000597423 CCDC43Q96MW1 224 aaKnown RBP17.02■□□□□ 0.32
TRIM28-209ENST00000597423 LXNQ9BS40 222 aa17.02■□□□□ 0.32
TRIM28-209ENST00000597423 NAT10Q9H0A0 1025 aaKnown RBP17.02■□□□□ 0.32
TRIM28-209ENST00000597423 AZI2Q9H6S1 392 aa17.02■□□□□ 0.32
TRIM28-209ENST00000597423 BLOC1S4Q9NUP1 217 aa17.02■□□□□ 0.32
TRIM28-209ENST00000597423 TUBE1Q9UJT0 475 aa17.02■□□□□ 0.32
TRIM28-209ENST00000597423 PCDHA5Q9Y5H7 936 aa17.02■□□□□ 0.32
TRIM28-209ENST00000597423 E9PMD0 336 aa17.01■□□□□ 0.31
TRIM28-209ENST00000597423 KRT18P05783 430 aaKnown RBP17.01■□□□□ 0.31
TRIM28-209ENST00000597423 SP4Q02446 784 aa17.01■□□□□ 0.31
TRIM28-209ENST00000597423 DPYDQ12882 1025 aa17.01■□□□□ 0.31
TRIM28-209ENST00000597423 DHX8Q14562 1220 aaKnown RBP17.01■□□□□ 0.31
TRIM28-209ENST00000597423 ECM1Q16610 540 aa17.01■□□□□ 0.31
TRIM28-209ENST00000597423 STX1AQ16623 288 aa17.01■□□□□ 0.31
TRIM28-209ENST00000597423 DUSP28Q4G0W2 176 aa17.01■□□□□ 0.31
TRIM28-209ENST00000597423 NT5DC1Q5TFE4 455 aa17.01■□□□□ 0.31
TRIM28-209ENST00000597423 SWSAP1Q6NVH7 229 aa17.01■□□□□ 0.31
TRIM28-209ENST00000597423 SYT2Q8N9I0 419 aaPredicted RBP17.01■□□□□ 0.31
TRIM28-209ENST00000597423 BANK1Q8NDB2 785 aa17.01■□□□□ 0.31
TRIM28-209ENST00000597423 SPATA33Q96N06 139 aa17.01■□□□□ 0.31
TRIM28-209ENST00000597423 ARHGAP39Q9C0H5 1083 aa17.01■□□□□ 0.31
TRIM28-209ENST00000597423 KATNBL1Q9H079 304 aa17.01■□□□□ 0.31
TRIM28-209ENST00000597423 PDGFCQ9NRA1 345 aa17.01■□□□□ 0.31
TRIM28-209ENST00000597423 ANKEF1Q9NU02 776 aa17.01■□□□□ 0.31
TRIM28-209ENST00000597423 KCND2Q9NZV8 630 aa17.01■□□□□ 0.31
TRIM28-209ENST00000597423 GABBR1Q9UBS5 961 aa17.01■□□□□ 0.31
TRIM28-209ENST00000597423 DBR1Q9UK59 544 aaKnown RBP17.01■□□□□ 0.31
TRIM28-209ENST00000597423 FAM184BQ9ULE4 1060 aa17.01■□□□□ 0.31
TRIM28-209ENST00000597423 ZNF236Q9UL36 1845 aa17■□□□□ 0.31
TRIM28-209ENST00000597423 PVALEFA0A1B0GWK0 134 aa17■□□□□ 0.31
TRIM28-209ENST00000597423 ARHGEF35A5YM69 484 aa17■□□□□ 0.31
TRIM28-209ENST00000597423 CTGFP29279 349 aa17■□□□□ 0.31
TRIM28-209ENST00000597423 SARSP49591 514 aaKnown RBP17■□□□□ 0.31
TRIM28-209ENST00000597423 TNFAIP2Q03169 654 aa17■□□□□ 0.31
TRIM28-209ENST00000597423 TYRO3Q06418 890 aa17■□□□□ 0.31
TRIM28-209ENST00000597423 CCDC144BQ3MJ40 725 aa17■□□□□ 0.31
TRIM28-209ENST00000597423 BRDTQ58F21 947 aaPredicted RBP17■□□□□ 0.31
TRIM28-209ENST00000597423 CNNM4Q6P4Q7 775 aa17■□□□□ 0.31
TRIM28-209ENST00000597423 GRAMD1CQ8IYS0 662 aa17■□□□□ 0.31
TRIM28-209ENST00000597423 STAMQ92783 540 aa17■□□□□ 0.31
TRIM28-209ENST00000597423 EMID1Q96A84 441 aaPredicted RBP17■□□□□ 0.31
TRIM28-209ENST00000597423 ZNF302Q9NR11 478 aa17■□□□□ 0.31
TRIM28-209ENST00000597423 NRBP2Q9NSY0 501 aa17■□□□□ 0.31
TRIM28-209ENST00000597423 SRRDQ9UH36 339 aa17■□□□□ 0.31
TRIM28-209ENST00000597423 DACH1Q9UI36 760 aa17■□□□□ 0.31
TRIM28-209ENST00000597423 PLXNB2O15031 1838 aa17■□□□□ 0.31
TRIM28-209ENST00000597423 ZNFX1Q9P2E3 1918 aaKnown RBP17■□□□□ 0.31
TRIM28-209ENST00000597423 FOXN1O15353 648 aa16.99■□□□□ 0.31
TRIM28-209ENST00000597423 ARIH2O95376 493 aa16.99■□□□□ 0.31
TRIM28-209ENST00000597423 RPN1P04843 607 aaKnown RBP16.99■□□□□ 0.31
TRIM28-209ENST00000597423 CYP2C19P33261 490 aa16.99■□□□□ 0.31
TRIM28-209ENST00000597423 SLC26A2P50443 739 aa16.99■□□□□ 0.31
TRIM28-209ENST00000597423 NLRP12P59046 1061 aa16.99■□□□□ 0.31
TRIM28-209ENST00000597423 PRKCZQ05513 592 aa16.99■□□□□ 0.31
TRIM28-209ENST00000597423 GSE1Q14687 1217 aa16.99■□□□□ 0.31
TRIM28-209ENST00000597423 KCNK18Q7Z418 384 aa16.99■□□□□ 0.31
TRIM28-209ENST00000597423 SPATA20Q8TB22 786 aa16.99■□□□□ 0.31
TRIM28-209ENST00000597423 CD99L2Q8TCZ2 262 aa16.99■□□□□ 0.31
TRIM28-209ENST00000597423 TRIM9Q9C026 710 aa16.99■□□□□ 0.31
TRIM28-209ENST00000597423 BHMT2Q9H2M3 363 aa16.99■□□□□ 0.31
TRIM28-209ENST00000597423 FLRT1Q9NZU1 646 aa16.99■□□□□ 0.31
TRIM28-209ENST00000597423 GABRQQ9UN88 632 aa16.99■□□□□ 0.31
TRIM28-209ENST00000597423 Q9Y3F1 56 aa16.99■□□□□ 0.31
TRIM28-209ENST00000597423 IGKV6D-21A0A0A0MT36 114 aa16.98■□□□□ 0.31
TRIM28-209ENST00000597423 GSTTP1A0A1W2PQM5 241 aa16.98■□□□□ 0.31
TRIM28-209ENST00000597423 SORBS3O60504 671 aa16.98■□□□□ 0.31
TRIM28-209ENST00000597423 PPFIA4O75335 1185 aa16.98■□□□□ 0.31
TRIM28-209ENST00000597423 YWHABP31946 246 aaKnown RBP16.98■□□□□ 0.31
TRIM28-209ENST00000597423 ADCYAP1R1P41586 468 aa16.98■□□□□ 0.31
TRIM28-209ENST00000597423 STAT5BP51692 787 aa16.98■□□□□ 0.31
TRIM28-209ENST00000597423 SLC12A3P55017 1021 aa16.98■□□□□ 0.31
TRIM28-209ENST00000597423 PSMC6P62333 389 aa16.98■□□□□ 0.31
TRIM28-209ENST00000597423 ASIC1P78348 528 aa16.98■□□□□ 0.31
TRIM28-209ENST00000597423 CUL4BQ13620 913 aa16.98■□□□□ 0.31
TRIM28-209ENST00000597423 KCNB1Q14721 858 aa16.98■□□□□ 0.31
TRIM28-209ENST00000597423 CCL14Q16627 93 aa16.98■□□□□ 0.31
TRIM28-209ENST00000597423 XKR3Q5GH77 459 aa16.98■□□□□ 0.31
TRIM28-209ENST00000597423 CT47A1Q5JQC4 288 aaPredicted RBP16.98■□□□□ 0.31
TRIM28-209ENST00000597423 PLPPR4Q7Z2D5 763 aa16.98■□□□□ 0.31
TRIM28-209ENST00000597423 GPBP1Q86WP2 473 aa16.98■□□□□ 0.31
TRIM28-209ENST00000597423 CCDC65Q8IXS2 484 aa16.98■□□□□ 0.31
TRIM28-209ENST00000597423 MLKLQ8NB16 471 aa16.98■□□□□ 0.31
TRIM28-209ENST00000597423 PPTC7Q8NI37 304 aa16.98■□□□□ 0.31
TRIM28-209ENST00000597423 RAET1EQ8TD07 263 aa16.98■□□□□ 0.31
TRIM28-209ENST00000597423 AFAP1L1Q8TED9 768 aa16.98■□□□□ 0.31
TRIM28-209ENST00000597423 PIGOQ8TEQ8 1089 aa16.98■□□□□ 0.31
TRIM28-209ENST00000597423 FAM167AQ96KS9 214 aa16.98■□□□□ 0.31
TRIM28-209ENST00000597423 GPR20Q99678 358 aa16.98■□□□□ 0.31
TRIM28-209ENST00000597423 MTRQ99707 1265 aa16.98■□□□□ 0.31
TRIM28-209ENST00000597423 AP5M1Q9H0R1 490 aa16.98■□□□□ 0.31
TRIM28-209ENST00000597423 BLZF1Q9H2G9 400 aa16.98■□□□□ 0.31
TRIM28-209ENST00000597423 SMARCAD1Q9H4L7 1026 aa16.98■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 62.5 ms