RNA–Protein interactions for RNA: ENST00000596842.5

UPF1-204, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 2

Gene UPF1, Length 3,825 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-204ENST00000596842 ARMCX3Q9UH62 379 aaPredicted RBP16.71■□□□□ 0.27
UPF1-204ENST00000596842 GRID2IPA4D2P6 1211 aa16.7■□□□□ 0.26
UPF1-204ENST00000596842 HNRNPH3P31942 346 aaKnown RBP16.7■□□□□ 0.26
UPF1-204ENST00000596842 PSMC6P62333 389 aa16.7■□□□□ 0.26
UPF1-204ENST00000596842 IFFO1Q0D2I5 559 aa16.7■□□□□ 0.26
UPF1-204ENST00000596842 MKRN4PQ13434 485 aaPredicted RBP16.7■□□□□ 0.26
UPF1-204ENST00000596842 ALKBH5Q6P6C2 394 aaKnown RBP16.7■□□□□ 0.26
UPF1-204ENST00000596842 ANKS1AQ92625 1134 aa16.7■□□□□ 0.26
UPF1-204ENST00000596842 HAS1Q92839 578 aa16.7■□□□□ 0.26
UPF1-204ENST00000596842 MTMR4Q9NYA4 1195 aa16.7■□□□□ 0.26
UPF1-204ENST00000596842 GGA1Q9UJY5 639 aa16.7■□□□□ 0.26
UPF1-204ENST00000596842 GCNT3O95395 438 aa16.7■□□□□ 0.26
UPF1-204ENST00000596842 DNAJC19Q96DA6 116 aa16.7■□□□□ 0.26
UPF1-204ENST00000596842 LRRC27Q9C0I9 530 aa16.7■□□□□ 0.26
UPF1-204ENST00000596842 GFPT2O94808 682 aa16.7■□□□□ 0.26
UPF1-204ENST00000596842 ITGA4P13612 1032 aa16.7■□□□□ 0.26
UPF1-204ENST00000596842 FXR2P51116 673 aaKnown RBP eCLIP16.7■□□□□ 0.267e-7■■■□□ 15.4
UPF1-204ENST00000596842 HDLBPQ00341 1268 aaKnown RBP16.7■□□□□ 0.26
UPF1-204ENST00000596842 GRAPQ13588 217 aa16.7■□□□□ 0.26
UPF1-204ENST00000596842 NAB2Q15742 525 aa16.7■□□□□ 0.26
UPF1-204ENST00000596842 MCTP2Q6DN12 878 aa16.7■□□□□ 0.26
UPF1-204ENST00000596842 KSR1Q8IVT5 923 aa16.7■□□□□ 0.26
UPF1-204ENST00000596842 GRAPLQ8TC17 118 aaPredicted RBP16.7■□□□□ 0.26
UPF1-204ENST00000596842 SCFD1Q8WVM8 642 aa16.7■□□□□ 0.26
UPF1-204ENST00000596842 PCDHA1Q9Y5I3 950 aa16.7■□□□□ 0.26
UPF1-204ENST00000596842 CASZ1Q86V15 1759 aa16.7■□□□□ 0.26
UPF1-204ENST00000596842 SSU72P8A0A1W2PR75 194 aa16.69■□□□□ 0.26
UPF1-204ENST00000596842 TMEM110-MUSTN1A8MSY1 372 aa16.69■□□□□ 0.26
UPF1-204ENST00000596842 RSPH10B2B2RC85 870 aa16.69■□□□□ 0.26
UPF1-204ENST00000596842 RSPH10BP0C881 870 aa16.69■□□□□ 0.26
UPF1-204ENST00000596842 TM4SF1P30408 202 aa16.69■□□□□ 0.26
UPF1-204ENST00000596842 ZNF76P36508 570 aa16.69■□□□□ 0.26
UPF1-204ENST00000596842 EXOC3L4Q17RC7 722 aa16.69■□□□□ 0.26
UPF1-204ENST00000596842 DOK7Q18PE1 504 aa16.69■□□□□ 0.26
UPF1-204ENST00000596842 SLC10A5Q5PT55 438 aa16.69■□□□□ 0.26
UPF1-204ENST00000596842 CCDC113Q9H0I3 377 aa16.69■□□□□ 0.26
UPF1-204ENST00000596842 GCOM1H8Y6P7 765 aaPredicted RBP16.69■□□□□ 0.26
UPF1-204ENST00000596842 DAPK3O43293 454 aa16.69■□□□□ 0.26
UPF1-204ENST00000596842 PPP1R11O60927 126 aaPredicted RBP16.69■□□□□ 0.26
UPF1-204ENST00000596842 MYZAPP0CAP1 466 aa16.69■□□□□ 0.26
UPF1-204ENST00000596842 MAEAQ7L5Y9 396 aa16.69■□□□□ 0.26
UPF1-204ENST00000596842 SFR1Q86XK3 245 aa16.69■□□□□ 0.26
UPF1-204ENST00000596842 CALR3Q96L12 384 aaKnown RBP16.69■□□□□ 0.26
UPF1-204ENST00000596842 SCLT1Q96NL6 688 aa16.69■□□□□ 0.26
UPF1-204ENST00000596842 YY1AP1Q9H869 796 aa16.69■□□□□ 0.26
UPF1-204ENST00000596842 PRLRP16471 622 aa16.69■□□□□ 0.26
UPF1-204ENST00000596842 CASP4P49662 377 aa16.69■□□□□ 0.26
UPF1-204ENST00000596842 ZNF571Q7Z3V5 609 aaPredicted RBP16.69■□□□□ 0.26
UPF1-204ENST00000596842 RNF10Q8N5U6 811 aaKnown RBP16.69■□□□□ 0.26
UPF1-204ENST00000596842 NGLY1Q96IV0 654 aa16.69■□□□□ 0.26
UPF1-204ENST00000596842 ZNF219Q9P2Y4 722 aaPredicted RBP16.69■□□□□ 0.26
UPF1-204ENST00000596842 CHORDC1Q9UHD1 332 aaPredicted RBP16.69■□□□□ 0.26
UPF1-204ENST00000596842 TSKSQ9UJT2 592 aa16.69■□□□□ 0.26
UPF1-204ENST00000596842 XRCC5P13010 732 aaKnown RBP16.68■□□□□ 0.26
UPF1-204ENST00000596842 KCNA1Q09470 495 aa16.68■□□□□ 0.26
UPF1-204ENST00000596842 CDCA7Q9BWT1 371 aaPredicted RBP16.68■□□□□ 0.26
UPF1-204ENST00000596842 LEMD3Q9Y2U8 911 aa16.68■□□□□ 0.26
UPF1-204ENST00000596842 MED24O75448 989 aa16.68■□□□□ 0.26
UPF1-204ENST00000596842 HOXA13P31271 388 aaPredicted RBP16.68■□□□□ 0.26
UPF1-204ENST00000596842 ERVK-9P63128 1117 aa16.68■□□□□ 0.26
UPF1-204ENST00000596842 ARHGAP44Q17R89 818 aa16.68■□□□□ 0.26
UPF1-204ENST00000596842 ASTE1Q2TB18 679 aaPredicted RBP16.68■□□□□ 0.26
UPF1-204ENST00000596842 PIGOQ8TEQ8 1089 aa16.68■□□□□ 0.26
UPF1-204ENST00000596842 IQCDQ96DY2 449 aa16.68■□□□□ 0.26
UPF1-204ENST00000596842 SART1O43290 800 aaKnown RBP16.68■□□□□ 0.26
UPF1-204ENST00000596842 SHOX2O60902 331 aaPredicted RBP16.68■□□□□ 0.26
UPF1-204ENST00000596842 MYBP10242 640 aa16.68■□□□□ 0.26
UPF1-204ENST00000596842 UBXN2AP68543 259 aa16.68■□□□□ 0.26
UPF1-204ENST00000596842 ZNF211Q13398 564 aaPredicted RBP16.68■□□□□ 0.26
UPF1-204ENST00000596842 KRT71Q3SY84 523 aa16.68■□□□□ 0.26
UPF1-204ENST00000596842 TBC1D10BQ4KMP7 808 aaPredicted RBP16.68■□□□□ 0.26
UPF1-204ENST00000596842 KIRREL3Q8IZU9 778 aa16.68■□□□□ 0.26
UPF1-204ENST00000596842 USP38Q8NB14 1042 aa16.68■□□□□ 0.26
UPF1-204ENST00000596842 NOVA2Q9UNW9 492 aaKnown RBP16.68■□□□□ 0.26
UPF1-204ENST00000596842 USP40Q9NVE5 1235 aa16.67■□□□□ 0.26
UPF1-204ENST00000596842 ATP8A1Q9Y2Q0 1164 aa16.67■□□□□ 0.26
UPF1-204ENST00000596842 A0A1B0GUL6 1792 aa16.67■□□□□ 0.26
UPF1-204ENST00000596842 PNMA6FA0A0J9YX94 578 aa16.67■□□□□ 0.26
UPF1-204ENST00000596842 GOLGA6L7A0A1B0GV03 622 aa16.67■□□□□ 0.26
UPF1-204ENST00000596842 EDIL3O43854 480 aa16.67■□□□□ 0.26
UPF1-204ENST00000596842 RPS6KA4O75676 772 aa16.67■□□□□ 0.26
UPF1-204ENST00000596842 FLT3P36888 993 aa16.67■□□□□ 0.26
UPF1-204ENST00000596842 TRAPPC3LQ5T215 181 aa16.67■□□□□ 0.26
UPF1-204ENST00000596842 FAM196AQ6ZSG2 479 aa16.67■□□□□ 0.26
UPF1-204ENST00000596842 BHMT2Q9H2M3 363 aa16.67■□□□□ 0.26
UPF1-204ENST00000596842 RIOX1Q9H6W3 641 aa16.67■□□□□ 0.26
UPF1-204ENST00000596842 TTI1O43156 1089 aa16.67■□□□□ 0.26
UPF1-204ENST00000596842 PJA2O43164 708 aa16.67■□□□□ 0.26
UPF1-204ENST00000596842 RPSAP08865 295 aaKnown RBP16.67■□□□□ 0.26
UPF1-204ENST00000596842 UCHL3P15374 230 aa16.67■□□□□ 0.26
UPF1-204ENST00000596842 GBP2P32456 591 aaPredicted RBP16.67■□□□□ 0.26
UPF1-204ENST00000596842 PPP4CP60510 307 aa16.67■□□□□ 0.26
UPF1-204ENST00000596842 PDIA5Q14554 519 aa16.67■□□□□ 0.26
UPF1-204ENST00000596842 MEI1Q5TIA1 1274 aa16.67■□□□□ 0.26
UPF1-204ENST00000596842 B4GALNT4Q76KP1 1039 aa16.67■□□□□ 0.26
UPF1-204ENST00000596842 ATP6V1G3Q96LB4 118 aa16.67■□□□□ 0.26
UPF1-204ENST00000596842 CCT8L2Q96SF2 557 aa16.67■□□□□ 0.26
UPF1-204ENST00000596842 SH3GL2Q99962 352 aa16.67■□□□□ 0.26
UPF1-204ENST00000596842 GCNT4Q9P109 453 aa16.67■□□□□ 0.26
UPF1-204ENST00000596842 FBXL5Q9UKA1 691 aa16.67■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 54.4 ms