RNA–Protein interactions for RNA: ENST00000596332.1

LIG1-210, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 584 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-210ENST00000596332 TECP42680 631 aa11.92□□□□□ -0.5
LIG1-210ENST00000596332 PSEN2P49810 448 aa11.92□□□□□ -0.5
LIG1-210ENST00000596332 DNM1Q05193 864 aaKnown RBP11.92□□□□□ -0.5
LIG1-210ENST00000596332 ITGA7Q13683 1181 aa11.92□□□□□ -0.5
LIG1-210ENST00000596332 PLCB4Q15147 1175 aa11.92□□□□□ -0.5
LIG1-210ENST00000596332 EPHA7Q15375 998 aa11.92□□□□□ -0.5
LIG1-210ENST00000596332 UTP14CQ5TAP6 766 aaKnown RBP11.92□□□□□ -0.5
LIG1-210ENST00000596332 USP49Q70CQ1 688 aa11.92□□□□□ -0.5
LIG1-210ENST00000596332 PLPPR4Q7Z2D5 763 aa11.92□□□□□ -0.5
LIG1-210ENST00000596332 NECAB2Q7Z6G3 386 aa11.92□□□□□ -0.5
LIG1-210ENST00000596332 SESTD1Q86VW0 696 aa11.92□□□□□ -0.5
LIG1-210ENST00000596332 SMAP1Q8IYB5 467 aaPredicted RBP11.92□□□□□ -0.5
LIG1-210ENST00000596332 SLFN12Q8IYM2 578 aa11.92□□□□□ -0.5
LIG1-210ENST00000596332 LRRC15Q8TF66 581 aa11.92□□□□□ -0.5
LIG1-210ENST00000596332 IPO9Q96P70 1041 aaKnown RBP11.92□□□□□ -0.5
LIG1-210ENST00000596332 TNRC18O15417 2968 aaPredicted RBP11.92□□□□□ -0.5
LIG1-210ENST00000596332 WDR64B1ANS9 1081 aa11.91□□□□□ -0.5
LIG1-210ENST00000596332 ARVCFO00192 962 aa11.91□□□□□ -0.5
LIG1-210ENST00000596332 LAD1O00515 517 aa11.91□□□□□ -0.5
LIG1-210ENST00000596332 CHMP2AO43633 222 aa11.91□□□□□ -0.5
LIG1-210ENST00000596332 MED24O75448 989 aa11.91□□□□□ -0.5
LIG1-210ENST00000596332 SFNP31947 248 aa11.91□□□□□ -0.5
LIG1-210ENST00000596332 STAT5BP51692 787 aa11.91□□□□□ -0.5
LIG1-210ENST00000596332 JAK3P52333 1124 aa11.91□□□□□ -0.5
LIG1-210ENST00000596332 ATN1P54259 1190 aaPredicted RBP11.91□□□□□ -0.5
LIG1-210ENST00000596332 ZNF200P98182 395 aaPredicted RBP11.91□□□□□ -0.5
LIG1-210ENST00000596332 PDIA5Q14554 519 aa11.91□□□□□ -0.5
LIG1-210ENST00000596332 MFSD10Q14728 455 aa11.91□□□□□ -0.5
LIG1-210ENST00000596332 TARBP2Q15633 366 aaKnown RBP11.91□□□□□ -0.5
LIG1-210ENST00000596332 KIAA0753Q2KHM9 967 aa11.91□□□□□ -0.5
LIG1-210ENST00000596332 FOXD4L6Q3SYB3 417 aaPredicted RBP11.91□□□□□ -0.5
LIG1-210ENST00000596332 AXDND1Q5T1B0 1012 aaPredicted RBP11.91□□□□□ -0.5
LIG1-210ENST00000596332 ARL6IP4Q66PJ3 421 aaKnown RBP11.91□□□□□ -0.5
LIG1-210ENST00000596332 FOXD4L3Q6VB84 417 aaPredicted RBP11.91□□□□□ -0.5
LIG1-210ENST00000596332 ANKRD33Q7Z3H0 272 aa11.91□□□□□ -0.5
LIG1-210ENST00000596332 ZNF579Q8NAF0 562 aaKnown RBP11.91□□□□□ -0.5
LIG1-210ENST00000596332 RDM1Q8NG50 284 aa11.91□□□□□ -0.5
LIG1-210ENST00000596332 EIF2AK1Q9BQI3 630 aaKnown RBP11.91□□□□□ -0.5
LIG1-210ENST00000596332 STARD7Q9NQZ5 370 aa11.91□□□□□ -0.5
LIG1-210ENST00000596332 HDAC6Q9UBN7 1215 aa11.91□□□□□ -0.5
LIG1-210ENST00000596332 GABBR1Q9UBS5 961 aa11.91□□□□□ -0.5
LIG1-210ENST00000596332 DAXXQ9UER7 740 aaPredicted RBP11.91□□□□□ -0.5
LIG1-210ENST00000596332 RCOR1Q9UKL0 485 aa11.91□□□□□ -0.5
LIG1-210ENST00000596332 ALPK3Q96L96 1907 aa11.91□□□□□ -0.5
LIG1-210ENST00000596332 A0A087WWV3 80 aa11.9□□□□□ -0.5
LIG1-210ENST00000596332 TMEM150BA6NC51 233 aa11.9□□□□□ -0.5
LIG1-210ENST00000596332 NOP56O00567 594 aaKnown RBP11.9□□□□□ -0.5
LIG1-210ENST00000596332 ZEB2O60315 1214 aa11.9□□□□□ -0.5
LIG1-210ENST00000596332 BAG4O95429 457 aaKnown RBP11.9□□□□□ -0.5
LIG1-210ENST00000596332 PSAPP07602 524 aa11.9□□□□□ -0.5
LIG1-210ENST00000596332 MARCKSP29966 332 aaPredicted RBP11.9□□□□□ -0.5
LIG1-210ENST00000596332 CEBPZQ03701 1054 aaKnown RBP11.9□□□□□ -0.5
LIG1-210ENST00000596332 FAAP100Q0VG06 881 aa11.9□□□□□ -0.5
LIG1-210ENST00000596332 GDF6Q6KF10 455 aaPredicted RBP11.9□□□□□ -0.5
LIG1-210ENST00000596332 MIS18BP1Q6P0N0 1132 aa11.9□□□□□ -0.5
LIG1-210ENST00000596332 ANO5Q75V66 913 aa11.9□□□□□ -0.5
LIG1-210ENST00000596332 MIER3Q7Z3K6 550 aa11.9□□□□□ -0.5
LIG1-210ENST00000596332 CATSPER3Q86XQ3 398 aa11.9□□□□□ -0.5
LIG1-210ENST00000596332 FAM126BQ8IXS8 530 aa11.9□□□□□ -0.5
LIG1-210ENST00000596332 BANK1Q8NDB2 785 aa11.9□□□□□ -0.5
LIG1-210ENST00000596332 WNT8BQ93098 351 aa11.9□□□□□ -0.5
LIG1-210ENST00000596332 VWCEQ96DN2 955 aa11.9□□□□□ -0.5
LIG1-210ENST00000596332 ZBTB10Q96DT7 871 aa11.9□□□□□ -0.5
LIG1-210ENST00000596332 DYDC2Q96IM9 177 aa11.9□□□□□ -0.5
LIG1-210ENST00000596332 GLT1D1Q96MS3 346 aa11.9□□□□□ -0.5
LIG1-210ENST00000596332 SMARCAD1Q9H4L7 1026 aa11.9□□□□□ -0.5
LIG1-210ENST00000596332 ZNF302Q9NR11 478 aa11.9□□□□□ -0.5
LIG1-210ENST00000596332 SRPRBQ9Y5M8 271 aaKnown RBP11.9□□□□□ -0.5
LIG1-210ENST00000596332 A0A0U1RQG5 324 aaPredicted RBP11.89□□□□□ -0.51
LIG1-210ENST00000596332 B4GALT4O60513 344 aa11.89□□□□□ -0.51
LIG1-210ENST00000596332 LYPLA2O95372 231 aa11.89□□□□□ -0.51
LIG1-210ENST00000596332 P4HBP07237 508 aaKnown RBP11.89□□□□□ -0.51
LIG1-210ENST00000596332 SMIM10L2AP0DMW4 78 aa11.89□□□□□ -0.51
LIG1-210ENST00000596332 SMIM10L2BP0DMW5 78 aa11.89□□□□□ -0.51
LIG1-210ENST00000596332 INSRRP14616 1297 aa11.89□□□□□ -0.51
LIG1-210ENST00000596332 ITGB8P26012 769 aa11.89□□□□□ -0.51
LIG1-210ENST00000596332 TLE2Q04725 743 aa11.89□□□□□ -0.51
LIG1-210ENST00000596332 CTTNQ14247 550 aaKnown RBP11.89□□□□□ -0.51
LIG1-210ENST00000596332 TRIM71Q2Q1W2 868 aaKnown RBP11.89□□□□□ -0.51
LIG1-210ENST00000596332 TRIM60Q495X7 471 aa11.89□□□□□ -0.51
LIG1-210ENST00000596332 BRDTQ58F21 947 aaPredicted RBP11.89□□□□□ -0.51
LIG1-210ENST00000596332 NCAPH2Q6IBW4 605 aa11.89□□□□□ -0.51
LIG1-210ENST00000596332 NFRKBQ6P4R8 1299 aa11.89□□□□□ -0.51
LIG1-210ENST00000596332 KCNK18Q7Z418 384 aa11.89□□□□□ -0.51
LIG1-210ENST00000596332 SH3RF1Q7Z6J0 888 aa11.89□□□□□ -0.51
LIG1-210ENST00000596332 DHX38Q92620 1227 aaKnown RBP11.89□□□□□ -0.51
LIG1-210ENST00000596332 TOX2Q96NM4 488 aa11.89□□□□□ -0.51
LIG1-210ENST00000596332 CLIC6Q96NY7 704 aa11.89□□□□□ -0.51
LIG1-210ENST00000596332 PNMA5Q96PV4 448 aa11.89□□□□□ -0.51
LIG1-210ENST00000596332 POLR3CQ9BUI4 534 aaPredicted RBP11.89□□□□□ -0.51
LIG1-210ENST00000596332 TRPV6Q9H1D0 765 aa11.89□□□□□ -0.51
LIG1-210ENST00000596332 TRMT13Q9NUP7 481 aaKnown RBP11.89□□□□□ -0.51
LIG1-210ENST00000596332 SETD4Q9NVD3 440 aa11.89□□□□□ -0.51
LIG1-210ENST00000596332 GTF2IRD1Q9UHL9 959 aa11.89□□□□□ -0.51
LIG1-210ENST00000596332 CIZ1Q9ULV3 898 aaPredicted RBP11.89□□□□□ -0.51
LIG1-210ENST00000596332 WDR81Q562E7 1941 aa11.88□□□□□ -0.51
LIG1-210ENST00000596332 MYH15Q9Y2K3 1946 aa11.88□□□□□ -0.51
LIG1-210ENST00000596332 MBLAC1A4D2B0 266 aaPredicted RBP11.88□□□□□ -0.51
LIG1-210ENST00000596332 VWA3AA6NCI4 1184 aa11.88□□□□□ -0.51
LIG1-210ENST00000596332 TRIM43BA6NCK2 446 aa11.88□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms