RNA–Protein interactions for RNA: ENST00000588059.5

VPS4B-202, Transcript of vacuolar protein sorting 4 homolog B, humanhuman

TSL 5

Gene VPS4B, Length 1,252 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4B-202ENST00000588059 PIGSQ96S52 555 aa12.77□□□□□ -0.37
VPS4B-202ENST00000588059 RTEL1Q9NZ71 1219 aa12.77□□□□□ -0.37
VPS4B-202ENST00000588059 BARX2Q9UMQ3 279 aaPredicted RBP12.77□□□□□ -0.37
VPS4B-202ENST00000588059 MBLAC1A4D2B0 266 aaPredicted RBP12.76□□□□□ -0.37
VPS4B-202ENST00000588059 SIGLEC14Q08ET2 396 aa12.76□□□□□ -0.37
VPS4B-202ENST00000588059 TRAF1Q13077 416 aa12.76□□□□□ -0.37
VPS4B-202ENST00000588059 PPFIA1Q13136 1202 aa12.76□□□□□ -0.37
VPS4B-202ENST00000588059 POF1BQ8WVV4 589 aa12.76□□□□□ -0.37
VPS4B-202ENST00000588059 ASIC4Q96FT7 647 aa12.76□□□□□ -0.37
VPS4B-202ENST00000588059 SENP7Q9BQF6 1050 aa12.76□□□□□ -0.37
VPS4B-202ENST00000588059 PHF7Q9BWX1 381 aaPredicted RBP12.76□□□□□ -0.37
VPS4B-202ENST00000588059 KRT23Q9C075 422 aa12.76□□□□□ -0.37
VPS4B-202ENST00000588059 RIOX1Q9H6W3 641 aa12.76□□□□□ -0.37
VPS4B-202ENST00000588059 AGO3Q9H9G7 860 aaKnown RBP12.76□□□□□ -0.37
VPS4B-202ENST00000588059 TUBE1Q9UJT0 475 aa12.76□□□□□ -0.37
VPS4B-202ENST00000588059 PCDHGC5Q9Y5F6 944 aa12.76□□□□□ -0.37
VPS4B-202ENST00000588059 CDY2AQ9Y6F7 541 aa12.76□□□□□ -0.37
VPS4B-202ENST00000588059 FNDC1Q4ZHG4 1894 aaPredicted RBP12.76□□□□□ -0.37
VPS4B-202ENST00000588059 CYTH3O43739 400 aa12.75□□□□□ -0.37
VPS4B-202ENST00000588059 TCF7P36402 384 aaPredicted RBP12.75□□□□□ -0.37
VPS4B-202ENST00000588059 MRPS6P82932 125 aaKnown RBP12.75□□□□□ -0.37
VPS4B-202ENST00000588059 GRM4Q14833 912 aa12.75□□□□□ -0.37
VPS4B-202ENST00000588059 GRIK4Q16099 956 aa12.75□□□□□ -0.37
VPS4B-202ENST00000588059 IMMTQ16891 758 aaKnown RBP12.75□□□□□ -0.37
VPS4B-202ENST00000588059 PAN2Q504Q3 1202 aaKnown RBP12.75□□□□□ -0.37
VPS4B-202ENST00000588059 CWC27Q6UX04 472 aaKnown RBP12.75□□□□□ -0.37
VPS4B-202ENST00000588059 RBM23Q86U06 439 aaKnown RBP12.75□□□□□ -0.37
VPS4B-202ENST00000588059 RSPH3Q86UC2 560 aa12.75□□□□□ -0.37
VPS4B-202ENST00000588059 RTN4RL1Q86UN2 441 aaPredicted RBP12.75□□□□□ -0.37
VPS4B-202ENST00000588059 NPAS4Q8IUM7 802 aa12.75□□□□□ -0.37
VPS4B-202ENST00000588059 DNAJB3Q8WWF6 145 aa12.75□□□□□ -0.37
VPS4B-202ENST00000588059 DSCC1Q9BVC3 393 aa12.75□□□□□ -0.37
VPS4B-202ENST00000588059 CNNM2Q9H8M5 875 aa12.75□□□□□ -0.37
VPS4B-202ENST00000588059 ZFHX2Q9C0A1 2572 aaPredicted RBP12.74□□□□□ -0.37
VPS4B-202ENST00000588059 PNMA6FA0A0J9YX94 578 aa12.74□□□□□ -0.37
VPS4B-202ENST00000588059 MARK3P27448 753 aa12.74□□□□□ -0.37
VPS4B-202ENST00000588059 CD52P31358 61 aa12.74□□□□□ -0.37
VPS4B-202ENST00000588059 GATMP50440 423 aa12.74□□□□□ -0.37
VPS4B-202ENST00000588059 RBM10P98175 930 aaKnown RBP12.74□□□□□ -0.37
VPS4B-202ENST00000588059 MARCH8Q5T0T0 291 aa12.74□□□□□ -0.37
VPS4B-202ENST00000588059 PCNX4Q63HM2 1172 aa12.74□□□□□ -0.37
VPS4B-202ENST00000588059 CYB5R4Q7L1T6 521 aa12.74□□□□□ -0.37
VPS4B-202ENST00000588059 VN1R2Q8NFZ6 395 aa12.74□□□□□ -0.37
VPS4B-202ENST00000588059 SUSD6Q92537 303 aa12.74□□□□□ -0.37
VPS4B-202ENST00000588059 RPGRIP1Q96KN7 1286 aa12.74□□□□□ -0.37
VPS4B-202ENST00000588059 LNPKQ9C0E8 428 aa12.74□□□□□ -0.37
VPS4B-202ENST00000588059 ATF7P17544 494 aaPredicted RBP12.73□□□□□ -0.37
VPS4B-202ENST00000588059 AVPR2P30518 371 aa12.73□□□□□ -0.37
VPS4B-202ENST00000588059 HDAC1Q13547 482 aaPredicted RBP12.73□□□□□ -0.37
VPS4B-202ENST00000588059 PTPN21Q16825 1174 aa12.73□□□□□ -0.37
VPS4B-202ENST00000588059 ATP8B4Q8TF62 1192 aa12.73□□□□□ -0.37
VPS4B-202ENST00000588059 ZBTB10Q96DT7 871 aa12.73□□□□□ -0.37
VPS4B-202ENST00000588059 FTHL17Q9BXU8 183 aa12.73□□□□□ -0.37
VPS4B-202ENST00000588059 TLE6Q9H808 572 aa12.73□□□□□ -0.37
VPS4B-202ENST00000588059 DIAPH3Q9NSV4 1193 aa12.73□□□□□ -0.37
VPS4B-202ENST00000588059 ERAP1Q9NZ08 941 aa12.73□□□□□ -0.37
VPS4B-202ENST00000588059 PTPRZ1P23471 2315 aaPredicted RBP12.72□□□□□ -0.37
VPS4B-202ENST00000588059 SPTBN4Q9H254 2564 aa12.72□□□□□ -0.37
VPS4B-202ENST00000588059 GSTTP1A0A1W2PQM5 241 aa12.72□□□□□ -0.37
VPS4B-202ENST00000588059 ATP9AO75110 1047 aa12.72□□□□□ -0.37
VPS4B-202ENST00000588059 STAG3L1P0CL83 205 aa12.72□□□□□ -0.37
VPS4B-202ENST00000588059 SCG2P13521 617 aa12.72□□□□□ -0.37
VPS4B-202ENST00000588059 KCNA2P16389 499 aa12.72□□□□□ -0.37
VPS4B-202ENST00000588059 IGBP1P78318 339 aa12.72□□□□□ -0.37
VPS4B-202ENST00000588059 XRRA1Q6P2D8 792 aa12.72□□□□□ -0.37
VPS4B-202ENST00000588059 NLRX1Q86UT6 975 aa12.72□□□□□ -0.37
VPS4B-202ENST00000588059 GIMAP8Q8ND71 665 aaPredicted RBP12.72□□□□□ -0.37
VPS4B-202ENST00000588059 ATOH1Q92858 354 aaPredicted RBP12.72□□□□□ -0.37
VPS4B-202ENST00000588059 FAM49AQ9H0Q0 323 aaPredicted RBP12.72□□□□□ -0.37
VPS4B-202ENST00000588059 IRF2BPLQ9H1B7 796 aa12.72□□□□□ -0.37
VPS4B-202ENST00000588059 SENP2Q9HC62 589 aa12.72□□□□□ -0.37
VPS4B-202ENST00000588059 PADI3Q9ULW8 664 aa12.72□□□□□ -0.37
VPS4B-202ENST00000588059 TRPV2Q9Y5S1 764 aa12.72□□□□□ -0.37
VPS4B-202ENST00000588059 SQORQ9Y6N5 450 aa12.72□□□□□ -0.37
VPS4B-202ENST00000588059 IGSF9BQ9UPX0 1349 aa12.71□□□□□ -0.37
VPS4B-202ENST00000588059 MYO15AQ9UKN7 3530 aa12.71□□□□□ -0.37
VPS4B-202ENST00000588059 PER2O15055 1255 aa12.71□□□□□ -0.37
VPS4B-202ENST00000588059 PPFIA3O75145 1194 aa12.71□□□□□ -0.37
VPS4B-202ENST00000588059 PDGFBP01127 241 aaPredicted RBP12.71□□□□□ -0.37
VPS4B-202ENST00000588059 RPLP2P05387 115 aaKnown RBP12.71□□□□□ -0.37
VPS4B-202ENST00000588059 UBE3AQ05086 875 aa12.71□□□□□ -0.37
VPS4B-202ENST00000588059 TROAPQ12815 778 aa12.71□□□□□ -0.37
VPS4B-202ENST00000588059 DUSP6Q16828 381 aa12.71□□□□□ -0.37
VPS4B-202ENST00000588059 IER5Q5VY09 327 aa12.71□□□□□ -0.37
VPS4B-202ENST00000588059 USP17L6PQ6QN14 398 aa12.71□□□□□ -0.37
VPS4B-202ENST00000588059 EXOC6Q8TAG9 804 aa12.71□□□□□ -0.37
VPS4B-202ENST00000588059 SMARCC2Q8TAQ2 1214 aa12.71□□□□□ -0.37
VPS4B-202ENST00000588059 PIBF1Q8WXW3 757 aa12.71□□□□□ -0.37
VPS4B-202ENST00000588059 SEPT1Q8WYJ6 367 aa12.71□□□□□ -0.37
VPS4B-202ENST00000588059 GLG1Q92896 1179 aa12.71□□□□□ -0.37
VPS4B-202ENST00000588059 GPRASP2Q96D09 838 aa12.71□□□□□ -0.37
VPS4B-202ENST00000588059 TMX1Q9H3N1 280 aa12.71□□□□□ -0.37
VPS4B-202ENST00000588059 TLR9Q9NR96 1032 aa12.71□□□□□ -0.37
VPS4B-202ENST00000588059 FAM186AA6NE01 2351 aa12.7□□□□□ -0.38
VPS4B-202ENST00000588059 MYO10Q9HD67 2058 aa12.7□□□□□ -0.38
VPS4B-202ENST00000588059 FSD2A1L4K1 749 aa12.7□□□□□ -0.38
VPS4B-202ENST00000588059 PROB1E7EW31 1015 aa12.7□□□□□ -0.38
VPS4B-202ENST00000588059 H0Y858 1186 aa12.7□□□□□ -0.38
VPS4B-202ENST00000588059 PIK3CDO00329 1044 aa12.7□□□□□ -0.38
VPS4B-202ENST00000588059 MEIS2O14770 477 aa12.7□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 180.4 ms