RNA–Protein interactions for RNA: ENST00000579558.5

SHMT1-206, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,077 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-206ENST00000579558 PLPPR4Q7Z2D5 763 aa27.11■■□□□ 1.93
SHMT1-206ENST00000579558 WASF1Q92558 559 aa27.11■■□□□ 1.93
SHMT1-206ENST00000579558 GUCD1Q96NT3 240 aa27.11■■□□□ 1.93
SHMT1-206ENST00000579558 PHF20Q9BVI0 1012 aa27.11■■□□□ 1.93
SHMT1-206ENST00000579558 TCEAL9Q9UHQ7 104 aa27.11■■□□□ 1.93
SHMT1-206ENST00000579558 MSRAQ9UJ68 235 aa27.11■■□□□ 1.93
SHMT1-206ENST00000579558 BACH1O14867 736 aa27.1■■□□□ 1.93
SHMT1-206ENST00000579558 CAND2O75155 1236 aa27.1■■□□□ 1.93
SHMT1-206ENST00000579558 BAIAP3O94812 1187 aa27.1■■□□□ 1.93
SHMT1-206ENST00000579558 ATP2A2P16615 1042 aaKnown RBP27.1■■□□□ 1.93
SHMT1-206ENST00000579558 MBTPS1Q14703 1052 aa27.1■■□□□ 1.93
SHMT1-206ENST00000579558 CNKSR3Q6P9H4 555 aa27.1■■□□□ 1.93
SHMT1-206ENST00000579558 ABHD15Q6UXT9 468 aa27.1■■□□□ 1.93
SHMT1-206ENST00000579558 LENG9Q96B70 501 aa27.1■■□□□ 1.93
SHMT1-206ENST00000579558 TRPC6Q9Y210 931 aa27.1■■□□□ 1.93
SHMT1-206ENST00000579558 GBF1Q92538 1859 aa27.09■■□□□ 1.93
SHMT1-206ENST00000579558 CTSHP09668 335 aa27.09■■□□□ 1.93
SHMT1-206ENST00000579558 IGBP1P78318 339 aa27.09■■□□□ 1.93
SHMT1-206ENST00000579558 PLCB4Q15147 1175 aa27.09■■□□□ 1.93
SHMT1-206ENST00000579558 NONOQ15233 471 aaKnown RBP eCLIP27.09■■□□□ 1.93
SHMT1-206ENST00000579558 FAM160B1Q5W0V3 765 aa27.09■■□□□ 1.93
SHMT1-206ENST00000579558 MIS18BP1Q6P0N0 1132 aa27.09■■□□□ 1.93
SHMT1-206ENST00000579558 KRT25Q7Z3Z0 450 aa27.09■■□□□ 1.93
SHMT1-206ENST00000579558 TNPO1Q92973 898 aaKnown RBP27.09■■□□□ 1.93
SHMT1-206ENST00000579558 GJB4Q9NTQ9 266 aa27.09■■□□□ 1.93
SHMT1-206ENST00000579558 TUBE1Q9UJT0 475 aa27.09■■□□□ 1.93
SHMT1-206ENST00000579558 IGKV6D-21A0A0A0MT36 114 aa27.08■■□□□ 1.93
SHMT1-206ENST00000579558 INSRRP14616 1297 aa27.08■■□□□ 1.93
SHMT1-206ENST00000579558 ZNF746Q6NUN9 644 aaPredicted RBP27.08■■□□□ 1.93
SHMT1-206ENST00000579558 RUFY4Q6ZNE9 571 aa27.08■■□□□ 1.93
SHMT1-206ENST00000579558 NSUN7Q8NE18 718 aaKnown RBP27.08■■□□□ 1.93
SHMT1-206ENST00000579558 SLC9A7Q96T83 725 aa27.08■■□□□ 1.93
SHMT1-206ENST00000579558 STXBP5LQ9Y2K9 1186 aa27.08■■□□□ 1.93
SHMT1-206ENST00000579558 RRN3P2A6NIE6 340 aa27.07■■□□□ 1.92
SHMT1-206ENST00000579558 MSH4O15457 936 aa27.07■■□□□ 1.92
SHMT1-206ENST00000579558 FDPSP14324 419 aaKnown RBP27.07■■□□□ 1.92
SHMT1-206ENST00000579558 KCNJ6P48051 423 aa27.07■■□□□ 1.92
SHMT1-206ENST00000579558 SLC26A2P50443 739 aa27.07■■□□□ 1.92
SHMT1-206ENST00000579558 RABGGTBP53611 331 aa27.07■■□□□ 1.92
SHMT1-206ENST00000579558 KRT76Q01546 638 aa27.07■■□□□ 1.92
SHMT1-206ENST00000579558 TAF2Q6P1X5 1199 aa27.07■■□□□ 1.92
SHMT1-206ENST00000579558 CCDC60Q8IWA6 550 aaPredicted RBP27.07■■□□□ 1.92
SHMT1-206ENST00000579558 ZNF302Q9NR11 478 aa27.07■■□□□ 1.92
SHMT1-206ENST00000579558 CCDC194A0A1B0GVG4 234 aa27.06■■□□□ 1.92
SHMT1-206ENST00000579558 POTEB3A0JP26 581 aa27.06■■□□□ 1.92
SHMT1-206ENST00000579558 MBLAC1A4D2B0 266 aaPredicted RBP27.06■■□□□ 1.92
SHMT1-206ENST00000579558 TDP2O95551 362 aa27.06■■□□□ 1.92
SHMT1-206ENST00000579558 INF2Q27J81 1249 aa27.06■■□□□ 1.92
SHMT1-206ENST00000579558 TCTN1Q2MV58 587 aa27.06■■□□□ 1.92
SHMT1-206ENST00000579558 MARCH8Q5T0T0 291 aa27.06■■□□□ 1.92
SHMT1-206ENST00000579558 POTEBQ6S5H4 581 aa27.06■■□□□ 1.92
SHMT1-206ENST00000579558 SMAP1Q8IYB5 467 aaPredicted RBP27.06■■□□□ 1.92
SHMT1-206ENST00000579558 CDX2Q99626 313 aaPredicted RBP27.06■■□□□ 1.92
SHMT1-206ENST00000579558 NKX2-4Q9H2Z4 354 aa27.06■■□□□ 1.92
SHMT1-206ENST00000579558 ZNF576Q9H609 170 aa27.06■■□□□ 1.92
SHMT1-206ENST00000579558 LIMCH1Q9UPQ0 1083 aa27.06■■□□□ 1.92
SHMT1-206ENST00000579558 YBX2Q9Y2T7 364 aaKnown RBP27.06■■□□□ 1.92
SHMT1-206ENST00000579558 Q4G0T1 1027 aa27.05■■□□□ 1.92
SHMT1-206ENST00000579558 SWSAP1Q6NVH7 229 aa27.05■■□□□ 1.92
SHMT1-206ENST00000579558 PDXDC2PQ6P474 469 aa27.05■■□□□ 1.92
SHMT1-206ENST00000579558 RSPH3Q86UC2 560 aa27.05■■□□□ 1.92
SHMT1-206ENST00000579558 PHOSPHO2Q8TCD6 241 aa27.05■■□□□ 1.92
SHMT1-206ENST00000579558 KIF2CQ99661 725 aa27.05■■□□□ 1.92
SHMT1-206ENST00000579558 PCDHA11Q9Y5I1 949 aa27.05■■□□□ 1.92
SHMT1-206ENST00000579558 CYP3A7-CYP3A51PA0A087WV96 503 aa27.04■■□□□ 1.92
SHMT1-206ENST00000579558 ABHD14A-ACY1A0A1B0GW23 586 aa27.04■■□□□ 1.92
SHMT1-206ENST00000579558 RBAK-RBAKDNI3L0D1 243 aa27.04■■□□□ 1.92
SHMT1-206ENST00000579558 JAK2O60674 1132 aa27.04■■□□□ 1.92
SHMT1-206ENST00000579558 GAS7O60861 476 aa27.04■■□□□ 1.92
SHMT1-206ENST00000579558 PSAPP07602 524 aa27.04■■□□□ 1.92
SHMT1-206ENST00000579558 CYP3A7P24462 503 aa27.04■■□□□ 1.92
SHMT1-206ENST00000579558 WDR5P61964 334 aaKnown RBP27.04■■□□□ 1.92
SHMT1-206ENST00000579558 ST3GAL1Q11201 340 aa27.04■■□□□ 1.92
SHMT1-206ENST00000579558 IKBKEQ14164 716 aa27.04■■□□□ 1.92
SHMT1-206ENST00000579558 MOXD1Q6UVY6 613 aa27.04■■□□□ 1.92
SHMT1-206ENST00000579558 RPAINQ86UA6 219 aa27.04■■□□□ 1.92
SHMT1-206ENST00000579558 OXER1Q8TDS5 423 aa27.04■■□□□ 1.92
SHMT1-206ENST00000579558 TRAPPC12Q8WVT3 735 aa27.04■■□□□ 1.92
SHMT1-206ENST00000579558 SLC5A5Q92911 643 aa27.04■■□□□ 1.92
SHMT1-206ENST00000579558 RIT2Q99578 217 aa27.04■■□□□ 1.92
SHMT1-206ENST00000579558 SAMM50Q9Y512 469 aa27.04■■□□□ 1.92
SHMT1-206ENST00000579558 PCDHA10Q9Y5I2 948 aa27.04■■□□□ 1.92
SHMT1-206ENST00000579558 RBM25P49756 843 aaKnown RBP27.03■■□□□ 1.92
SHMT1-206ENST00000579558 FAM26DQ5JW98 314 aa27.03■■□□□ 1.92
SHMT1-206ENST00000579558 LRCH2Q5VUJ6 765 aa27.03■■□□□ 1.92
SHMT1-206ENST00000579558 DBF4BQ8NFT6 615 aa27.03■■□□□ 1.92
SHMT1-206ENST00000579558 ATP8B4Q8TF62 1192 aa27.03■■□□□ 1.92
SHMT1-206ENST00000579558 DNAJB3Q8WWF6 145 aa27.03■■□□□ 1.92
SHMT1-206ENST00000579558 ZBTB10Q96DT7 871 aa27.03■■□□□ 1.92
SHMT1-206ENST00000579558 TEKT3Q9BXF9 490 aa27.03■■□□□ 1.92
SHMT1-206ENST00000579558 SLC28A3Q9HAS3 691 aa27.03■■□□□ 1.92
SHMT1-206ENST00000579558 WDR64B1ANS9 1081 aa27.02■■□□□ 1.92
SHMT1-206ENST00000579558 HBP1O60381 514 aa27.02■■□□□ 1.92
SHMT1-206ENST00000579558 EFCAB14O75071 495 aa27.02■■□□□ 1.92
SHMT1-206ENST00000579558 MYOGP15173 224 aa27.02■■□□□ 1.92
SHMT1-206ENST00000579558 GRIN2CQ14957 1233 aa27.02■■□□□ 1.92
SHMT1-206ENST00000579558 LETM2Q2VYF4 491 aa27.02■■□□□ 1.92
SHMT1-206ENST00000579558 PLEKHG4Q58EX7 1191 aa27.02■■□□□ 1.92
SHMT1-206ENST00000579558 HERC6Q8IVU3 1022 aa27.02■■□□□ 1.92
SHMT1-206ENST00000579558 CKAP2LQ8IYA6 745 aa27.02■■□□□ 1.92
Retrieved 100 of 20,778 RNA–protein pairs in 63.1 ms