RNA–Protein interactions for RNA: ENST00000577636.5

SS18-207, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 580 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-207ENST00000577636 A0A1W2PQ27 194 aa11.5□□□□□ -0.57
SS18-207ENST00000577636 A0A1W2PQ64 194 aa11.5□□□□□ -0.57
SS18-207ENST00000577636 A0A1W2PQD8 194 aa11.5□□□□□ -0.57
SS18-207ENST00000577636 B4DLN1 442 aa11.5□□□□□ -0.57
SS18-207ENST00000577636 KINO60870 393 aaKnown RBP11.5□□□□□ -0.57
SS18-207ENST00000577636 SELPP16109 830 aa11.5□□□□□ -0.57
SS18-207ENST00000577636 KCNA5P22460 613 aa11.5□□□□□ -0.57
SS18-207ENST00000577636 MRPL12P52815 198 aaKnown RBP11.5□□□□□ -0.57
SS18-207ENST00000577636 NAPAP54920 295 aa11.5□□□□□ -0.57
SS18-207ENST00000577636 SLC39A14Q15043 492 aa11.5□□□□□ -0.57
SS18-207ENST00000577636 CNKSR3Q6P9H4 555 aa11.5□□□□□ -0.57
SS18-207ENST00000577636 BTNL9Q6UXG8 535 aa11.5□□□□□ -0.57
SS18-207ENST00000577636 LRRC8DQ7L1W4 858 aa11.5□□□□□ -0.57
SS18-207ENST00000577636 GJD3Q8N144 294 aa11.5□□□□□ -0.57
SS18-207ENST00000577636 LINC00301Q8NCQ3 95 aa11.5□□□□□ -0.57
SS18-207ENST00000577636 CAGE1Q8TC20 777 aa11.5□□□□□ -0.57
SS18-207ENST00000577636 AFAP1L1Q8TED9 768 aa11.5□□□□□ -0.57
SS18-207ENST00000577636 TGS1Q96RS0 853 aaKnown RBP11.5□□□□□ -0.57
SS18-207ENST00000577636 RAD9AQ99638 391 aa11.5□□□□□ -0.57
SS18-207ENST00000577636 NUP62CLQ9H1M0 184 aa11.5□□□□□ -0.57
SS18-207ENST00000577636 UBE2ZQ9H832 354 aaPredicted RBP11.5□□□□□ -0.57
SS18-207ENST00000577636 BARHL2Q9NY43 387 aa11.5□□□□□ -0.57
SS18-207ENST00000577636 LMCD1Q9NZU5 365 aa11.5□□□□□ -0.57
SS18-207ENST00000577636 TMEM63CQ9P1W3 806 aa11.5□□□□□ -0.57
SS18-207ENST00000577636 ARIH1Q9Y4X5 557 aaPredicted RBP11.5□□□□□ -0.57
SS18-207ENST00000577636 CLIC4Q9Y696 253 aa11.5□□□□□ -0.57
SS18-207ENST00000577636 REV3LO60673 3130 aa11.49□□□□□ -0.57
SS18-207ENST00000577636 LOC102724159A0A0B4J2E5 919 aa11.49□□□□□ -0.57
SS18-207ENST00000577636 CCDC194A0A1B0GVG4 234 aa11.49□□□□□ -0.57
SS18-207ENST00000577636 SYCE3A1L190 88 aa11.49□□□□□ -0.57
SS18-207ENST00000577636 NBNO60934 754 aa11.49□□□□□ -0.57
SS18-207ENST00000577636 PPP6R2O75170 966 aa11.49□□□□□ -0.57
SS18-207ENST00000577636 GH1P01241 217 aa11.49□□□□□ -0.57
SS18-207ENST00000577636 SNHG28P0DPA3 235 aa11.49□□□□□ -0.57
SS18-207ENST00000577636 CKBP12277 381 aa11.49□□□□□ -0.57
SS18-207ENST00000577636 IL9P15248 144 aa11.49□□□□□ -0.57
SS18-207ENST00000577636 TRAPPC10P48553 1259 aa11.49□□□□□ -0.57
SS18-207ENST00000577636 ZNF543Q08ER8 600 aa11.49□□□□□ -0.57
SS18-207ENST00000577636 TRAF1Q13077 416 aa11.49□□□□□ -0.57
SS18-207ENST00000577636 IKBKEQ14164 716 aa11.49□□□□□ -0.57
SS18-207ENST00000577636 GPNMBQ14956 572 aa11.49□□□□□ -0.57
SS18-207ENST00000577636 PWP2Q15269 919 aaKnown RBP11.49□□□□□ -0.57
SS18-207ENST00000577636 TCTN1Q2MV58 587 aa11.49□□□□□ -0.57
SS18-207ENST00000577636 ADALQ6DHV7 355 aa11.49□□□□□ -0.57
SS18-207ENST00000577636 PPP1R18Q6NYC8 613 aa11.49□□□□□ -0.57
SS18-207ENST00000577636 LRSAM1Q6UWE0 723 aa11.49□□□□□ -0.57
SS18-207ENST00000577636 HOMER1Q86YM7 354 aa11.49□□□□□ -0.57
SS18-207ENST00000577636 BLIDQ8IZY5 108 aa11.49□□□□□ -0.57
SS18-207ENST00000577636 C7orf31Q8N865 590 aa11.49□□□□□ -0.57
SS18-207ENST00000577636 DNERQ8NFT8 737 aa11.49□□□□□ -0.57
SS18-207ENST00000577636 MRPS27Q92552 414 aaKnown RBP11.49□□□□□ -0.57
SS18-207ENST00000577636 TBC1D5Q92609 795 aa11.49□□□□□ -0.57
SS18-207ENST00000577636 DHX38Q92620 1227 aaKnown RBP11.49□□□□□ -0.57
SS18-207ENST00000577636 UBA5Q9GZZ9 404 aa11.49□□□□□ -0.57
SS18-207ENST00000577636 TNMDQ9H2S6 317 aa11.49□□□□□ -0.57
SS18-207ENST00000577636 VAT1LQ9HCJ6 419 aa11.49□□□□□ -0.57
SS18-207ENST00000577636 HDAC6Q9UBN7 1215 aa11.49□□□□□ -0.57
SS18-207ENST00000577636 PCDHA4Q9UN74 947 aa11.49□□□□□ -0.57
SS18-207ENST00000577636 NCOR1O75376 2440 aa11.49□□□□□ -0.57
SS18-207ENST00000577636 LINC01553A4QN01 128 aa11.48□□□□□ -0.57
SS18-207ENST00000577636 SORBS3O60504 671 aa11.48□□□□□ -0.57
SS18-207ENST00000577636 CUTAO60888 179 aa11.48□□□□□ -0.57
SS18-207ENST00000577636 GJB5O95377 273 aa11.48□□□□□ -0.57
SS18-207ENST00000577636 MMP3P08254 477 aa11.48□□□□□ -0.57
SS18-207ENST00000577636 EDNRBP24530 442 aa11.48□□□□□ -0.57
SS18-207ENST00000577636 ERVK-21P61565 698 aa11.48□□□□□ -0.57
SS18-207ENST00000577636 FAM160A1Q05DH4 1040 aa11.48□□□□□ -0.57
SS18-207ENST00000577636 NR5A1Q13285 461 aa11.48□□□□□ -0.57
SS18-207ENST00000577636 PTCRAQ6ISU1 281 aaPredicted RBP11.48□□□□□ -0.57
SS18-207ENST00000577636 FSIP1Q8NA03 581 aa11.48□□□□□ -0.57
SS18-207ENST00000577636 DAGLBQ8NCG7 672 aa11.48□□□□□ -0.57
SS18-207ENST00000577636 GADD45GIP1Q8TAE8 222 aaPredicted RBP11.48□□□□□ -0.57
SS18-207ENST00000577636 GPKOWQ92917 476 aaPredicted RBP eCLIP11.48□□□□□ -0.57
SS18-207ENST00000577636 TAAR1Q96RJ0 339 aa11.48□□□□□ -0.57
SS18-207ENST00000577636 GLT8D2Q9H1C3 349 aa11.48□□□□□ -0.57
SS18-207ENST00000577636 CPVLQ9H3G5 476 aa11.48□□□□□ -0.57
SS18-207ENST00000577636 TSPY26PQ9H489 355 aa11.48□□□□□ -0.57
SS18-207ENST00000577636 RIOX1Q9H6W3 641 aa11.48□□□□□ -0.57
SS18-207ENST00000577636 PCDHA7Q9UN72 937 aa11.48□□□□□ -0.57
SS18-207ENST00000577636 LRRC37A2A6NM11 1700 aa11.48□□□□□ -0.57
SS18-207ENST00000577636 TET1Q8NFU7 2136 aa11.47□□□□□ -0.57
SS18-207ENST00000577636 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP11.47□□□□□ -0.57
SS18-207ENST00000577636 PNMA6FA0A0J9YX94 578 aa11.47□□□□□ -0.57
SS18-207ENST00000577636 ABHD14A-ACY1A0A1B0GW23 586 aa11.47□□□□□ -0.57
SS18-207ENST00000577636 ATP2B1P20020 1258 aa11.47□□□□□ -0.57
SS18-207ENST00000577636 PSEN2P49810 448 aa11.47□□□□□ -0.57
SS18-207ENST00000577636 ZNF200P98182 395 aaPredicted RBP11.47□□□□□ -0.57
SS18-207ENST00000577636 ZRSR1Q15695 479 aaKnown RBP11.47□□□□□ -0.57
SS18-207ENST00000577636 DGKDQ16760 1214 aa11.47□□□□□ -0.57
SS18-207ENST00000577636 LEXMQ3ZCV2 418 aa11.47□□□□□ -0.57
SS18-207ENST00000577636 ZNF618Q5T7W0 954 aa11.47□□□□□ -0.57
SS18-207ENST00000577636 WWC2Q6AWC2 1192 aa11.47□□□□□ -0.57
SS18-207ENST00000577636 LIN28BQ6ZN17 250 aaKnown RBP eCLIP11.47□□□□□ -0.57
SS18-207ENST00000577636 KRT25Q7Z3Z0 450 aa11.47□□□□□ -0.57
SS18-207ENST00000577636 FAM178BQ8IXR5 827 aa11.47□□□□□ -0.57
SS18-207ENST00000577636 MYOCDQ8IZQ8 938 aa11.47□□□□□ -0.57
SS18-207ENST00000577636 KRI1Q8N9T8 703 aaKnown RBP11.47□□□□□ -0.57
SS18-207ENST00000577636 FBXO22Q8NEZ5 403 aa11.47□□□□□ -0.57
SS18-207ENST00000577636 OXER1Q8TDS5 423 aa11.47□□□□□ -0.57
SS18-207ENST00000577636 KAT2BQ92831 832 aa11.47□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms