RNA–Protein interactions for RNA: ENST00000569063.5

CLK3-225, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 833 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-225ENST00000569063 ZNF577Q9BSK1 485 aa23.06■■□□□ 1.28
CLK3-225ENST00000569063 C22orf23Q9BZE7 217 aa23.06■■□□□ 1.28
CLK3-225ENST00000569063 NKX2-4Q9H2Z4 354 aa23.06■■□□□ 1.28
CLK3-225ENST00000569063 TBC1D22BQ9NU19 505 aa23.06■■□□□ 1.28
CLK3-225ENST00000569063 STK36Q9NRP7 1315 aa23.06■■□□□ 1.28
CLK3-225ENST00000569063 EDIL3O43854 480 aa23.05■■□□□ 1.28
CLK3-225ENST00000569063 SLC26A2P50443 739 aa23.05■■□□□ 1.28
CLK3-225ENST00000569063 WDR5P61964 334 aaKnown RBP23.05■■□□□ 1.28
CLK3-225ENST00000569063 TCTN1Q2MV58 587 aa23.05■■□□□ 1.28
CLK3-225ENST00000569063 PRR16Q569H4 304 aa23.05■■□□□ 1.28
CLK3-225ENST00000569063 MARCH8Q5T0T0 291 aa23.05■■□□□ 1.28
CLK3-225ENST00000569063 TAF2Q6P1X5 1199 aa23.05■■□□□ 1.28
CLK3-225ENST00000569063 ABHD15Q6UXT9 468 aa23.05■■□□□ 1.28
CLK3-225ENST00000569063 LENG9Q96B70 501 aa23.05■■□□□ 1.28
CLK3-225ENST00000569063 SLC28A3Q9HAS3 691 aa23.05■■□□□ 1.28
CLK3-225ENST00000569063 CDH23Q9H251 3354 aa23.04■■□□□ 1.28
CLK3-225ENST00000569063 RRN3P2A6NIE6 340 aa23.04■■□□□ 1.28
CLK3-225ENST00000569063 EFCAB14O75071 495 aa23.04■■□□□ 1.28
CLK3-225ENST00000569063 KCNJ6P48051 423 aa23.04■■□□□ 1.28
CLK3-225ENST00000569063 IKBKEQ14164 716 aa23.04■■□□□ 1.28
CLK3-225ENST00000569063 NPY5RQ15761 445 aa23.04■■□□□ 1.28
CLK3-225ENST00000569063 FAM26DQ5JW98 314 aa23.04■■□□□ 1.28
CLK3-225ENST00000569063 HERC6Q8IVU3 1022 aa23.04■■□□□ 1.28
CLK3-225ENST00000569063 BLIDQ8IZY5 108 aa23.04■■□□□ 1.28
CLK3-225ENST00000569063 TUBE1Q9UJT0 475 aa23.04■■□□□ 1.28
CLK3-225ENST00000569063 GBF1Q92538 1859 aa23.03■■□□□ 1.28
CLK3-225ENST00000569063 DDX39AO00148 427 aaKnown RBP23.03■■□□□ 1.28
CLK3-225ENST00000569063 INSRRP14616 1297 aa23.03■■□□□ 1.28
CLK3-225ENST00000569063 MYOGP15173 224 aa23.03■■□□□ 1.28
CLK3-225ENST00000569063 NEK4P51957 841 aa23.03■■□□□ 1.28
CLK3-225ENST00000569063 PLCB4Q15147 1175 aa23.03■■□□□ 1.28
CLK3-225ENST00000569063 PLEKHG4Q58EX7 1191 aa23.03■■□□□ 1.28
CLK3-225ENST00000569063 RUFY4Q6ZNE9 571 aa23.03■■□□□ 1.28
CLK3-225ENST00000569063 TBCKQ8TEA7 893 aa23.03■■□□□ 1.28
CLK3-225ENST00000569063 CTDNEP1O95476 244 aa23.02■■□□□ 1.28
CLK3-225ENST00000569063 CTSHP09668 335 aa23.02■■□□□ 1.28
CLK3-225ENST00000569063 FOSL2P15408 326 aa23.02■■□□□ 1.28
CLK3-225ENST00000569063 ZNF746Q6NUN9 644 aaPredicted RBP23.02■■□□□ 1.28
CLK3-225ENST00000569063 MIS18BP1Q6P0N0 1132 aa23.02■■□□□ 1.28
CLK3-225ENST00000569063 DBF4BQ8NFT6 615 aa23.02■■□□□ 1.28
CLK3-225ENST00000569063 PHF20Q9BVI0 1012 aa23.02■■□□□ 1.28
CLK3-225ENST00000569063 TRPC6Q9Y210 931 aa23.02■■□□□ 1.28
CLK3-225ENST00000569063 POTEB3A0JP26 581 aa23.01■■□□□ 1.27
CLK3-225ENST00000569063 KIF28PB7ZC32 967 aa23.01■■□□□ 1.27
CLK3-225ENST00000569063 RPLP2P05387 115 aaKnown RBP23.01■■□□□ 1.27
CLK3-225ENST00000569063 KRT76Q01546 638 aa23.01■■□□□ 1.27
CLK3-225ENST00000569063 MKRN4PQ13434 485 aaPredicted RBP23.01■■□□□ 1.27
CLK3-225ENST00000569063 ME3Q16798 604 aa23.01■■□□□ 1.27
CLK3-225ENST00000569063 FAM160B1Q5W0V3 765 aa23.01■■□□□ 1.27
CLK3-225ENST00000569063 POTEBQ6S5H4 581 aa23.01■■□□□ 1.27
CLK3-225ENST00000569063 RSPH3Q86UC2 560 aa23.01■■□□□ 1.27
CLK3-225ENST00000569063 SMAP1Q8IYB5 467 aaPredicted RBP23.01■■□□□ 1.27
CLK3-225ENST00000569063 UIMC1Q96RL1 719 aa23.01■■□□□ 1.27
CLK3-225ENST00000569063 CHD9Q3L8U1 2897 aa23.01■■□□□ 1.27
CLK3-225ENST00000569063 KAT6AQ92794 2004 aa23.01■■□□□ 1.27
CLK3-225ENST00000569063 CYP3A7-CYP3A51PA0A087WV96 503 aa23■■□□□ 1.27
CLK3-225ENST00000569063 BACH1O14867 736 aa23■■□□□ 1.27
CLK3-225ENST00000569063 CHRNA1P02708 482 aa23■■□□□ 1.27
CLK3-225ENST00000569063 XBP1P17861 261 aa23■■□□□ 1.27
CLK3-225ENST00000569063 CYP3A7P24462 503 aa23■■□□□ 1.27
CLK3-225ENST00000569063 IGBP1P78318 339 aa23■■□□□ 1.27
CLK3-225ENST00000569063 DEFB103AP81534 67 aa23■■□□□ 1.27
CLK3-225ENST00000569063 PPP2R2DQ66LE6 453 aa23■■□□□ 1.27
CLK3-225ENST00000569063 SWSAP1Q6NVH7 229 aa23■■□□□ 1.27
CLK3-225ENST00000569063 CCDC60Q8IWA6 550 aaPredicted RBP23■■□□□ 1.27
CLK3-225ENST00000569063 SEPT8Q92599 483 aa23■■□□□ 1.27
CLK3-225ENST00000569063 GTF3C6Q969F1 213 aa23■■□□□ 1.27
CLK3-225ENST00000569063 OSBPL7Q9BZF2 842 aa23■■□□□ 1.27
CLK3-225ENST00000569063 ZNF302Q9NR11 478 aa23■■□□□ 1.27
CLK3-225ENST00000569063 KCNJ14Q9UNX9 436 aa23■■□□□ 1.27
CLK3-225ENST00000569063 MSH4O15457 936 aa22.99■■□□□ 1.27
CLK3-225ENST00000569063 LARGE1O95461 756 aa22.99■■□□□ 1.27
CLK3-225ENST00000569063 CA3P07451 260 aa22.99■■□□□ 1.27
CLK3-225ENST00000569063 C8orf34Q49A92 452 aa22.99■■□□□ 1.27
CLK3-225ENST00000569063 Q4G0T1 1027 aa22.99■■□□□ 1.27
CLK3-225ENST00000569063 KRT25Q7Z3Z0 450 aa22.99■■□□□ 1.27
CLK3-225ENST00000569063 NECAB1Q8N987 351 aa22.99■■□□□ 1.27
CLK3-225ENST00000569063 SLC17A8Q8NDX2 589 aa22.99■■□□□ 1.27
CLK3-225ENST00000569063 MAFAQ8NHW3 353 aaPredicted RBP22.99■■□□□ 1.27
CLK3-225ENST00000569063 ATP8B4Q8TF62 1192 aa22.99■■□□□ 1.27
CLK3-225ENST00000569063 DNAJB3Q8WWF6 145 aa22.99■■□□□ 1.27
CLK3-225ENST00000569063 WASF1Q92558 559 aa22.99■■□□□ 1.27
CLK3-225ENST00000569063 RIT2Q99578 217 aa22.99■■□□□ 1.27
CLK3-225ENST00000569063 PRDM12Q9H4Q4 367 aa22.99■■□□□ 1.27
CLK3-225ENST00000569063 ORC3Q9UBD5 711 aaPredicted RBP22.99■■□□□ 1.27
CLK3-225ENST00000569063 TCEAL9Q9UHQ7 104 aa22.99■■□□□ 1.27
CLK3-225ENST00000569063 PCDHA2Q9Y5H9 948 aa22.99■■□□□ 1.27
CLK3-225ENST00000569063 PCDHA10Q9Y5I2 948 aa22.99■■□□□ 1.27
CLK3-225ENST00000569063 MAFBQ9Y5Q3 323 aaPredicted RBP22.99■■□□□ 1.27
CLK3-225ENST00000569063 TLL1O43897 1013 aa22.98■■□□□ 1.27
CLK3-225ENST00000569063 HBP1O60381 514 aa22.98■■□□□ 1.27
CLK3-225ENST00000569063 MGAT3Q09327 533 aa22.98■■□□□ 1.27
CLK3-225ENST00000569063 NONOQ15233 471 aaKnown RBP eCLIP22.98■■□□□ 1.275e-7■■□□□ 13.6
CLK3-225ENST00000569063 PDXDC2PQ6P474 469 aa22.98■■□□□ 1.27
CLK3-225ENST00000569063 MOXD1Q6UVY6 613 aa22.98■■□□□ 1.27
CLK3-225ENST00000569063 APBB2Q92870 758 aa22.98■■□□□ 1.27
CLK3-225ENST00000569063 SLC5A5Q92911 643 aa22.98■■□□□ 1.27
CLK3-225ENST00000569063 RBAK-RBAKDNI3L0D1 243 aa22.97■■□□□ 1.27
CLK3-225ENST00000569063 GJB5O95377 273 aa22.97■■□□□ 1.27
CLK3-225ENST00000569063 PSAPP07602 524 aa22.97■■□□□ 1.27
Retrieved 100 of 20,778 RNA–protein pairs in 77 ms