RNA–Protein interactions for RNA: ENST00000568539.1

SF3B3-212, Transcript of splicing factor 3b subunit 3, humanhuman

TSL 2

Gene SF3B3, Length 555 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B3-212ENST00000568539 TMEM92Q6UXU6 159 aa9.51□□□□□ -0.89
SF3B3-212ENST00000568539 TLK2Q86UE8 772 aa9.51□□□□□ -0.89
SF3B3-212ENST00000568539 PLPP6Q8IY26 295 aa9.51□□□□□ -0.89
SF3B3-212ENST00000568539 SMAP1Q8IYB5 467 aaPredicted RBP9.51□□□□□ -0.89
SF3B3-212ENST00000568539 RDM1Q8NG50 284 aa9.51□□□□□ -0.89
SF3B3-212ENST00000568539 OR6J1Q8NGC5 347 aa9.51□□□□□ -0.89
SF3B3-212ENST00000568539 PPTC7Q8NI37 304 aa9.51□□□□□ -0.89
SF3B3-212ENST00000568539 ARMC5Q96C12 935 aa9.51□□□□□ -0.89
SF3B3-212ENST00000568539 AK8Q96MA6 479 aa9.51□□□□□ -0.89
SF3B3-212ENST00000568539 SPATA33Q96N06 139 aa9.51□□□□□ -0.89
SF3B3-212ENST00000568539 GPR20Q99678 358 aa9.51□□□□□ -0.89
SF3B3-212ENST00000568539 RAB34Q9BZG1 259 aa9.51□□□□□ -0.89
SF3B3-212ENST00000568539 XRN2Q9H0D6 950 aaKnown RBP eCLIP9.51□□□□□ -0.89
SF3B3-212ENST00000568539 HMX1Q9NP08 348 aaPredicted RBP9.51□□□□□ -0.89
SF3B3-212ENST00000568539 LRWD1Q9UFC0 647 aa9.51□□□□□ -0.89
SF3B3-212ENST00000568539 DDX20Q9UHI6 824 aaKnown RBP9.51□□□□□ -0.89
SF3B3-212ENST00000568539 TCEAL9Q9UHQ7 104 aa9.51□□□□□ -0.89
SF3B3-212ENST00000568539 IGKV6D-21A0A0A0MT36 114 aa9.5□□□□□ -0.89
SF3B3-212ENST00000568539 A0A1W2PQ27 194 aa9.5□□□□□ -0.89
SF3B3-212ENST00000568539 A0A1W2PQ64 194 aa9.5□□□□□ -0.89
SF3B3-212ENST00000568539 A0A1W2PQD8 194 aa9.5□□□□□ -0.89
SF3B3-212ENST00000568539 GSTTP1A0A1W2PQM5 241 aa9.5□□□□□ -0.89
SF3B3-212ENST00000568539 A6NJR5 290 aa9.5□□□□□ -0.89
SF3B3-212ENST00000568539 WDR64B1ANS9 1081 aa9.5□□□□□ -0.89
SF3B3-212ENST00000568539 CTAGE5O15320 804 aa9.5□□□□□ -0.89
SF3B3-212ENST00000568539 DYNC1LI2O43237 492 aaPredicted RBP9.5□□□□□ -0.89
SF3B3-212ENST00000568539 MSCO60682 206 aa9.5□□□□□ -0.89
SF3B3-212ENST00000568539 SUPT20HL2P0C7V6 817 aa9.5□□□□□ -0.89
SF3B3-212ENST00000568539 RARBP10826 455 aa9.5□□□□□ -0.89
SF3B3-212ENST00000568539 HOXD8P13378 290 aaPredicted RBP9.5□□□□□ -0.89
SF3B3-212ENST00000568539 CDC25AP30304 524 aa9.5□□□□□ -0.89
SF3B3-212ENST00000568539 JAK3P52333 1124 aa9.5□□□□□ -0.89
SF3B3-212ENST00000568539 GJA9P57773 515 aa9.5□□□□□ -0.89
SF3B3-212ENST00000568539 EPHA7Q15375 998 aa9.5□□□□□ -0.89
SF3B3-212ENST00000568539 SPECC1Q5M775 1068 aa9.5□□□□□ -0.89
SF3B3-212ENST00000568539 LHX8Q68G74 356 aa9.5□□□□□ -0.89
SF3B3-212ENST00000568539 ABHD15Q6UXT9 468 aa9.5□□□□□ -0.89
SF3B3-212ENST00000568539 USP49Q70CQ1 688 aa9.5□□□□□ -0.89
SF3B3-212ENST00000568539 MIER3Q7Z3K6 550 aa9.5□□□□□ -0.89
SF3B3-212ENST00000568539 AFG1LQ8WV93 481 aa9.5□□□□□ -0.89
SF3B3-212ENST00000568539 SEPT1Q8WYJ6 367 aa9.5□□□□□ -0.89
SF3B3-212ENST00000568539 SYMPKQ92797 1274 aaKnown RBP9.5□□□□□ -0.89
SF3B3-212ENST00000568539 EPSTI1Q96J88 318 aa9.5□□□□□ -0.89
SF3B3-212ENST00000568539 ZNF333Q96JL9 665 aa9.5□□□□□ -0.89
SF3B3-212ENST00000568539 HSD17B14Q9BPX1 270 aa9.5□□□□□ -0.89
SF3B3-212ENST00000568539 MMTAG2Q9BU76 263 aaKnown RBP9.5□□□□□ -0.89
SF3B3-212ENST00000568539 UNC93B1Q9H1C4 597 aa9.5□□□□□ -0.89
SF3B3-212ENST00000568539 UPF3AQ9H1J1 476 aaKnown RBP9.5□□□□□ -0.89
SF3B3-212ENST00000568539 XPNPEP3Q9NQH7 507 aa9.5□□□□□ -0.89
SF3B3-212ENST00000568539 PAK6Q9NQU5 681 aaPredicted RBP9.5□□□□□ -0.89
SF3B3-212ENST00000568539 DISC1Q9NRI5 854 aa9.5□□□□□ -0.89
SF3B3-212ENST00000568539 SAMM50Q9Y512 469 aa9.5□□□□□ -0.89
SF3B3-212ENST00000568539 PCDHA10Q9Y5I2 948 aa9.5□□□□□ -0.89
SF3B3-212ENST00000568539 SYNRGQ9UMZ2 1314 aa9.5□□□□□ -0.89
SF3B3-212ENST00000568539 CENPFP49454 3210 aa9.5□□□□□ -0.89
SF3B3-212ENST00000568539 PLXNA1Q9UIW2 1896 aa9.49□□□□□ -0.89
SF3B3-212ENST00000568539 FAM237AA0A1B0GTK4 181 aa9.49□□□□□ -0.89
SF3B3-212ENST00000568539 NOP56O00567 594 aaKnown RBP9.49□□□□□ -0.89
SF3B3-212ENST00000568539 ADAMTS4O75173 837 aa9.49□□□□□ -0.89
SF3B3-212ENST00000568539 GADD45BO75293 160 aaPredicted RBP9.49□□□□□ -0.89
SF3B3-212ENST00000568539 PRPF40AO75400 957 aaKnown RBP9.49□□□□□ -0.89
SF3B3-212ENST00000568539 PGK1P00558 417 aa9.49□□□□□ -0.89
SF3B3-212ENST00000568539 PSAPP07602 524 aa9.49□□□□□ -0.89
SF3B3-212ENST00000568539 MMP3P08254 477 aa9.49□□□□□ -0.89
SF3B3-212ENST00000568539 CCL5P13501 91 aa9.49□□□□□ -0.89
SF3B3-212ENST00000568539 CMA1P23946 247 aa9.49□□□□□ -0.89
SF3B3-212ENST00000568539 RPA1P27694 616 aa9.49□□□□□ -0.89
SF3B3-212ENST00000568539 TCF7P36402 384 aaPredicted RBP9.49□□□□□ -0.89
SF3B3-212ENST00000568539 CPT1AP50416 773 aa9.49□□□□□ -0.89
SF3B3-212ENST00000568539 MTFR1Q15390 333 aa9.49□□□□□ -0.89
SF3B3-212ENST00000568539 RESP18Q5W5W9 173 aa9.49□□□□□ -0.89
SF3B3-212ENST00000568539 KRT79Q5XKE5 535 aa9.49□□□□□ -0.89
SF3B3-212ENST00000568539 MIS18BP1Q6P0N0 1132 aa9.49□□□□□ -0.89
SF3B3-212ENST00000568539 CABP7Q86V35 215 aa9.49□□□□□ -0.89
SF3B3-212ENST00000568539 ERMNQ8TAM6 284 aa9.49□□□□□ -0.89
SF3B3-212ENST00000568539 NEK9Q8TD19 979 aa9.49□□□□□ -0.89
SF3B3-212ENST00000568539 SNX29Q8TEQ0 813 aa9.49□□□□□ -0.89
SF3B3-212ENST00000568539 PCYT2Q99447 389 aa9.49□□□□□ -0.89
SF3B3-212ENST00000568539 EIF2AK1Q9BQI3 630 aaKnown RBP9.49□□□□□ -0.89
SF3B3-212ENST00000568539 POLR3CQ9BUI4 534 aaPredicted RBP9.49□□□□□ -0.89
SF3B3-212ENST00000568539 CCSER1Q9C0I3 900 aa9.49□□□□□ -0.89
SF3B3-212ENST00000568539 AP5M1Q9H0R1 490 aa9.49□□□□□ -0.89
SF3B3-212ENST00000568539 RGL1Q9NZL6 768 aa9.49□□□□□ -0.89
SF3B3-212ENST00000568539 COLQQ9Y215 455 aaPredicted RBP9.49□□□□□ -0.89
SF3B3-212ENST00000568539 MYH7BA7E2Y1 1941 aa9.48□□□□□ -0.89
SF3B3-212ENST00000568539 MYADML2A6NDP7 307 aa9.48□□□□□ -0.89
SF3B3-212ENST00000568539 GOLGA6L4A6NEF3 574 aa9.48□□□□□ -0.89
SF3B3-212ENST00000568539 GOLGA6L22H0YM25 854 aa9.48□□□□□ -0.89
SF3B3-212ENST00000568539 SLC26A4O43511 780 aa9.48□□□□□ -0.89
SF3B3-212ENST00000568539 PPFIA4O75335 1185 aa9.48□□□□□ -0.89
SF3B3-212ENST00000568539 MED24O75448 989 aa9.48□□□□□ -0.89
SF3B3-212ENST00000568539 LGR5O75473 907 aa9.48□□□□□ -0.89
SF3B3-212ENST00000568539 SLITRK3O94933 977 aa9.48□□□□□ -0.89
SF3B3-212ENST00000568539 MYCP01106 439 aaPredicted RBP9.48□□□□□ -0.89
SF3B3-212ENST00000568539 P4HBP07237 508 aaKnown RBP9.48□□□□□ -0.89
SF3B3-212ENST00000568539 C6orf222P0C671 652 aaPredicted RBP9.48□□□□□ -0.89
SF3B3-212ENST00000568539 SPATA31C1P0DKV0 1188 aa9.48□□□□□ -0.89
SF3B3-212ENST00000568539 CST5P28325 142 aaPredicted RBP9.48□□□□□ -0.89
SF3B3-212ENST00000568539 MCM4P33991 863 aa9.48□□□□□ -0.89
SF3B3-212ENST00000568539 CCT6AP40227 531 aaKnown RBP9.48□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 37.4 ms