RNA–Protein interactions for RNA: ENST00000568191.1

VPS35-207, Transcript of VPS35, retromer complex component, humanhuman

TSL 4

Gene VPS35, Length 520 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-207ENST00000568191 USP10Q14694 798 aaKnown RBP4.44□□□□□ -1.7
VPS35-207ENST00000568191 FIGNQ5HY92 759 aa4.44□□□□□ -1.7
VPS35-207ENST00000568191 FAM209AQ5JX71 171 aa4.44□□□□□ -1.7
VPS35-207ENST00000568191 LIMS2Q7Z4I7 341 aa4.44□□□□□ -1.7
VPS35-207ENST00000568191 GGNQ86UU5 652 aa4.44□□□□□ -1.7
VPS35-207ENST00000568191 MBD6Q96DN6 1003 aa4.44□□□□□ -1.7
VPS35-207ENST00000568191 MAGEB10Q96LZ2 347 aaPredicted RBP4.44□□□□□ -1.7
VPS35-207ENST00000568191 C1QTNF3Q9BXJ4 246 aa4.44□□□□□ -1.7
VPS35-207ENST00000568191 CARD11Q9BXL7 1154 aa4.44□□□□□ -1.7
VPS35-207ENST00000568191 RBPJLQ9UBG7 517 aa4.44□□□□□ -1.7
VPS35-207ENST00000568191 FBXO10Q9UK96 956 aa4.44□□□□□ -1.7
VPS35-207ENST00000568191 SRPK3Q9UPE1 567 aa4.44□□□□□ -1.7
VPS35-207ENST00000568191 JAG2Q9Y219 1238 aa4.44□□□□□ -1.7
VPS35-207ENST00000568191 C1QTNF3-AMACRE9PGA6 284 aa4.43□□□□□ -1.7
VPS35-207ENST00000568191 KLHL18O94889 574 aa4.43□□□□□ -1.7
VPS35-207ENST00000568191 SRGAP2CP0DJJ0 459 aa4.43□□□□□ -1.7
VPS35-207ENST00000568191 ZNF20P17024 532 aa4.43□□□□□ -1.7
VPS35-207ENST00000568191 DNM2P50570 870 aa4.43□□□□□ -1.7
VPS35-207ENST00000568191 WDR72Q3MJ13 1102 aa4.43□□□□□ -1.7
VPS35-207ENST00000568191 ZMAT1Q5H9K5 638 aa4.43□□□□□ -1.7
VPS35-207ENST00000568191 CXXC5Q7LFL8 322 aaKnown RBP4.43□□□□□ -1.7
VPS35-207ENST00000568191 OSTM1Q86WC4 334 aa4.43□□□□□ -1.7
VPS35-207ENST00000568191 PROSER1Q86XN7 944 aa4.43□□□□□ -1.7
VPS35-207ENST00000568191 NUDT10Q8NFP7 164 aa4.43□□□□□ -1.7
VPS35-207ENST00000568191 PCDH19Q8TAB3 1148 aa4.43□□□□□ -1.7
VPS35-207ENST00000568191 NUDT11Q96G61 164 aa4.43□□□□□ -1.7
VPS35-207ENST00000568191 AJUBAQ96IF1 538 aa4.43□□□□□ -1.7
VPS35-207ENST00000568191 SCYL1Q96KG9 808 aa4.43□□□□□ -1.7
VPS35-207ENST00000568191 DEPDC7Q96QD5 511 aa4.43□□□□□ -1.7
VPS35-207ENST00000568191 SRPK1Q96SB4 655 aaKnown RBP4.43□□□□□ -1.7
VPS35-207ENST00000568191 CD244Q9BZW8 370 aa4.43□□□□□ -1.7
VPS35-207ENST00000568191 KCND1Q9NSA2 647 aa4.43□□□□□ -1.7
VPS35-207ENST00000568191 PPP4R1LQ9P1A2 415 aa4.43□□□□□ -1.7
VPS35-207ENST00000568191 MRPS23Q9Y3D9 190 aaKnown RBP4.43□□□□□ -1.7
VPS35-207ENST00000568191 ASXL2Q76L83 1435 aa4.43□□□□□ -1.7
VPS35-207ENST00000568191 CCDC66A2RUB6 948 aa4.42□□□□□ -1.7
VPS35-207ENST00000568191 ARVCFO00192 962 aa4.42□□□□□ -1.7
VPS35-207ENST00000568191 FAM153BP0C7A2 387 aa4.42□□□□□ -1.7
VPS35-207ENST00000568191 PYGMP11217 842 aa4.42□□□□□ -1.7
VPS35-207ENST00000568191 PDE6AP16499 860 aa4.42□□□□□ -1.7
VPS35-207ENST00000568191 POLD1P28340 1107 aa4.42□□□□□ -1.7
VPS35-207ENST00000568191 RBL2Q08999 1139 aa4.42□□□□□ -1.7
VPS35-207ENST00000568191 PHF19Q5T6S3 580 aa4.42□□□□□ -1.7
VPS35-207ENST00000568191 PTRH1Q86Y79 214 aaKnown RBP4.42□□□□□ -1.7
VPS35-207ENST00000568191 GIMAP8Q8ND71 665 aaPredicted RBP4.42□□□□□ -1.7
VPS35-207ENST00000568191 ZSWIM2Q8NEG5 633 aa4.42□□□□□ -1.7
VPS35-207ENST00000568191 MKL1Q969V6 931 aa4.42□□□□□ -1.7
VPS35-207ENST00000568191 LMF1Q96S06 567 aa4.42□□□□□ -1.7
VPS35-207ENST00000568191 TACO1Q9BSH4 297 aaKnown RBP4.42□□□□□ -1.7
VPS35-207ENST00000568191 KLC2Q9H0B6 622 aa4.42□□□□□ -1.7
VPS35-207ENST00000568191 NDOR1Q9UHB4 597 aa4.42□□□□□ -1.7
VPS35-207ENST00000568191 ST6GALNAC2Q9UJ37 374 aa4.42□□□□□ -1.7
VPS35-207ENST00000568191 WASF3Q9UPY6 502 aa4.42□□□□□ -1.7
VPS35-207ENST00000568191 PCDHA9Q9Y5H5 950 aa4.42□□□□□ -1.7
VPS35-207ENST00000568191 ESYT3A0FGR9 886 aa4.41□□□□□ -1.7
VPS35-207ENST00000568191 PRAMEF25A6NGN4 478 aa4.41□□□□□ -1.7
VPS35-207ENST00000568191 ACOT7O00154 380 aa4.41□□□□□ -1.7
VPS35-207ENST00000568191 DIAPH1O60610 1272 aaKnown RBP4.41□□□□□ -1.7
VPS35-207ENST00000568191 CLASP2O75122 1294 aaKnown RBP4.41□□□□□ -1.7
VPS35-207ENST00000568191 HIP1RO75146 1068 aa4.41□□□□□ -1.7
VPS35-207ENST00000568191 NPTXRO95502 500 aa4.41□□□□□ -1.7
VPS35-207ENST00000568191 CRTAMO95727 393 aa4.41□□□□□ -1.7
VPS35-207ENST00000568191 COL6A1P12109 1028 aa4.41□□□□□ -1.7
VPS35-207ENST00000568191 PTGS1P23219 599 aa4.41□□□□□ -1.7
VPS35-207ENST00000568191 RAC3P60763 192 aa4.41□□□□□ -1.7
VPS35-207ENST00000568191 HERVK_113P62684 666 aa4.41□□□□□ -1.7
VPS35-207ENST00000568191 USP51Q70EK9 711 aa4.41□□□□□ -1.7
VPS35-207ENST00000568191 KATNBL1Q9H079 304 aa4.41□□□□□ -1.7
VPS35-207ENST00000568191 TMPRSS5Q9H3S3 457 aa4.41□□□□□ -1.7
VPS35-207ENST00000568191 SLC39A2Q9NP94 309 aa4.41□□□□□ -1.7
VPS35-207ENST00000568191 INCENPQ9NQS7 918 aa4.41□□□□□ -1.7
VPS35-207ENST00000568191 GALNT8Q9NY28 637 aa4.41□□□□□ -1.7
VPS35-207ENST00000568191 TSC22D4Q9Y3Q8 395 aa4.41□□□□□ -1.7
VPS35-207ENST00000568191 TELO2Q9Y4R8 837 aa4.41□□□□□ -1.7
VPS35-207ENST00000568191 SLC4A7Q9Y6M7 1214 aa4.41□□□□□ -1.7
VPS35-207ENST00000568191 ZNF623O75123 536 aa4.4□□□□□ -1.71
VPS35-207ENST00000568191 CSF2RBP32927 897 aa4.4□□□□□ -1.71
VPS35-207ENST00000568191 SELENOPP49908 381 aa4.4□□□□□ -1.71
VPS35-207ENST00000568191 MEOX1P50221 254 aa4.4□□□□□ -1.71
VPS35-207ENST00000568191 LACTBP83111 547 aaPredicted RBP4.4□□□□□ -1.71
VPS35-207ENST00000568191 CALML6Q8TD86 181 aa4.4□□□□□ -1.71
VPS35-207ENST00000568191 SH3RF2Q8TEC5 729 aa4.4□□□□□ -1.71
VPS35-207ENST00000568191 THAP3Q8WTV1 239 aaPredicted RBP4.4□□□□□ -1.71
VPS35-207ENST00000568191 DNAJC7Q99615 494 aa4.4□□□□□ -1.71
VPS35-207ENST00000568191 SFMBT1Q9UHJ3 866 aa4.4□□□□□ -1.71
VPS35-207ENST00000568191 FAM90A27PA6NNH2 459 aa4.39□□□□□ -1.71
VPS35-207ENST00000568191 B4E1Z4 1266 aa4.39□□□□□ -1.71
VPS35-207ENST00000568191 MAN2B1O00754 1011 aa4.39□□□□□ -1.71
VPS35-207ENST00000568191 MUSKO15146 869 aa4.39□□□□□ -1.71
VPS35-207ENST00000568191 C6orf222P0C671 652 aaPredicted RBP4.39□□□□□ -1.71
VPS35-207ENST00000568191 ETV4P43268 484 aa4.39□□□□□ -1.71
VPS35-207ENST00000568191 JAM2P57087 298 aa4.39□□□□□ -1.71
VPS35-207ENST00000568191 ZXDAP98168 799 aa4.39□□□□□ -1.71
VPS35-207ENST00000568191 SERINC3Q13530 473 aa4.39□□□□□ -1.71
VPS35-207ENST00000568191 ICAM4Q14773 271 aa4.39□□□□□ -1.71
VPS35-207ENST00000568191 NFE2L2Q16236 605 aa4.39□□□□□ -1.71
VPS35-207ENST00000568191 FOXB2Q5VYV0 432 aa4.39□□□□□ -1.71
VPS35-207ENST00000568191 OTOP2Q7RTS6 562 aa4.39□□□□□ -1.71
VPS35-207ENST00000568191 PMFBP1Q8TBY8 1022 aa4.39□□□□□ -1.71
VPS35-207ENST00000568191 SH3RF3Q8TEJ3 882 aaPredicted RBP4.39□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 42.5 ms