RNA–Protein interactions for RNA: ENST00000568076.6

CLN3-230, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,968 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-230ENST00000568076 UTP18Q9Y5J1 556 aaKnown RBP eCLIP22.39■■□□□ 1.17
CLN3-230ENST00000568076 NFIBO00712 420 aa22.38■■□□□ 1.17
CLN3-230ENST00000568076 NR2F2P24468 414 aa22.38■■□□□ 1.17
CLN3-230ENST00000568076 PDXDC1Q6P996 788 aa22.38■■□□□ 1.17
CLN3-230ENST00000568076 B3GNT9Q6UX72 402 aa22.38■■□□□ 1.17
CLN3-230ENST00000568076 GPIHBP1Q8IV16 184 aa22.38■■□□□ 1.17
CLN3-230ENST00000568076 CLEC4DQ8WXI8 215 aa22.38■■□□□ 1.17
CLN3-230ENST00000568076 GOLGA1Q92805 767 aa22.38■■□□□ 1.17
CLN3-230ENST00000568076 ZNF577Q9BSK1 485 aa22.38■■□□□ 1.17
CLN3-230ENST00000568076 UNC45AQ9H3U1 944 aa22.38■■□□□ 1.17
CLN3-230ENST00000568076 OGFRQ9NZT2 677 aa22.38■■□□□ 1.17
CLN3-230ENST00000568076 BRCA1P38398 1863 aaKnown RBP22.38■■□□□ 1.17
CLN3-230ENST00000568076 CETN3O15182 167 aa22.38■■□□□ 1.17
CLN3-230ENST00000568076 CHMP4BP1P59074 171 aa22.38■■□□□ 1.17
CLN3-230ENST00000568076 BMT2Q1RMZ1 405 aa22.38■■□□□ 1.17
CLN3-230ENST00000568076 C1orf186Q6ZWK4 172 aa22.38■■□□□ 1.17
CLN3-230ENST00000568076 GPR161Q8N6U8 529 aaKnown RBP22.38■■□□□ 1.17
CLN3-230ENST00000568076 PRPF38AQ8NAV1 312 aaKnown RBP22.38■■□□□ 1.17
CLN3-230ENST00000568076 HOOK2Q96ED9 719 aa22.38■■□□□ 1.17
CLN3-230ENST00000568076 EDEM3Q9BZQ6 932 aa22.38■■□□□ 1.17
CLN3-230ENST00000568076 DUSP10Q9Y6W6 482 aa22.38■■□□□ 1.17
CLN3-230ENST00000568076 WDR46O15213 610 aaKnown RBP22.37■■□□□ 1.17
CLN3-230ENST00000568076 KRT86O43790 486 aa22.37■■□□□ 1.17
CLN3-230ENST00000568076 ITGB5P18084 799 aa22.37■■□□□ 1.17
CLN3-230ENST00000568076 CEP112Q8N8E3 955 aa22.37■■□□□ 1.17
CLN3-230ENST00000568076 RABGGTAQ92696 567 aa22.37■■□□□ 1.17
CLN3-230ENST00000568076 PURBQ96QR8 312 aaKnown RBP22.37■■□□□ 1.17
CLN3-230ENST00000568076 KIAA1683Q9H0B3 1180 aa22.37■■□□□ 1.17
CLN3-230ENST00000568076 RPTORQ8N122 1335 aa22.36■■□□□ 1.17
CLN3-230ENST00000568076 SFI1A8K8P3 1242 aa22.36■■□□□ 1.17
CLN3-230ENST00000568076 TBCAO75347 108 aaKnown RBP22.36■■□□□ 1.17
CLN3-230ENST00000568076 IPO7O95373 1038 aaKnown RBP22.36■■□□□ 1.17
CLN3-230ENST00000568076 EIF4A3P38919 411 aaKnown RBP22.36■■□□□ 1.17
CLN3-230ENST00000568076 VAV2P52735 878 aa22.36■■□□□ 1.17
CLN3-230ENST00000568076 SETQ01105 290 aaPredicted RBP22.36■■□□□ 1.17
CLN3-230ENST00000568076 APBA1Q02410 837 aa22.36■■□□□ 1.17
CLN3-230ENST00000568076 KCNA1Q09470 495 aa22.36■■□□□ 1.17
CLN3-230ENST00000568076 TNFAIP1Q13829 316 aa22.36■■□□□ 1.17
CLN3-230ENST00000568076 SAMD7Q7Z3H4 446 aa22.36■■□□□ 1.17
CLN3-230ENST00000568076 LPAR1Q92633 364 aa22.36■■□□□ 1.17
CLN3-230ENST00000568076 MXRA8Q9BRK3 442 aa22.36■■□□□ 1.17
CLN3-230ENST00000568076 CRACR2AQ9BSW2 395 aa22.36■■□□□ 1.17
CLN3-230ENST00000568076 ASTN1O14525 1302 aa22.36■■□□□ 1.17
CLN3-230ENST00000568076 PDXKO00764 312 aa22.36■■□□□ 1.17
CLN3-230ENST00000568076 KIF11P52732 1056 aa22.36■■□□□ 1.17
CLN3-230ENST00000568076 IL31RAQ8NI17 732 aa22.36■■□□□ 1.17
CLN3-230ENST00000568076 LSM14BQ9BX40 385 aaKnown RBP22.36■■□□□ 1.17
CLN3-230ENST00000568076 WDR11Q9BZH6 1224 aa22.36■■□□□ 1.17
CLN3-230ENST00000568076 OLFML3Q9NRN5 406 aa22.36■■□□□ 1.17
CLN3-230ENST00000568076 FAM53CQ9NYF3 392 aa22.36■■□□□ 1.17
CLN3-230ENST00000568076 FAM184BQ9ULE4 1060 aa22.36■■□□□ 1.17
CLN3-230ENST00000568076 MYO6Q9UM54 1294 aa22.36■■□□□ 1.17
CLN3-230ENST00000568076 IPO5O00410 1097 aaKnown RBP22.35■■□□□ 1.17
CLN3-230ENST00000568076 ENC1O14682 589 aa22.35■■□□□ 1.17
CLN3-230ENST00000568076 LCA5LO95447 670 aa22.35■■□□□ 1.17
CLN3-230ENST00000568076 RPS12P25398 132 aaKnown RBP22.35■■□□□ 1.17
CLN3-230ENST00000568076 HGSNATQ68CP4 663 aa22.35■■□□□ 1.17
CLN3-230ENST00000568076 TRAPPC11Q7Z392 1133 aa22.35■■□□□ 1.17
CLN3-230ENST00000568076 CACNA2D4Q7Z3S7 1137 aa22.35■■□□□ 1.17
CLN3-230ENST00000568076 MICALL2Q8IY33 904 aa22.35■■□□□ 1.17
CLN3-230ENST00000568076 NLRC4Q9NPP4 1024 aa22.35■■□□□ 1.17
CLN3-230ENST00000568076 CEP72Q9P209 647 aa22.35■■□□□ 1.17
CLN3-230ENST00000568076 GCNT3O95395 438 aa22.34■■□□□ 1.17
CLN3-230ENST00000568076 ATP1A1P05023 1023 aaKnown RBP22.34■■□□□ 1.17
CLN3-230ENST00000568076 GMPSP49915 693 aaPredicted RBP22.34■■□□□ 1.17
CLN3-230ENST00000568076 KCNH2Q12809 1159 aa22.34■■□□□ 1.17
CLN3-230ENST00000568076 WHAMMP3Q1A5X7 153 aa22.34■■□□□ 1.17
CLN3-230ENST00000568076 ASTE1Q2TB18 679 aaPredicted RBP22.34■■□□□ 1.17
CLN3-230ENST00000568076 CPXCR1Q8N123 301 aa22.34■■□□□ 1.17
CLN3-230ENST00000568076 HDAC6Q9UBN7 1215 aa22.34■■□□□ 1.17
CLN3-230ENST00000568076 PPP1R1BQ9UD71 204 aaPredicted RBP22.34■■□□□ 1.17
CLN3-230ENST00000568076 CALUO43852 315 aaPredicted RBP22.34■■□□□ 1.17
CLN3-230ENST00000568076 TLR2O60603 784 aa22.34■■□□□ 1.17
CLN3-230ENST00000568076 CTNND1O60716 968 aaKnown RBP22.34■■□□□ 1.17
CLN3-230ENST00000568076 MUTP22033 750 aa22.34■■□□□ 1.17
CLN3-230ENST00000568076 EPHA7Q15375 998 aa22.34■■□□□ 1.17
CLN3-230ENST00000568076 SPA17Q15506 151 aa22.34■■□□□ 1.17
CLN3-230ENST00000568076 ARHGAP27Q6ZUM4 889 aa22.34■■□□□ 1.17
CLN3-230ENST00000568076 TEKT3Q9BXF9 490 aa22.34■■□□□ 1.17
CLN3-230ENST00000568076 PARD6BQ9BYG5 372 aa22.34■■□□□ 1.17
CLN3-230ENST00000568076 SLC38A10Q9HBR0 1119 aa22.34■■□□□ 1.17
CLN3-230ENST00000568076 RAVER2Q9HCJ3 691 aaKnown RBP22.34■■□□□ 1.17
CLN3-230ENST00000568076 TYW1Q9NV66 732 aaKnown RBP22.34■■□□□ 1.17
CLN3-230ENST00000568076 ARGLU1Q9NWB6 273 aaPredicted RBP22.34■■□□□ 1.17
CLN3-230ENST00000568076 HACL1Q9UJ83 578 aa22.34■■□□□ 1.17
CLN3-230ENST00000568076 PCDHA13Q9Y5I0 950 aa22.34■■□□□ 1.17
CLN3-230ENST00000568076 AKAP3O75969 853 aa22.33■■□□□ 1.17
CLN3-230ENST00000568076 ZRANB2O95218 330 aaKnown RBP eCLIP22.33■■□□□ 1.17
CLN3-230ENST00000568076 GAP43P17677 238 aa22.33■■□□□ 1.17
CLN3-230ENST00000568076 GHRHRQ02643 423 aa22.33■■□□□ 1.17
CLN3-230ENST00000568076 TBC1D10BQ4KMP7 808 aaPredicted RBP22.33■■□□□ 1.17
CLN3-230ENST00000568076 MUM1L1Q5H9M0 696 aa22.33■■□□□ 1.17
CLN3-230ENST00000568076 FRMD5Q7Z6J6 570 aa22.33■■□□□ 1.17
CLN3-230ENST00000568076 IKZF4Q9H2S9 585 aa22.33■■□□□ 1.17
CLN3-230ENST00000568076 FRMPD4Q14CM0 1322 aa22.33■■□□□ 1.16
CLN3-230ENST00000568076 TGFB1I1O43294 461 aa22.32■■□□□ 1.16
CLN3-230ENST00000568076 FAM13AO94988 1023 aa22.32■■□□□ 1.16
CLN3-230ENST00000568076 ALAS1P13196 640 aa22.32■■□□□ 1.16
CLN3-230ENST00000568076 NMT1P30419 496 aaKnown RBP22.32■■□□□ 1.16
CLN3-230ENST00000568076 POLR2FP61218 127 aaKnown RBP22.32■■□□□ 1.16
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms