RNA–Protein interactions for RNA: ENST00000566083.6

CLN3-222, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,409 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-222ENST00000566083 RWDD3Q9Y3V2 267 aa17.01■□□□□ 0.31
CLN3-222ENST00000566083 BDP1A6H8Y1 2624 aa17■□□□□ 0.31
CLN3-222ENST00000566083 ESYT2A0FGR8 921 aa17■□□□□ 0.31
CLN3-222ENST00000566083 MEIS1O00470 390 aa17■□□□□ 0.31
CLN3-222ENST00000566083 REC8O95072 547 aa17■□□□□ 0.31
CLN3-222ENST00000566083 CHRNA1P02708 482 aa17■□□□□ 0.31
CLN3-222ENST00000566083 MARK3P27448 753 aa17■□□□□ 0.31
CLN3-222ENST00000566083 PSMA5P28066 241 aa17■□□□□ 0.31
CLN3-222ENST00000566083 METAP2P50579 478 aaKnown RBP eCLIP17■□□□□ 0.31
CLN3-222ENST00000566083 STAT5BP51692 787 aa17■□□□□ 0.31
CLN3-222ENST00000566083 ADCK5Q3MIX3 580 aa17■□□□□ 0.31
CLN3-222ENST00000566083 FBXL16Q8N461 479 aa17■□□□□ 0.31
CLN3-222ENST00000566083 GDPD5Q8WTR4 605 aa17■□□□□ 0.31
CLN3-222ENST00000566083 KCNB2Q92953 911 aa17■□□□□ 0.31
CLN3-222ENST00000566083 TCEANC2Q96MN5 208 aa17■□□□□ 0.31
CLN3-222ENST00000566083 NAP1L2Q9ULW6 460 aaPredicted RBP17■□□□□ 0.31
CLN3-222ENST00000566083 TRPC6Q9Y210 931 aa17■□□□□ 0.31
CLN3-222ENST00000566083 TELO2Q9Y4R8 837 aa17■□□□□ 0.31
CLN3-222ENST00000566083 LOC101059915A0A1B0GWI6 518 aaPredicted RBP16.99■□□□□ 0.31
CLN3-222ENST00000566083 INSRRP14616 1297 aa16.99■□□□□ 0.31
CLN3-222ENST00000566083 GNA11P29992 359 aa16.99■□□□□ 0.31
CLN3-222ENST00000566083 ACTR2P61160 394 aa16.99■□□□□ 0.31
CLN3-222ENST00000566083 TFF2Q03403 129 aa16.99■□□□□ 0.31
CLN3-222ENST00000566083 PFKFB3Q16875 520 aaPredicted RBP16.99■□□□□ 0.31
CLN3-222ENST00000566083 KRT40Q6A162 431 aa16.99■□□□□ 0.31
CLN3-222ENST00000566083 BLOC1S2Q6QNY1 142 aa16.99■□□□□ 0.31
CLN3-222ENST00000566083 NME8Q8N427 588 aa16.99■□□□□ 0.31
CLN3-222ENST00000566083 IL17RAQ96F46 866 aa16.99■□□□□ 0.31
CLN3-222ENST00000566083 FTHL17Q9BXU8 183 aa16.99■□□□□ 0.31
CLN3-222ENST00000566083 C6orf50Q9HD87 102 aa16.99■□□□□ 0.31
CLN3-222ENST00000566083 EPB41L2O43491 1005 aaKnown RBP16.98■□□□□ 0.31
CLN3-222ENST00000566083 UPP2O95045 317 aa16.98■□□□□ 0.31
CLN3-222ENST00000566083 ATG7O95352 703 aa16.98■□□□□ 0.31
CLN3-222ENST00000566083 GHRP10912 638 aa16.98■□□□□ 0.31
CLN3-222ENST00000566083 SCG2P13521 617 aa16.98■□□□□ 0.31
CLN3-222ENST00000566083 HSPA4P34932 840 aa16.98■□□□□ 0.31
CLN3-222ENST00000566083 CLK2P49760 499 aaKnown RBP16.98■□□□□ 0.31
CLN3-222ENST00000566083 MRPS6P82932 125 aaKnown RBP16.98■□□□□ 0.31
CLN3-222ENST00000566083 AKAP17AQ02040 695 aaKnown RBP16.98■□□□□ 0.31
CLN3-222ENST00000566083 EPC2Q52LR7 807 aa16.98■□□□□ 0.31
CLN3-222ENST00000566083 MARCH8Q5T0T0 291 aa16.98■□□□□ 0.31
CLN3-222ENST00000566083 FAM160B1Q5W0V3 765 aa16.98■□□□□ 0.31
CLN3-222ENST00000566083 TYW1BQ6NUM6 668 aa16.98■□□□□ 0.31
CLN3-222ENST00000566083 RUFY4Q6ZNE9 571 aa16.98■□□□□ 0.31
CLN3-222ENST00000566083 TSHZ1Q6ZSZ6 1077 aa16.98■□□□□ 0.31
CLN3-222ENST00000566083 BICD2Q8TD16 824 aa16.98■□□□□ 0.31
CLN3-222ENST00000566083 DNAJB3Q8WWF6 145 aa16.98■□□□□ 0.31
CLN3-222ENST00000566083 MRPL38Q96DV4 380 aaKnown RBP16.98■□□□□ 0.31
CLN3-222ENST00000566083 CCDC136Q96JN2 1154 aa16.98■□□□□ 0.31
CLN3-222ENST00000566083 AGO4Q9HCK5 861 aaKnown RBP16.98■□□□□ 0.31
CLN3-222ENST00000566083 FAM217BQ9NTX9 383 aaPredicted RBP16.98■□□□□ 0.31
CLN3-222ENST00000566083 TCEAL9Q9UHQ7 104 aa16.98■□□□□ 0.31
CLN3-222ENST00000566083 PCDHA2Q9Y5H9 948 aa16.98■□□□□ 0.31
CLN3-222ENST00000566083 COL4A6Q14031 1691 aa16.98■□□□□ 0.31
CLN3-222ENST00000566083 SIP14410 1827 aa16.98■□□□□ 0.31
CLN3-222ENST00000566083 H3BNC9 293 aa16.97■□□□□ 0.31
CLN3-222ENST00000566083 RB1P06400 928 aa16.97■□□□□ 0.31
CLN3-222ENST00000566083 CYP3A4P08684 503 aa16.97■□□□□ 0.31
CLN3-222ENST00000566083 CDC27P30260 824 aa16.97■□□□□ 0.31
CLN3-222ENST00000566083 SETQ01105 290 aaPredicted RBP16.97■□□□□ 0.31
CLN3-222ENST00000566083 MGAT3Q09327 533 aa16.97■□□□□ 0.31
CLN3-222ENST00000566083 LPIN1Q14693 890 aa16.97■□□□□ 0.31
CLN3-222ENST00000566083 TIGD5Q53EQ6 642 aa16.97■□□□□ 0.31
CLN3-222ENST00000566083 FBXO47Q5MNV8 452 aa16.97■□□□□ 0.31
CLN3-222ENST00000566083 SPRED2Q7Z698 418 aa16.97■□□□□ 0.31
CLN3-222ENST00000566083 TMEM192Q8IY95 271 aa16.97■□□□□ 0.31
CLN3-222ENST00000566083 FIBCD1Q8N539 461 aa16.97■□□□□ 0.31
CLN3-222ENST00000566083 CYP2W1Q8TAV3 490 aa16.97■□□□□ 0.31
CLN3-222ENST00000566083 JAKMIP1Q96N16 626 aaKnown RBP16.97■□□□□ 0.31
CLN3-222ENST00000566083 PCYT2Q99447 389 aa16.97■□□□□ 0.31
CLN3-222ENST00000566083 C17orf80Q9BSJ5 609 aa16.97■□□□□ 0.31
CLN3-222ENST00000566083 ZMYND12Q9H0C1 365 aa16.97■□□□□ 0.31
CLN3-222ENST00000566083 TBC1D22BQ9NU19 505 aa16.97■□□□□ 0.31
CLN3-222ENST00000566083 RNF216Q9NWF9 866 aaPredicted RBP16.97■□□□□ 0.31
CLN3-222ENST00000566083 POTEB3A0JP26 581 aa16.96■□□□□ 0.31
CLN3-222ENST00000566083 PRPF3O43395 683 aaKnown RBP16.96■□□□□ 0.31
CLN3-222ENST00000566083 HBP1O60381 514 aa16.96■□□□□ 0.31
CLN3-222ENST00000566083 ARP10275 920 aa16.96■□□□□ 0.31
CLN3-222ENST00000566083 ADD1P35611 737 aaKnown RBP16.96■□□□□ 0.31
CLN3-222ENST00000566083 KCNQ1P51787 676 aa16.96■□□□□ 0.31
CLN3-222ENST00000566083 IGBP1P78318 339 aa16.96■□□□□ 0.31
CLN3-222ENST00000566083 PLCB4Q15147 1175 aa16.96■□□□□ 0.31
CLN3-222ENST00000566083 ODR4Q5SWX8 454 aa16.96■□□□□ 0.31
CLN3-222ENST00000566083 POTEBQ6S5H4 581 aa16.96■□□□□ 0.31
CLN3-222ENST00000566083 Q6ZUG5 572 aa16.96■□□□□ 0.31
CLN3-222ENST00000566083 PLA2G4DQ86XP0 818 aa16.96■□□□□ 0.31
CLN3-222ENST00000566083 REXO1Q8N1G1 1221 aaKnown RBP16.96■□□□□ 0.31
CLN3-222ENST00000566083 CCDC148Q8NFR7 591 aa16.96■□□□□ 0.31
CLN3-222ENST00000566083 BRF1Q92994 677 aa16.96■□□□□ 0.31
CLN3-222ENST00000566083 CDY2AQ9Y6F7 541 aa16.96■□□□□ 0.31
CLN3-222ENST00000566083 NID2Q14112 1375 aa16.96■□□□□ 0.31
CLN3-222ENST00000566083 IGKV6D-21A0A0A0MT36 114 aa16.96■□□□□ 0.3
CLN3-222ENST00000566083 SMIM35A0A1B0GVV1 85 aa16.96■□□□□ 0.3
CLN3-222ENST00000566083 ENPP3O14638 875 aa16.96■□□□□ 0.3
CLN3-222ENST00000566083 BACH1O14867 736 aa16.96■□□□□ 0.3
CLN3-222ENST00000566083 NCK2O43639 380 aa16.96■□□□□ 0.3
CLN3-222ENST00000566083 GPM6BQ13491 265 aa16.96■□□□□ 0.3
CLN3-222ENST00000566083 MIS18BP1Q6P0N0 1132 aa16.96■□□□□ 0.3
CLN3-222ENST00000566083 PGBD1Q96JS3 809 aa16.96■□□□□ 0.3
CLN3-222ENST00000566083 C11orf84Q9BUA3 381 aaPredicted RBP16.96■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 15.4 ms