RNA–Protein interactions for RNA: ENST00000566040.1

CLN3-220, Transcript of CLN3, battenin, humanhuman

TSL 4

Gene CLN3, Length 544 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-220ENST00000566040 MTMR9Q96QG7 549 aa11.17□□□□□ -0.62
CLN3-220ENST00000566040 CEP89Q96ST8 783 aa11.17□□□□□ -0.62
CLN3-220ENST00000566040 ZNF577Q9BSK1 485 aa11.17□□□□□ -0.62
CLN3-220ENST00000566040 PPP1R12CQ9BZL4 782 aa11.17□□□□□ -0.62
CLN3-220ENST00000566040 TMEM39AQ9NV64 488 aa11.17□□□□□ -0.62
CLN3-220ENST00000566040 WRAP73Q9P2S5 460 aaPredicted RBP11.17□□□□□ -0.62
CLN3-220ENST00000566040 TCHHQ07283 1943 aa11.16□□□□□ -0.62
CLN3-220ENST00000566040 CCDC194A0A1B0GVG4 234 aa11.16□□□□□ -0.62
CLN3-220ENST00000566040 MBLAC1A4D2B0 266 aaPredicted RBP11.16□□□□□ -0.62
CLN3-220ENST00000566040 DCDC2CA8MYV0 355 aa11.16□□□□□ -0.62
CLN3-220ENST00000566040 NOP56O00567 594 aaKnown RBP11.16□□□□□ -0.62
CLN3-220ENST00000566040 TREHO43280 583 aa11.16□□□□□ -0.62
CLN3-220ENST00000566040 CSF2RAP15509 400 aa11.16□□□□□ -0.62
CLN3-220ENST00000566040 MARK3P27448 753 aa11.16□□□□□ -0.62
CLN3-220ENST00000566040 ZNF76P36508 570 aa11.16□□□□□ -0.62
CLN3-220ENST00000566040 MCM2P49736 904 aa11.16□□□□□ -0.62
CLN3-220ENST00000566040 MKRN4PQ13434 485 aaPredicted RBP11.16□□□□□ -0.62
CLN3-220ENST00000566040 RASIP1Q5U651 963 aa11.16□□□□□ -0.62
CLN3-220ENST00000566040 MFSD5Q6N075 450 aa11.16□□□□□ -0.62
CLN3-220ENST00000566040 ZNF746Q6NUN9 644 aaPredicted RBP11.16□□□□□ -0.62
CLN3-220ENST00000566040 VTI1AQ96AJ9 217 aa11.16□□□□□ -0.62
CLN3-220ENST00000566040 SCLYQ96I15 445 aa11.16□□□□□ -0.62
CLN3-220ENST00000566040 RIT2Q99578 217 aa11.16□□□□□ -0.62
CLN3-220ENST00000566040 SEZ6LQ9BYH1 1024 aa11.16□□□□□ -0.62
CLN3-220ENST00000566040 SETD4Q9NVD3 440 aa11.16□□□□□ -0.62
CLN3-220ENST00000566040 DDX25Q9UHL0 483 aaKnown RBP11.16□□□□□ -0.62
CLN3-220ENST00000566040 MAFBQ9Y5Q3 323 aaPredicted RBP11.16□□□□□ -0.62
CLN3-220ENST00000566040 EYSQ5T1H1 3165 aa11.15□□□□□ -0.62
CLN3-220ENST00000566040 COL4A4P53420 1690 aaPredicted RBP11.15□□□□□ -0.62
CLN3-220ENST00000566040 TMEM150BA6NC51 233 aa11.15□□□□□ -0.62
CLN3-220ENST00000566040 K7ELQ4 463 aaPredicted RBP11.15□□□□□ -0.62
CLN3-220ENST00000566040 PPP2R5CQ13362 524 aa11.15□□□□□ -0.62
CLN3-220ENST00000566040 PTGISQ16647 500 aa11.15□□□□□ -0.62
CLN3-220ENST00000566040 BRDTQ58F21 947 aaPredicted RBP11.15□□□□□ -0.62
CLN3-220ENST00000566040 FAM47CQ5HY64 1035 aa11.15□□□□□ -0.62
CLN3-220ENST00000566040 LRCH2Q5VUJ6 765 aa11.15□□□□□ -0.62
CLN3-220ENST00000566040 PLPPR4Q7Z2D5 763 aa11.15□□□□□ -0.62
CLN3-220ENST00000566040 NOSTRINQ8IVI9 506 aa11.15□□□□□ -0.62
CLN3-220ENST00000566040 LINC01465Q8N7H1 131 aa11.15□□□□□ -0.62
CLN3-220ENST00000566040 SDF4Q9BRK5 362 aa11.15□□□□□ -0.62
CLN3-220ENST00000566040 KATNAL1Q9BW62 490 aa11.15□□□□□ -0.62
CLN3-220ENST00000566040 FOXP1Q9H334 677 aaPredicted RBP11.15□□□□□ -0.62
CLN3-220ENST00000566040 HIPK3Q9H422 1215 aa11.15□□□□□ -0.62
CLN3-220ENST00000566040 TBC1D22BQ9NU19 505 aa11.15□□□□□ -0.62
CLN3-220ENST00000566040 NLRC5Q86WI3 1866 aa11.15□□□□□ -0.63
CLN3-220ENST00000566040 PITPNM1O00562 1244 aa11.14□□□□□ -0.63
CLN3-220ENST00000566040 CCNT1O60563 726 aaKnown RBP11.14□□□□□ -0.63
CLN3-220ENST00000566040 NBNO60934 754 aa11.14□□□□□ -0.63
CLN3-220ENST00000566040 INSRRP14616 1297 aa11.14□□□□□ -0.63
CLN3-220ENST00000566040 GCFC2P16383 781 aaKnown RBP11.14□□□□□ -0.63
CLN3-220ENST00000566040 XBP1P17861 261 aa11.14□□□□□ -0.63
CLN3-220ENST00000566040 CCL23P55773 120 aa11.14□□□□□ -0.63
CLN3-220ENST00000566040 CHMP4BP1P59074 171 aa11.14□□□□□ -0.63
CLN3-220ENST00000566040 KRT76Q01546 638 aa11.14□□□□□ -0.63
CLN3-220ENST00000566040 MGAT3Q09327 533 aa11.14□□□□□ -0.63
CLN3-220ENST00000566040 SHHQ15465 462 aa11.14□□□□□ -0.63
CLN3-220ENST00000566040 IL17AQ16552 155 aa11.14□□□□□ -0.63
CLN3-220ENST00000566040 HABP4Q5JVS0 413 aaKnown RBP11.14□□□□□ -0.63
CLN3-220ENST00000566040 TMEM240Q5SV17 173 aa11.14□□□□□ -0.63
CLN3-220ENST00000566040 FAM109BQ6ICB4 259 aaPredicted RBP11.14□□□□□ -0.63
CLN3-220ENST00000566040 BUD13Q9BRD0 619 aaKnown RBP eCLIP11.14□□□□□ -0.63
CLN3-220ENST00000566040 ERAP1Q9NZ08 941 aa11.14□□□□□ -0.63
CLN3-220ENST00000566040 PCDHB6Q9Y5E3 794 aa11.14□□□□□ -0.63
CLN3-220ENST00000566040 TBX3O15119 743 aa11.13□□□□□ -0.63
CLN3-220ENST00000566040 TLR3O15455 904 aaKnown RBP11.13□□□□□ -0.63
CLN3-220ENST00000566040 CHMP2AO43633 222 aa11.13□□□□□ -0.63
CLN3-220ENST00000566040 GAS7O60861 476 aa11.13□□□□□ -0.63
CLN3-220ENST00000566040 IQCF3P0C7M6 154 aa11.13□□□□□ -0.63
CLN3-220ENST00000566040 ACRP10323 421 aa11.13□□□□□ -0.63
CLN3-220ENST00000566040 CKBP12277 381 aa11.13□□□□□ -0.63
CLN3-220ENST00000566040 RAG1P15918 1043 aa11.13□□□□□ -0.63
CLN3-220ENST00000566040 FXR1P51114 621 aaKnown RBP eCLIP11.13□□□□□ -0.63
CLN3-220ENST00000566040 STAT5BP51692 787 aa11.13□□□□□ -0.63
CLN3-220ENST00000566040 FPGSQ05932 587 aa11.13□□□□□ -0.63
CLN3-220ENST00000566040 PTK7Q13308 1070 aa11.13□□□□□ -0.63
CLN3-220ENST00000566040 TARBP2Q15633 366 aaKnown RBP11.13□□□□□ -0.63
CLN3-220ENST00000566040 GRIK4Q16099 956 aa11.13□□□□□ -0.63
CLN3-220ENST00000566040 ZNF618Q5T7W0 954 aa11.13□□□□□ -0.63
CLN3-220ENST00000566040 SWSAP1Q6NVH7 229 aa11.13□□□□□ -0.63
CLN3-220ENST00000566040 SMAP1Q8IYB5 467 aaPredicted RBP11.13□□□□□ -0.63
CLN3-220ENST00000566040 C7orf31Q8N865 590 aa11.13□□□□□ -0.63
CLN3-220ENST00000566040 ATP8B4Q8TF62 1192 aa11.13□□□□□ -0.63
CLN3-220ENST00000566040 SMARCAD1Q9H4L7 1026 aa11.13□□□□□ -0.63
CLN3-220ENST00000566040 DISC1Q9NRI5 854 aa11.13□□□□□ -0.63
CLN3-220ENST00000566040 CXXC1Q9P0U4 656 aaPredicted RBP11.13□□□□□ -0.63
CLN3-220ENST00000566040 PCDHA10Q9Y5I2 948 aa11.13□□□□□ -0.63
CLN3-220ENST00000566040 FNDC1Q4ZHG4 1894 aaPredicted RBP11.12□□□□□ -0.63
CLN3-220ENST00000566040 C17orf102A2RUQ5 167 aa11.12□□□□□ -0.63
CLN3-220ENST00000566040 WDR64B1ANS9 1081 aa11.12□□□□□ -0.63
CLN3-220ENST00000566040 C22orf31O95567 290 aa11.12□□□□□ -0.63
CLN3-220ENST00000566040 CXCL10P02778 98 aa11.12□□□□□ -0.63
CLN3-220ENST00000566040 PRKCEQ02156 737 aa11.12□□□□□ -0.63
CLN3-220ENST00000566040 RESTQ13127 1097 aa11.12□□□□□ -0.63
CLN3-220ENST00000566040 PPFIA1Q13136 1202 aa11.12□□□□□ -0.63
CLN3-220ENST00000566040 RPAINQ86UA6 219 aa11.12□□□□□ -0.63
CLN3-220ENST00000566040 TDHQ8IZJ6 230 aa11.12□□□□□ -0.63
CLN3-220ENST00000566040 ZNF579Q8NAF0 562 aaKnown RBP11.12□□□□□ -0.63
CLN3-220ENST00000566040 ATP6V0A1Q93050 837 aa11.12□□□□□ -0.63
CLN3-220ENST00000566040 INTS4Q96HW7 963 aaKnown RBP11.12□□□□□ -0.63
CLN3-220ENST00000566040 FAM20AQ96MK3 541 aa11.12□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms