RNA–Protein interactions for RNA: ENST00000564994.5

VPS39-208, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 629 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-208ENST00000564994 NCOR1O75376 2440 aa12.36□□□□□ -0.43
VPS39-208ENST00000564994 NFASCO94856 1347 aa12.36□□□□□ -0.43
VPS39-208ENST00000564994 BRWD1Q9NSI6 2320 aa12.36□□□□□ -0.43
VPS39-208ENST00000564994 EVPLQ92817 2033 aa12.35□□□□□ -0.43
VPS39-208ENST00000564994 IGLV3-22A0A075B6J6 115 aa12.35□□□□□ -0.43
VPS39-208ENST00000564994 EFCAB14O75071 495 aa12.35□□□□□ -0.43
VPS39-208ENST00000564994 CHRNA1P02708 482 aa12.35□□□□□ -0.43
VPS39-208ENST00000564994 NEFLP07196 543 aa12.35□□□□□ -0.43
VPS39-208ENST00000564994 ACTR2P61160 394 aa12.35□□□□□ -0.43
VPS39-208ENST00000564994 CCT2P78371 535 aaKnown RBP12.35□□□□□ -0.43
VPS39-208ENST00000564994 PPFIA1Q13136 1202 aa12.35□□□□□ -0.43
VPS39-208ENST00000564994 GRIK4Q16099 956 aa12.35□□□□□ -0.43
VPS39-208ENST00000564994 KRT40Q6A162 431 aa12.35□□□□□ -0.43
VPS39-208ENST00000564994 FAM117BQ6P1L5 589 aa12.35□□□□□ -0.43
VPS39-208ENST00000564994 RUFY3Q7L099 469 aa12.35□□□□□ -0.43
VPS39-208ENST00000564994 NLRC5Q86WI3 1866 aa12.34□□□□□ -0.43
VPS39-208ENST00000564994 LOC101059915A0A1B0GWI6 518 aaPredicted RBP12.34□□□□□ -0.43
VPS39-208ENST00000564994 MBLAC1A4D2B0 266 aaPredicted RBP12.34□□□□□ -0.43
VPS39-208ENST00000564994 LPXNO60711 386 aa12.34□□□□□ -0.43
VPS39-208ENST00000564994 ATG7O95352 703 aa12.34□□□□□ -0.43
VPS39-208ENST00000564994 CCNE2O96020 404 aa12.34□□□□□ -0.43
VPS39-208ENST00000564994 CYP3A4P08684 503 aa12.34□□□□□ -0.43
VPS39-208ENST00000564994 IFNAR1P17181 557 aa12.34□□□□□ -0.43
VPS39-208ENST00000564994 POU3F3P20264 500 aaPredicted RBP12.34□□□□□ -0.43
VPS39-208ENST00000564994 MGAT3Q09327 533 aa12.34□□□□□ -0.43
VPS39-208ENST00000564994 NIPA1Q7RTP0 329 aa12.34□□□□□ -0.43
VPS39-208ENST00000564994 RPAINQ86UA6 219 aa12.34□□□□□ -0.43
VPS39-208ENST00000564994 RASGRP4Q8TDF6 673 aa12.34□□□□□ -0.43
VPS39-208ENST00000564994 DNAJB3Q8WWF6 145 aa12.34□□□□□ -0.43
VPS39-208ENST00000564994 SEPT8Q92599 483 aa12.34□□□□□ -0.43
VPS39-208ENST00000564994 UIMC1Q96RL1 719 aa12.34□□□□□ -0.43
VPS39-208ENST00000564994 RAD9AQ99638 391 aa12.34□□□□□ -0.43
VPS39-208ENST00000564994 SDF4Q9BRK5 362 aa12.34□□□□□ -0.43
VPS39-208ENST00000564994 LARP6Q9BRS8 491 aaKnown RBP12.34□□□□□ -0.43
VPS39-208ENST00000564994 ZBED2Q9BTP6 218 aa12.34□□□□□ -0.43
VPS39-208ENST00000564994 SLC26A6Q9BXS9 759 aa12.34□□□□□ -0.43
VPS39-208ENST00000564994 RNF26Q9BY78 433 aaPredicted RBP12.34□□□□□ -0.43
VPS39-208ENST00000564994 VPS54Q9P1Q0 977 aa12.34□□□□□ -0.43
VPS39-208ENST00000564994 TUBE1Q9UJT0 475 aa12.34□□□□□ -0.43
VPS39-208ENST00000564994 MTCH2Q9Y6C9 303 aa12.34□□□□□ -0.43
VPS39-208ENST00000564994 TCF20Q9UGU0 1960 aaKnown RBP12.33□□□□□ -0.44
VPS39-208ENST00000564994 IGKV6D-21A0A0A0MT36 114 aa12.33□□□□□ -0.44
VPS39-208ENST00000564994 DDX39AO00148 427 aaKnown RBP12.33□□□□□ -0.44
VPS39-208ENST00000564994 DHX15O43143 795 aaKnown RBP12.33□□□□□ -0.44
VPS39-208ENST00000564994 EDIL3O43854 480 aa12.33□□□□□ -0.44
VPS39-208ENST00000564994 INSRRP14616 1297 aa12.33□□□□□ -0.44
VPS39-208ENST00000564994 ZNF76P36508 570 aa12.33□□□□□ -0.44
VPS39-208ENST00000564994 IGBP1P78318 339 aa12.33□□□□□ -0.44
VPS39-208ENST00000564994 GRB10Q13322 594 aa12.33□□□□□ -0.44
VPS39-208ENST00000564994 PLCB4Q15147 1175 aa12.33□□□□□ -0.44
VPS39-208ENST00000564994 TAF2Q6P1X5 1199 aa12.33□□□□□ -0.44
VPS39-208ENST00000564994 PLPPR4Q7Z2D5 763 aa12.33□□□□□ -0.44
VPS39-208ENST00000564994 PLA2G4DQ86XP0 818 aa12.33□□□□□ -0.44
VPS39-208ENST00000564994 MYOCDQ8IZQ8 938 aa12.33□□□□□ -0.44
VPS39-208ENST00000564994 REXO1Q8N1G1 1221 aaKnown RBP12.33□□□□□ -0.44
VPS39-208ENST00000564994 MICALL1Q8N3F8 863 aa12.33□□□□□ -0.44
VPS39-208ENST00000564994 TRAPPC12Q8WVT3 735 aa12.33□□□□□ -0.44
VPS39-208ENST00000564994 UPF3BQ9BZI7 483 aaKnown RBP12.33□□□□□ -0.44
VPS39-208ENST00000564994 TM6SF1Q9BZW5 370 aa12.33□□□□□ -0.44
VPS39-208ENST00000564994 AZI2Q9H6S1 392 aa12.33□□□□□ -0.44
VPS39-208ENST00000564994 C6orf50Q9HD87 102 aa12.33□□□□□ -0.44
VPS39-208ENST00000564994 BDP1A6H8Y1 2624 aa12.33□□□□□ -0.44
VPS39-208ENST00000564994 TTC3P53804 2025 aa12.32□□□□□ -0.44
VPS39-208ENST00000564994 LINC01553A4QN01 128 aa12.32□□□□□ -0.44
VPS39-208ENST00000564994 AMHP03971 560 aa12.32□□□□□ -0.44
VPS39-208ENST00000564994 GHRP10912 638 aa12.32□□□□□ -0.44
VPS39-208ENST00000564994 GNA11P29992 359 aa12.32□□□□□ -0.44
VPS39-208ENST00000564994 STAT5BP51692 787 aa12.32□□□□□ -0.44
VPS39-208ENST00000564994 HTRA4P83105 476 aaPredicted RBP12.32□□□□□ -0.44
VPS39-208ENST00000564994 AKAP17AQ02040 695 aaKnown RBP12.32□□□□□ -0.44
VPS39-208ENST00000564994 LPIN1Q14693 890 aa12.32□□□□□ -0.44
VPS39-208ENST00000564994 ABHD15Q6UXT9 468 aa12.32□□□□□ -0.44
VPS39-208ENST00000564994 CCDC12Q8WUD4 166 aaPredicted RBP12.32□□□□□ -0.44
VPS39-208ENST00000564994 TOP1MTQ969P6 601 aa12.32□□□□□ -0.44
VPS39-208ENST00000564994 IFIH1Q9BYX4 1025 aaKnown RBP12.32□□□□□ -0.44
VPS39-208ENST00000564994 PPP4R2Q9NY27 417 aa12.32□□□□□ -0.44
VPS39-208ENST00000564994 THEGQ9P2T0 379 aa12.32□□□□□ -0.44
VPS39-208ENST00000564994 TRPC6Q9Y210 931 aa12.32□□□□□ -0.44
VPS39-208ENST00000564994 CYP46A1Q9Y6A2 500 aa12.32□□□□□ -0.44
VPS39-208ENST00000564994 RRN3P2A6NIE6 340 aa12.31□□□□□ -0.44
VPS39-208ENST00000564994 IPO5O00410 1097 aaKnown RBP12.31□□□□□ -0.44
VPS39-208ENST00000564994 ATP4AP20648 1035 aa12.31□□□□□ -0.44
VPS39-208ENST00000564994 CIITAP33076 1130 aa12.31□□□□□ -0.44
VPS39-208ENST00000564994 ERVK-21P61565 698 aa12.31□□□□□ -0.44
VPS39-208ENST00000564994 TJAP1Q5JTD0 557 aa12.31□□□□□ -0.44
VPS39-208ENST00000564994 MCTP2Q6DN12 878 aa12.31□□□□□ -0.44
VPS39-208ENST00000564994 CCDC60Q8IWA6 550 aaPredicted RBP12.31□□□□□ -0.44
VPS39-208ENST00000564994 SP7Q8TDD2 431 aaPredicted RBP12.31□□□□□ -0.44
VPS39-208ENST00000564994 GDPD5Q8WTR4 605 aa12.31□□□□□ -0.44
VPS39-208ENST00000564994 APBB2Q92870 758 aa12.31□□□□□ -0.44
VPS39-208ENST00000564994 LENG9Q96B70 501 aa12.31□□□□□ -0.44
VPS39-208ENST00000564994 ZNF274Q96GC6 653 aaPredicted RBP12.31□□□□□ -0.44
VPS39-208ENST00000564994 FAM49AQ9H0Q0 323 aaPredicted RBP12.31□□□□□ -0.44
VPS39-208ENST00000564994 SUGCTQ9HAC7 445 aa12.31□□□□□ -0.44
VPS39-208ENST00000564994 MTUS1Q9ULD2 1270 aa12.31□□□□□ -0.44
VPS39-208ENST00000564994 INSL6Q9Y581 213 aa12.31□□□□□ -0.44
VPS39-208ENST00000564994 CDY2AQ9Y6F7 541 aa12.31□□□□□ -0.44
VPS39-208ENST00000564994 RALGAPA2Q2PPJ7 1873 aa12.31□□□□□ -0.44
VPS39-208ENST00000564994 ATG2AQ2TAZ0 1938 aa12.31□□□□□ -0.44
VPS39-208ENST00000564994 MYO7AQ13402 2215 aa12.3□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 9.3 ms