RNA–Protein interactions for RNA: ENST00000564091.6

CLN3-211, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 790 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-211ENST00000564091 JPH1Q9HDC5 661 aaPredicted RBP19.32■□□□□ 0.68
CLN3-211ENST00000564091 MYH7BA7E2Y1 1941 aa19.31■□□□□ 0.68
CLN3-211ENST00000564091 COL4A4P53420 1690 aaPredicted RBP19.31■□□□□ 0.68
CLN3-211ENST00000564091 GRXCR2A6NFK2 248 aa19.31■□□□□ 0.68
CLN3-211ENST00000564091 PI4K2BG5E9Z4 385 aa19.31■□□□□ 0.68
CLN3-211ENST00000564091 MAFGO15525 162 aa19.31■□□□□ 0.68
CLN3-211ENST00000564091 LINC00271P0C7V0 271 aa19.31■□□□□ 0.68
CLN3-211ENST00000564091 INSRRP14616 1297 aa19.31■□□□□ 0.68
CLN3-211ENST00000564091 SSTR3P32745 418 aaPredicted RBP19.31■□□□□ 0.68
CLN3-211ENST00000564091 WWC2Q6AWC2 1192 aa19.31■□□□□ 0.68
CLN3-211ENST00000564091 SGMS1Q86VZ5 419 aa19.31■□□□□ 0.68
CLN3-211ENST00000564091 NSUN3Q9H649 340 aaKnown RBP19.31■□□□□ 0.68
CLN3-211ENST00000564091 AGO3Q9H9G7 860 aaKnown RBP19.31■□□□□ 0.68
CLN3-211ENST00000564091 KCNH7Q9NS40 1196 aa19.31■□□□□ 0.68
CLN3-211ENST00000564091 GRM6O15303 877 aa19.3■□□□□ 0.68
CLN3-211ENST00000564091 BMPR1AP36894 532 aa19.3■□□□□ 0.68
CLN3-211ENST00000564091 MRPS6P82932 125 aaKnown RBP19.3■□□□□ 0.68
CLN3-211ENST00000564091 TYW1BQ6NUM6 668 aa19.3■□□□□ 0.68
CLN3-211ENST00000564091 PABPC5Q96DU9 382 aaKnown RBP19.3■□□□□ 0.68
CLN3-211ENST00000564091 TCEANC2Q96MN5 208 aa19.3■□□□□ 0.68
CLN3-211ENST00000564091 MXRA8Q9BRK3 442 aa19.3■□□□□ 0.68
CLN3-211ENST00000564091 SLC9A2Q9UBY0 812 aa19.3■□□□□ 0.68
CLN3-211ENST00000564091 GPR37L1O60883 481 aa19.29■□□□□ 0.68
CLN3-211ENST00000564091 CSPG5O95196 566 aa19.29■□□□□ 0.68
CLN3-211ENST00000564091 ARP10275 920 aa19.29■□□□□ 0.68
CLN3-211ENST00000564091 CD52P31358 61 aa19.29■□□□□ 0.68
CLN3-211ENST00000564091 TMEM62Q0P6H9 643 aa19.29■□□□□ 0.68
CLN3-211ENST00000564091 SYNE3Q6ZMZ3 975 aa19.29■□□□□ 0.68
CLN3-211ENST00000564091 TSHZ1Q6ZSZ6 1077 aa19.29■□□□□ 0.68
CLN3-211ENST00000564091 SKAP1Q86WV1 359 aa19.29■□□□□ 0.68
CLN3-211ENST00000564091 TRAPPC12Q8WVT3 735 aa19.29■□□□□ 0.68
CLN3-211ENST00000564091 LINC01599Q8WXQ3 324 aa19.29■□□□□ 0.68
CLN3-211ENST00000564091 AZI2Q9H6S1 392 aa19.29■□□□□ 0.68
CLN3-211ENST00000564091 RC3H2Q9HBD1 1191 aaKnown RBP19.29■□□□□ 0.68
CLN3-211ENST00000564091 CLDND1Q9NY35 253 aa19.29■□□□□ 0.68
CLN3-211ENST00000564091 TRPC6Q9Y210 931 aa19.29■□□□□ 0.68
CLN3-211ENST00000564091 ADGRA3Q8IWK6 1321 aa19.28■□□□□ 0.68
CLN3-211ENST00000564091 RRN3P2A6NIE6 340 aa19.28■□□□□ 0.68
CLN3-211ENST00000564091 C5orf67F2Z3F1 127 aa19.28■□□□□ 0.68
CLN3-211ENST00000564091 RB1P06400 928 aa19.28■□□□□ 0.68
CLN3-211ENST00000564091 NAPAP54920 295 aa19.28■□□□□ 0.68
CLN3-211ENST00000564091 ACTR2P61160 394 aa19.28■□□□□ 0.68
CLN3-211ENST00000564091 BTG3Q14201 252 aaPredicted RBP19.28■□□□□ 0.68
CLN3-211ENST00000564091 COL19A1Q14993 1142 aa19.28■□□□□ 0.68
CLN3-211ENST00000564091 PLCB4Q15147 1175 aa19.28■□□□□ 0.68
CLN3-211ENST00000564091 PUS10Q3MIT2 529 aaKnown RBP19.28■□□□□ 0.68
CLN3-211ENST00000564091 RTN4RL1Q86UN2 441 aaPredicted RBP19.28■□□□□ 0.68
CLN3-211ENST00000564091 ZNF689Q96CS4 500 aaPredicted RBP19.28■□□□□ 0.68
CLN3-211ENST00000564091 SDF4Q9BRK5 362 aa19.28■□□□□ 0.68
CLN3-211ENST00000564091 C11orf84Q9BUA3 381 aaPredicted RBP19.28■□□□□ 0.68
CLN3-211ENST00000564091 HCN4Q9Y3Q4 1203 aa19.28■□□□□ 0.68
CLN3-211ENST00000564091 V9GY48 417 aaPredicted RBP19.28■□□□□ 0.68
CLN3-211ENST00000564091 CNTNAP5Q8WYK1 1306 aa19.27■□□□□ 0.68
CLN3-211ENST00000564091 DGKIO75912 1065 aa19.27■□□□□ 0.68
CLN3-211ENST00000564091 FUT2Q10981 343 aa19.27■□□□□ 0.68
CLN3-211ENST00000564091 ITGB3BPQ13352 177 aaPredicted RBP19.27■□□□□ 0.68
CLN3-211ENST00000564091 IER5Q5VY09 327 aa19.27■□□□□ 0.68
CLN3-211ENST00000564091 APOA5Q6Q788 366 aa19.27■□□□□ 0.68
CLN3-211ENST00000564091 CLP1Q92989 425 aaKnown RBP19.27■□□□□ 0.68
CLN3-211ENST00000564091 NEK1Q96PY6 1258 aa19.27■□□□□ 0.68
CLN3-211ENST00000564091 RIC8AQ9NPQ8 531 aa19.27■□□□□ 0.68
CLN3-211ENST00000564091 BRPF3Q9ULD4 1205 aa19.27■□□□□ 0.68
CLN3-211ENST00000564091 POTEB3A0JP26 581 aa19.26■□□□□ 0.67
CLN3-211ENST00000564091 LTBRP36941 435 aa19.26■□□□□ 0.67
CLN3-211ENST00000564091 STAT5BP51692 787 aa19.26■□□□□ 0.67
CLN3-211ENST00000564091 RTN1Q16799 776 aa19.26■□□□□ 0.67
CLN3-211ENST00000564091 CEP55Q53EZ4 464 aa19.26■□□□□ 0.67
CLN3-211ENST00000564091 POTEBQ6S5H4 581 aa19.26■□□□□ 0.67
CLN3-211ENST00000564091 ANO3Q9BYT9 981 aa19.26■□□□□ 0.67
CLN3-211ENST00000564091 AGO4Q9HCK5 861 aaKnown RBP19.26■□□□□ 0.67
CLN3-211ENST00000564091 ALG13Q9NP73 1137 aaKnown RBP19.26■□□□□ 0.67
CLN3-211ENST00000564091 RBM28Q9NW13 759 aaKnown RBP19.26■□□□□ 0.67
CLN3-211ENST00000564091 TMEM260Q9NX78 707 aa19.26■□□□□ 0.67
CLN3-211ENST00000564091 RWDD3Q9Y3V2 267 aa19.26■□□□□ 0.67
CLN3-211ENST00000564091 PCDHA2Q9Y5H9 948 aa19.26■□□□□ 0.67
CLN3-211ENST00000564091 TRPV2Q9Y5S1 764 aa19.26■□□□□ 0.67
CLN3-211ENST00000564091 NFASCO94856 1347 aa19.25■□□□□ 0.67
CLN3-211ENST00000564091 MYO7AQ13402 2215 aa19.25■□□□□ 0.67
CLN3-211ENST00000564091 SMCO2A6NFE2 343 aa19.25■□□□□ 0.67
CLN3-211ENST00000564091 GTF2F1P35269 517 aaKnown RBP eCLIP19.25■□□□□ 0.67
CLN3-211ENST00000564091 ADCY7P51828 1080 aa19.25■□□□□ 0.67
CLN3-211ENST00000564091 EXOSC10Q01780 885 aaKnown RBP19.25■□□□□ 0.67
CLN3-211ENST00000564091 HYAL1Q12794 435 aa19.25■□□□□ 0.67
CLN3-211ENST00000564091 CLUL1Q15846 466 aa19.25■□□□□ 0.67
CLN3-211ENST00000564091 PLPPR4Q7Z2D5 763 aa19.25■□□□□ 0.67
CLN3-211ENST00000564091 RASEFQ8IZ41 740 aa19.25■□□□□ 0.67
CLN3-211ENST00000564091 LMAN2LQ9H0V9 348 aa19.25■□□□□ 0.67
CLN3-211ENST00000564091 PADI3Q9ULW8 664 aa19.25■□□□□ 0.67
CLN3-211ENST00000564091 MRPL42Q9Y6G3 142 aaKnown RBP19.25■□□□□ 0.67
CLN3-211ENST00000564091 MICAL3Q7RTP6 2002 aa19.25■□□□□ 0.67
CLN3-211ENST00000564091 M0QZ92 97 aa19.24■□□□□ 0.67
CLN3-211ENST00000564091 DDX39AO00148 427 aaKnown RBP19.24■□□□□ 0.67
CLN3-211ENST00000564091 STXBP3O00186 592 aa19.24■□□□□ 0.67
CLN3-211ENST00000564091 MEIS1O00470 390 aa19.24■□□□□ 0.67
CLN3-211ENST00000564091 ZBTB43O43298 467 aa19.24■□□□□ 0.67
CLN3-211ENST00000564091 FOSP01100 380 aaPredicted RBP19.24■□□□□ 0.67
CLN3-211ENST00000564091 IBSPP21815 317 aaPredicted RBP19.24■□□□□ 0.67
CLN3-211ENST00000564091 DLX2Q07687 328 aaPredicted RBP19.24■□□□□ 0.67
CLN3-211ENST00000564091 TMEM266Q2M3C6 531 aa19.24■□□□□ 0.67
CLN3-211ENST00000564091 CTC1Q2NKJ3 1217 aa19.24■□□□□ 0.67
Retrieved 100 of 20,778 RNA–protein pairs in 35.4 ms