RNA–Protein interactions for RNA: ENST00000563874.5

CLN3-210, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 3,081 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-210ENST00000563874 AIPL1Q9NZN9 384 aa14.47□□□□□ -0.09
CLN3-210ENST00000563874 LEMD3Q9Y2U8 911 aa14.47□□□□□ -0.09
CLN3-210ENST00000563874 POTEFA5A3E0 1075 aa14.47□□□□□ -0.09
CLN3-210ENST00000563874 MEFVO15553 781 aaPredicted RBP14.47□□□□□ -0.09
CLN3-210ENST00000563874 TOM1O60784 492 aa14.47□□□□□ -0.09
CLN3-210ENST00000563874 UFL1O94874 794 aa14.47□□□□□ -0.09
CLN3-210ENST00000563874 KIF4AO95239 1232 aa14.47□□□□□ -0.09
CLN3-210ENST00000563874 POTEIP0CG38 1075 aa14.47□□□□□ -0.09
CLN3-210ENST00000563874 SMARCA1P28370 1054 aa14.47□□□□□ -0.09
CLN3-210ENST00000563874 GPSM2P81274 684 aa14.47□□□□□ -0.09
CLN3-210ENST00000563874 ITGB3BPQ13352 177 aaPredicted RBP14.47□□□□□ -0.09
CLN3-210ENST00000563874 DCAF17Q5H9S7 520 aaPredicted RBP14.47□□□□□ -0.09
CLN3-210ENST00000563874 POTEGQ6S5H5 508 aa14.47□□□□□ -0.09
CLN3-210ENST00000563874 POTEEQ6S8J3 1075 aa14.47□□□□□ -0.09
CLN3-210ENST00000563874 MREGQ8N565 214 aa14.47□□□□□ -0.09
CLN3-210ENST00000563874 GOLGA6L10A6NI86 522 aa14.46□□□□□ -0.09
CLN3-210ENST00000563874 USP17L10C9JJH3 530 aa14.46□□□□□ -0.09
CLN3-210ENST00000563874 F8W031 263 aaPredicted RBP14.46□□□□□ -0.09
CLN3-210ENST00000563874 MEIS1O00470 390 aa14.46□□□□□ -0.09
CLN3-210ENST00000563874 ITGA4P13612 1032 aa14.46□□□□□ -0.09
CLN3-210ENST00000563874 CYP11B2P19099 503 aa14.46□□□□□ -0.09
CLN3-210ENST00000563874 ECHS1P30084 290 aa14.46□□□□□ -0.09
CLN3-210ENST00000563874 FLT3P36888 993 aa14.46□□□□□ -0.09
CLN3-210ENST00000563874 IFT88Q13099 833 aa14.46□□□□□ -0.09
CLN3-210ENST00000563874 TCERG1LQ5VWI1 586 aa14.46□□□□□ -0.09
CLN3-210ENST00000563874 PPP4R3AQ6IN85 833 aa14.46□□□□□ -0.09
CLN3-210ENST00000563874 NLRP14Q86W24 1093 aa14.46□□□□□ -0.09
CLN3-210ENST00000563874 MYCBPAPQ8TBZ2 947 aa14.46□□□□□ -0.09
CLN3-210ENST00000563874 BCAS3Q9H6U6 928 aa14.46□□□□□ -0.09
CLN3-210ENST00000563874 HDAC9Q9UKV0 1011 aa14.46□□□□□ -0.09
CLN3-210ENST00000563874 DDX60LQ5H9U9 1706 aaKnown RBP14.46□□□□□ -0.09
CLN3-210ENST00000563874 NAV1Q8NEY1 1877 aa14.46□□□□□ -0.09
CLN3-210ENST00000563874 SART1O43290 800 aaKnown RBP14.46□□□□□ -0.09
CLN3-210ENST00000563874 GRAPQ13588 217 aa14.46□□□□□ -0.09
CLN3-210ENST00000563874 UAP1Q16222 522 aaPredicted RBP14.46□□□□□ -0.09
CLN3-210ENST00000563874 IRF2BP2Q7Z5L9 587 aa14.46□□□□□ -0.09
CLN3-210ENST00000563874 GRAPLQ8TC17 118 aaPredicted RBP14.46□□□□□ -0.09
CLN3-210ENST00000563874 GOLGB1Q14789 3259 aaKnown RBP14.46□□□□□ -0.1
CLN3-210ENST00000563874 PNMA6FA0A0J9YX94 578 aa14.45□□□□□ -0.1
CLN3-210ENST00000563874 CETN3O15182 167 aa14.45□□□□□ -0.1
CLN3-210ENST00000563874 UCHL3P15374 230 aa14.45□□□□□ -0.1
CLN3-210ENST00000563874 TMOD1P28289 359 aa14.45□□□□□ -0.1
CLN3-210ENST00000563874 CTNNA1P35221 906 aaKnown RBP14.45□□□□□ -0.1
CLN3-210ENST00000563874 HSPA9P38646 679 aaKnown RBP14.45□□□□□ -0.1
CLN3-210ENST00000563874 FAM98CQ17RN3 349 aaKnown RBP14.45□□□□□ -0.1
CLN3-210ENST00000563874 ASPRV1Q53RT3 343 aa14.45□□□□□ -0.1
CLN3-210ENST00000563874 GJB7Q6PEY0 223 aa14.45□□□□□ -0.1
CLN3-210ENST00000563874 SUGP1Q8IWZ8 645 aaKnown RBP14.45□□□□□ -0.1
CLN3-210ENST00000563874 RBM46Q8TBY0 533 aaKnown RBP14.45□□□□□ -0.1
CLN3-210ENST00000563874 UBLCP1Q8WVY7 318 aaPredicted RBP14.45□□□□□ -0.1
CLN3-210ENST00000563874 ARHGEF1Q92888 912 aaKnown RBP14.45□□□□□ -0.1
CLN3-210ENST00000563874 CUL5Q93034 780 aa14.45□□□□□ -0.1
CLN3-210ENST00000563874 PSTPIP2Q9H939 334 aa14.45□□□□□ -0.1
CLN3-210ENST00000563874 AMACRQ9UHK6 382 aa14.45□□□□□ -0.1
CLN3-210ENST00000563874 TMEM59LQ9UK28 342 aa14.45□□□□□ -0.1
CLN3-210ENST00000563874 THRAP3Q9Y2W1 955 aaKnown RBP14.45□□□□□ -0.1
CLN3-210ENST00000563874 COL16A1Q07092 1604 aaPredicted RBP14.45□□□□□ -0.1
CLN3-210ENST00000563874 A6NNZ2 444 aa14.45□□□□□ -0.1
CLN3-210ENST00000563874 MED24O75448 989 aa14.45□□□□□ -0.1
CLN3-210ENST00000563874 GNA14O95837 355 aa14.45□□□□□ -0.1
CLN3-210ENST00000563874 PSMC6P62333 389 aa14.45□□□□□ -0.1
CLN3-210ENST00000563874 TUBB8Q3ZCM7 444 aa14.45□□□□□ -0.1
CLN3-210ENST00000563874 ARSHQ5FYA8 562 aa14.45□□□□□ -0.1
CLN3-210ENST00000563874 MCTP2Q6DN12 878 aa14.45□□□□□ -0.1
CLN3-210ENST00000563874 ALKBH5Q6P6C2 394 aaKnown RBP14.45□□□□□ -0.1
CLN3-210ENST00000563874 CD302Q8IX05 232 aa14.45□□□□□ -0.1
CLN3-210ENST00000563874 METTL13Q8N6R0 699 aa14.45□□□□□ -0.1
CLN3-210ENST00000563874 ISCUQ9H1K1 167 aa14.45□□□□□ -0.1
CLN3-210ENST00000563874 HMGB1P1B2RPK0 211 aaPredicted RBP14.45□□□□□ -0.1
CLN3-210ENST00000563874 GCOM1H8Y6P7 765 aaPredicted RBP14.45□□□□□ -0.1
CLN3-210ENST00000563874 RPS6KA4O75676 772 aa14.45□□□□□ -0.1
CLN3-210ENST00000563874 MYZAPP0CAP1 466 aa14.45□□□□□ -0.1
CLN3-210ENST00000563874 USP11P51784 963 aa14.45□□□□□ -0.1
CLN3-210ENST00000563874 FAM182BQ5T319 152 aa14.45□□□□□ -0.1
CLN3-210ENST00000563874 NT5C3AQ9H0P0 336 aa14.45□□□□□ -0.1
CLN3-210ENST00000563874 TMBIM4Q9HC24 238 aa14.45□□□□□ -0.1
CLN3-210ENST00000563874 NAGPAQ9UK23 515 aa14.45□□□□□ -0.1
CLN3-210ENST00000563874 AJAP1Q9UKB5 411 aaPredicted RBP14.45□□□□□ -0.1
CLN3-210ENST00000563874 NOC2LQ9Y3T9 749 aaKnown RBP14.45□□□□□ -0.1
CLN3-210ENST00000563874 hCG_1984214I3L0E3 225 aa14.44□□□□□ -0.1
CLN3-210ENST00000563874 KRIT1O00522 736 aa14.44□□□□□ -0.1
CLN3-210ENST00000563874 MPHOSPH10O00566 681 aaKnown RBP14.44□□□□□ -0.1
CLN3-210ENST00000563874 DAPK3O43293 454 aa14.44□□□□□ -0.1
CLN3-210ENST00000563874 RFC4P35249 363 aa14.44□□□□□ -0.1
CLN3-210ENST00000563874 PABPC4Q13310 644 aaKnown RBP eCLIP14.44□□□□□ -0.13e-6■■■■□ 26.6
CLN3-210ENST00000563874 ODF2Q5BJF6 829 aa14.44□□□□□ -0.1
CLN3-210ENST00000563874 ARHGAP27Q6ZUM4 889 aa14.44□□□□□ -0.1
CLN3-210ENST00000563874 ZNF713Q8N859 430 aaPredicted RBP14.44□□□□□ -0.1
CLN3-210ENST00000563874 CELF4Q9BZC1 486 aaKnown RBP14.44□□□□□ -0.1
CLN3-210ENST00000563874 TRIM31Q9BZY9 425 aa14.44□□□□□ -0.1
CLN3-210ENST00000563874 ARMCX3Q9UH62 379 aaPredicted RBP14.44□□□□□ -0.1
CLN3-210ENST00000563874 RTCBQ9Y3I0 505 aaKnown RBP14.44□□□□□ -0.1
CLN3-210ENST00000563874 CNTNAP4Q9C0A0 1308 aa14.44□□□□□ -0.1
CLN3-210ENST00000563874 MYBP10242 640 aa14.44□□□□□ -0.1
CLN3-210ENST00000563874 FNTAP49354 379 aa14.44□□□□□ -0.1
CLN3-210ENST00000563874 CLK2P49760 499 aaKnown RBP14.44□□□□□ -0.1
CLN3-210ENST00000563874 ZNF844Q08AG5 666 aa14.44□□□□□ -0.1
CLN3-210ENST00000563874 ZNF543Q08ER8 600 aa14.44□□□□□ -0.1
CLN3-210ENST00000563874 SEPT2Q15019 361 aa14.44□□□□□ -0.1
CLN3-210ENST00000563874 EXOC3L4Q17RC7 722 aa14.44□□□□□ -0.1
Retrieved 100 of 20,778 RNA–protein pairs in 15.4 ms