RNA–Protein interactions for RNA: ENST00000563400.1

VPS35P1-201, Transcript of VPS35, retromer complex component pseudogene 1, humanhuman

BASIC

Gene VPS35P1, Length 1,518 nt, Biotype unprocessed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35P1-201ENST00000563400 SF1Q15637 639 aaKnown RBP6.07□□□□□ -1.44
VPS35P1-201ENST00000563400 KIAA0753Q2KHM9 967 aa6.07□□□□□ -1.44
VPS35P1-201ENST00000563400 PRRT3Q5FWE3 981 aa6.07□□□□□ -1.44
VPS35P1-201ENST00000563400 TDRD10Q5VZ19 366 aaKnown RBP6.07□□□□□ -1.44
VPS35P1-201ENST00000563400 ADAMTSL4Q6UY14 1074 aa6.07□□□□□ -1.44
VPS35P1-201ENST00000563400 SRGAP1Q7Z6B7 1085 aa6.07□□□□□ -1.44
VPS35P1-201ENST00000563400 SAPCD2Q86UD0 394 aa6.07□□□□□ -1.44
VPS35P1-201ENST00000563400 PTRH1Q86Y79 214 aaKnown RBP6.07□□□□□ -1.44
VPS35P1-201ENST00000563400 KCT2Q8NC54 265 aa6.07□□□□□ -1.44
VPS35P1-201ENST00000563400 ZNF417Q8TAU3 575 aa6.07□□□□□ -1.44
VPS35P1-201ENST00000563400 RPGRQ92834 1020 aaKnown RBP6.07□□□□□ -1.44
VPS35P1-201ENST00000563400 NXPE3Q969Y0 559 aa6.07□□□□□ -1.44
VPS35P1-201ENST00000563400 ZBTB10Q96DT7 871 aa6.07□□□□□ -1.44
VPS35P1-201ENST00000563400 CDHR1Q96JP9 859 aa6.07□□□□□ -1.44
VPS35P1-201ENST00000563400 UBXN10Q96LJ8 280 aa6.07□□□□□ -1.44
VPS35P1-201ENST00000563400 FGD4Q96M96 766 aa6.07□□□□□ -1.44
VPS35P1-201ENST00000563400 ZNF587Q96SQ5 575 aaPredicted RBP6.07□□□□□ -1.44
VPS35P1-201ENST00000563400 SLC26A6Q9BXS9 759 aa6.07□□□□□ -1.44
VPS35P1-201ENST00000563400 BHLHE41Q9C0J9 482 aaPredicted RBP6.07□□□□□ -1.44
VPS35P1-201ENST00000563400 BHMT2Q9H2M3 363 aa6.07□□□□□ -1.44
VPS35P1-201ENST00000563400 ANKEF1Q9NU02 776 aa6.07□□□□□ -1.44
VPS35P1-201ENST00000563400 THG1LQ9NWX6 298 aaKnown RBP6.07□□□□□ -1.44
VPS35P1-201ENST00000563400 IFT80Q9P2H3 777 aaPredicted RBP6.07□□□□□ -1.44
VPS35P1-201ENST00000563400 MRFAP1Q9Y605 127 aa6.07□□□□□ -1.44
VPS35P1-201ENST00000563400 MED14O60244 1454 aa6.06□□□□□ -1.44
VPS35P1-201ENST00000563400 KIF1BO60333 1816 aa6.06□□□□□ -1.44
VPS35P1-201ENST00000563400 GFRA2O00451 464 aa6.06□□□□□ -1.44
VPS35P1-201ENST00000563400 GOLIM4O00461 696 aa6.06□□□□□ -1.44
VPS35P1-201ENST00000563400 LILRB5O75023 590 aa6.06□□□□□ -1.44
VPS35P1-201ENST00000563400 TBC1D8O95759 1140 aa6.06□□□□□ -1.44
VPS35P1-201ENST00000563400 CFBP00751 764 aa6.06□□□□□ -1.44
VPS35P1-201ENST00000563400 VCAM1P19320 739 aa6.06□□□□□ -1.44
VPS35P1-201ENST00000563400 ARNTP27540 789 aa6.06□□□□□ -1.44
VPS35P1-201ENST00000563400 PPM1AP35813 382 aa6.06□□□□□ -1.44
VPS35P1-201ENST00000563400 UBA7P41226 1012 aa6.06□□□□□ -1.44
VPS35P1-201ENST00000563400 PRIM2P49643 509 aa6.06□□□□□ -1.44
VPS35P1-201ENST00000563400 ROR1Q01973 937 aa6.06□□□□□ -1.44
VPS35P1-201ENST00000563400 SEMA5AQ13591 1074 aa6.06□□□□□ -1.44
VPS35P1-201ENST00000563400 LRRC32Q14392 662 aa6.06□□□□□ -1.44
VPS35P1-201ENST00000563400 NTRK3Q16288 839 aa6.06□□□□□ -1.44
VPS35P1-201ENST00000563400 CDCP2Q5VXM1 449 aa6.06□□□□□ -1.44
VPS35P1-201ENST00000563400 NDUFAF2Q8N183 169 aa6.06□□□□□ -1.44
VPS35P1-201ENST00000563400 OR2C3Q8N628 320 aa6.06□□□□□ -1.44
VPS35P1-201ENST00000563400 ZNF713Q8N859 430 aaPredicted RBP6.06□□□□□ -1.44
VPS35P1-201ENST00000563400 ZNF513Q8N8E2 541 aaPredicted RBP6.06□□□□□ -1.44
VPS35P1-201ENST00000563400 CEP120Q8N960 986 aa6.06□□□□□ -1.44
VPS35P1-201ENST00000563400 FRS2Q8WU20 508 aa6.06□□□□□ -1.44
VPS35P1-201ENST00000563400 CHTF18Q8WVB6 975 aa6.06□□□□□ -1.44
VPS35P1-201ENST00000563400 ZNF496Q96IT1 587 aaPredicted RBP6.06□□□□□ -1.44
VPS35P1-201ENST00000563400 TEKT5Q96M29 485 aa6.06□□□□□ -1.44
VPS35P1-201ENST00000563400 SEC62Q99442 399 aaKnown RBP6.06□□□□□ -1.44
VPS35P1-201ENST00000563400 MDFIQ99750 246 aa6.06□□□□□ -1.44
VPS35P1-201ENST00000563400 PLVAPQ9BX97 442 aa6.06□□□□□ -1.44
VPS35P1-201ENST00000563400 C19orf44Q9H6X5 657 aa6.06□□□□□ -1.44
VPS35P1-201ENST00000563400 C14orf93Q9H972 538 aaKnown RBP6.06□□□□□ -1.44
VPS35P1-201ENST00000563400 ARFGAP3Q9NP61 516 aa6.06□□□□□ -1.44
VPS35P1-201ENST00000563400 PRDM6Q9NQX0 595 aa6.06□□□□□ -1.44
VPS35P1-201ENST00000563400 ITM2CQ9NQX7 267 aa6.06□□□□□ -1.44
VPS35P1-201ENST00000563400 GJD2Q9UKL4 321 aa6.06□□□□□ -1.44
VPS35P1-201ENST00000563400 CEP131Q9UPN4 1083 aa6.06□□□□□ -1.44
VPS35P1-201ENST00000563400 PCDHA9Q9Y5H5 950 aa6.06□□□□□ -1.44
VPS35P1-201ENST00000563400 SLIT1O75093 1534 aa6.06□□□□□ -1.44
VPS35P1-201ENST00000563400 CEP152O94986 1710 aa6.06□□□□□ -1.44
VPS35P1-201ENST00000563400 MSH6P52701 1360 aa6.05□□□□□ -1.44
VPS35P1-201ENST00000563400 ADGRB3O60242 1522 aa6.05□□□□□ -1.44
VPS35P1-201ENST00000563400 KLHL33A6NCF5 533 aa6.05□□□□□ -1.44
VPS35P1-201ENST00000563400 TTC36A6NLP5 189 aa6.05□□□□□ -1.44
VPS35P1-201ENST00000563400 CBX4O00257 560 aa6.05□□□□□ -1.44
VPS35P1-201ENST00000563400 MSTNO14793 375 aa6.05□□□□□ -1.44
VPS35P1-201ENST00000563400 BAIAP3O94812 1187 aa6.05□□□□□ -1.44
VPS35P1-201ENST00000563400 RARAP10276 462 aa6.05□□□□□ -1.44
VPS35P1-201ENST00000563400 HOXB4P17483 251 aaPredicted RBP6.05□□□□□ -1.44
VPS35P1-201ENST00000563400 SMARCA1P28370 1054 aa6.05□□□□□ -1.44
VPS35P1-201ENST00000563400 ZNF143P52747 638 aaPredicted RBP6.05□□□□□ -1.44
VPS35P1-201ENST00000563400 SCAND1P57086 179 aa6.05□□□□□ -1.44
VPS35P1-201ENST00000563400 KRT85P78386 507 aa6.05□□□□□ -1.44
VPS35P1-201ENST00000563400 TNFAIP2Q03169 654 aa6.05□□□□□ -1.44
VPS35P1-201ENST00000563400 CLUL1Q15846 466 aa6.05□□□□□ -1.44
VPS35P1-201ENST00000563400 CCDC38Q502W7 563 aa6.05□□□□□ -1.44
VPS35P1-201ENST00000563400 KIAA1614Q5VZ46 1190 aa6.05□□□□□ -1.44
VPS35P1-201ENST00000563400 MICALL1Q8N3F8 863 aa6.05□□□□□ -1.44
VPS35P1-201ENST00000563400 LSMEM1Q8N8F7 131 aa6.05□□□□□ -1.44
VPS35P1-201ENST00000563400 BTN2A2Q8WVV5 523 aa6.05□□□□□ -1.44
VPS35P1-201ENST00000563400 HDAC2Q92769 488 aaKnown RBP6.05□□□□□ -1.44
VPS35P1-201ENST00000563400 PTPRN2Q92932 1015 aa6.05□□□□□ -1.44
VPS35P1-201ENST00000563400 DDX11Q96FC9 970 aa6.05□□□□□ -1.44
VPS35P1-201ENST00000563400 ORAI3Q9BRQ5 295 aa6.05□□□□□ -1.44
VPS35P1-201ENST00000563400 FAM204AQ9H8W3 233 aa6.05□□□□□ -1.44
VPS35P1-201ENST00000563400 ZCCHC17Q9NP64 241 aaKnown RBP6.05□□□□□ -1.44
VPS35P1-201ENST00000563400 DNAJB12Q9NXW2 375 aaKnown RBP6.05□□□□□ -1.44
VPS35P1-201ENST00000563400 GGA3Q9NZ52 723 aa6.05□□□□□ -1.44
VPS35P1-201ENST00000563400 KLHL3Q9UH77 587 aa6.05□□□□□ -1.44
VPS35P1-201ENST00000563400 SLC6A14Q9UN76 642 aa6.05□□□□□ -1.44
VPS35P1-201ENST00000563400 INVSQ9Y283 1065 aa6.05□□□□□ -1.44
VPS35P1-201ENST00000563400 SPHKAPQ2M3C7 1700 aa6.05□□□□□ -1.44
VPS35P1-201ENST00000563400 LMTK3Q96Q04 1460 aa6.05□□□□□ -1.44
VPS35P1-201ENST00000563400 LRPPRCP42704 1394 aaKnown RBP6.05□□□□□ -1.44
VPS35P1-201ENST00000563400 CFAP65Q6ZU64 1925 aaKnown RBP6.05□□□□□ -1.44
VPS35P1-201ENST00000563400 CHURC1-FNTBB4DL54 471 aa6.04□□□□□ -1.44
VPS35P1-201ENST00000563400 AREL1O15033 823 aa6.04□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms