RNA–Protein interactions for RNA: ENST00000561673.1

CLK3-205, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 639 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-205ENST00000561673 ARNTL2Q8WYA1 636 aa11.74□□□□□ -0.53
CLK3-205ENST00000561673 PCYT2Q99447 389 aa11.74□□□□□ -0.53
CLK3-205ENST00000561673 RAD9AQ99638 391 aa11.74□□□□□ -0.53
CLK3-205ENST00000561673 SDF4Q9BRK5 362 aa11.74□□□□□ -0.53
CLK3-205ENST00000561673 ZMYND12Q9H0C1 365 aa11.74□□□□□ -0.53
CLK3-205ENST00000561673 ZSWIM6Q9HCJ5 1215 aa11.74□□□□□ -0.53
CLK3-205ENST00000561673 PRDM6Q9NQX0 595 aa11.74□□□□□ -0.53
CLK3-205ENST00000561673 NFASCO94856 1347 aa11.74□□□□□ -0.53
CLK3-205ENST00000561673 ESYT2A0FGR8 921 aa11.73□□□□□ -0.53
CLK3-205ENST00000561673 MBLAC1A4D2B0 266 aaPredicted RBP11.73□□□□□ -0.53
CLK3-205ENST00000561673 FAM86B1E9PN63 330 aa11.73□□□□□ -0.53
CLK3-205ENST00000561673 GJB5O95377 273 aa11.73□□□□□ -0.53
CLK3-205ENST00000561673 CHRNA1P02708 482 aa11.73□□□□□ -0.53
CLK3-205ENST00000561673 FAM86B2P0C5J1 330 aa11.73□□□□□ -0.53
CLK3-205ENST00000561673 ZNF76P36508 570 aa11.73□□□□□ -0.53
CLK3-205ENST00000561673 ACTR2P61160 394 aa11.73□□□□□ -0.53
CLK3-205ENST00000561673 TOB2Q14106 344 aaPredicted RBP11.73□□□□□ -0.53
CLK3-205ENST00000561673 FAM26DQ5JW98 314 aa11.73□□□□□ -0.53
CLK3-205ENST00000561673 FAM117BQ6P1L5 589 aa11.73□□□□□ -0.53
CLK3-205ENST00000561673 NIPA1Q7RTP0 329 aa11.73□□□□□ -0.53
CLK3-205ENST00000561673 RPAINQ86UA6 219 aa11.73□□□□□ -0.53
CLK3-205ENST00000561673 CRYGNQ8WXF5 182 aa11.73□□□□□ -0.53
CLK3-205ENST00000561673 GBF1Q92538 1859 aa11.73□□□□□ -0.53
CLK3-205ENST00000561673 AZI2Q9H6S1 392 aa11.73□□□□□ -0.53
CLK3-205ENST00000561673 DOCK5Q9H7D0 1870 aa11.73□□□□□ -0.53
CLK3-205ENST00000561673 NCOA5Q9HCD5 579 aaKnown RBP11.73□□□□□ -0.53
CLK3-205ENST00000561673 C6orf50Q9HD87 102 aa11.73□□□□□ -0.53
CLK3-205ENST00000561673 CYP46A1Q9Y6A2 500 aa11.73□□□□□ -0.53
CLK3-205ENST00000561673 ATG7O95352 703 aa11.72□□□□□ -0.53
CLK3-205ENST00000561673 CYP3A4P08684 503 aa11.72□□□□□ -0.53
CLK3-205ENST00000561673 INSRRP14616 1297 aa11.72□□□□□ -0.53
CLK3-205ENST00000561673 IFNAR1P17181 557 aa11.72□□□□□ -0.53
CLK3-205ENST00000561673 POU3F3P20264 500 aaPredicted RBP11.72□□□□□ -0.53
CLK3-205ENST00000561673 IGBP1P78318 339 aa11.72□□□□□ -0.53
CLK3-205ENST00000561673 AKAP17AQ02040 695 aaKnown RBP11.72□□□□□ -0.53
CLK3-205ENST00000561673 TAF2Q6P1X5 1199 aa11.72□□□□□ -0.53
CLK3-205ENST00000561673 PLPPR4Q7Z2D5 763 aa11.72□□□□□ -0.53
CLK3-205ENST00000561673 MYOCDQ8IZQ8 938 aa11.72□□□□□ -0.53
CLK3-205ENST00000561673 CCDC12Q8WUD4 166 aaPredicted RBP11.72□□□□□ -0.53
CLK3-205ENST00000561673 SEPT8Q92599 483 aa11.72□□□□□ -0.53
CLK3-205ENST00000561673 ZBTB10Q96DT7 871 aa11.72□□□□□ -0.53
CLK3-205ENST00000561673 UIMC1Q96RL1 719 aa11.72□□□□□ -0.53
CLK3-205ENST00000561673 LARP6Q9BRS8 491 aaKnown RBP11.72□□□□□ -0.53
CLK3-205ENST00000561673 SLC26A6Q9BXS9 759 aa11.72□□□□□ -0.53
CLK3-205ENST00000561673 RNF26Q9BY78 433 aaPredicted RBP11.72□□□□□ -0.53
CLK3-205ENST00000561673 PPP4R2Q9NY27 417 aa11.72□□□□□ -0.53
CLK3-205ENST00000561673 TUBE1Q9UJT0 475 aa11.72□□□□□ -0.53
CLK3-205ENST00000561673 MTCH2Q9Y6C9 303 aa11.72□□□□□ -0.53
CLK3-205ENST00000561673 IGLV3-22A0A075B6J6 115 aa11.71□□□□□ -0.53
CLK3-205ENST00000561673 LOC101059915A0A1B0GWI6 518 aaPredicted RBP11.71□□□□□ -0.53
CLK3-205ENST00000561673 RRN3P2A6NIE6 340 aa11.71□□□□□ -0.53
CLK3-205ENST00000561673 DDX39AO00148 427 aaKnown RBP11.71□□□□□ -0.53
CLK3-205ENST00000561673 DHX15O43143 795 aaKnown RBP11.71□□□□□ -0.53
CLK3-205ENST00000561673 CCNE2O96020 404 aa11.71□□□□□ -0.53
CLK3-205ENST00000561673 AMHP03971 560 aa11.71□□□□□ -0.53
CLK3-205ENST00000561673 GNA11P29992 359 aa11.71□□□□□ -0.53
CLK3-205ENST00000561673 STAT5BP51692 787 aa11.71□□□□□ -0.53
CLK3-205ENST00000561673 MGAT3Q09327 533 aa11.71□□□□□ -0.53
CLK3-205ENST00000561673 PLCB4Q15147 1175 aa11.71□□□□□ -0.53
CLK3-205ENST00000561673 KRT40Q6A162 431 aa11.71□□□□□ -0.53
CLK3-205ENST00000561673 MCTP2Q6DN12 878 aa11.71□□□□□ -0.53
CLK3-205ENST00000561673 ABHD15Q6UXT9 468 aa11.71□□□□□ -0.53
CLK3-205ENST00000561673 RSPH3Q86UC2 560 aa11.71□□□□□ -0.53
CLK3-205ENST00000561673 PLA2G4DQ86XP0 818 aa11.71□□□□□ -0.53
CLK3-205ENST00000561673 REXO1Q8N1G1 1221 aaKnown RBP11.71□□□□□ -0.53
CLK3-205ENST00000561673 MICALL1Q8N3F8 863 aa11.71□□□□□ -0.53
CLK3-205ENST00000561673 RASGRP4Q8TDF6 673 aa11.71□□□□□ -0.53
CLK3-205ENST00000561673 DNAJB3Q8WWF6 145 aa11.71□□□□□ -0.53
CLK3-205ENST00000561673 UPF3BQ9BZI7 483 aaKnown RBP11.71□□□□□ -0.53
CLK3-205ENST00000561673 TM6SF1Q9BZW5 370 aa11.71□□□□□ -0.53
CLK3-205ENST00000561673 VPS54Q9P1Q0 977 aa11.71□□□□□ -0.53
CLK3-205ENST00000561673 INSL6Q9Y581 213 aa11.71□□□□□ -0.53
CLK3-205ENST00000561673 CUL9Q8IWT3 2517 aa11.7□□□□□ -0.54
CLK3-205ENST00000561673 IGKV6D-21A0A0A0MT36 114 aa11.7□□□□□ -0.54
CLK3-205ENST00000561673 POTEB3A0JP26 581 aa11.7□□□□□ -0.54
CLK3-205ENST00000561673 LINC01553A4QN01 128 aa11.7□□□□□ -0.54
CLK3-205ENST00000561673 IPO5O00410 1097 aaKnown RBP11.7□□□□□ -0.54
CLK3-205ENST00000561673 GTPBP6O43824 516 aaPredicted RBP11.7□□□□□ -0.54
CLK3-205ENST00000561673 LPXNO60711 386 aa11.7□□□□□ -0.54
CLK3-205ENST00000561673 GRB10Q13322 594 aa11.7□□□□□ -0.54
CLK3-205ENST00000561673 POTEBQ6S5H4 581 aa11.7□□□□□ -0.54
CLK3-205ENST00000561673 BICD2Q8TD16 824 aa11.7□□□□□ -0.54
CLK3-205ENST00000561673 TRAPPC12Q8WVT3 735 aa11.7□□□□□ -0.54
CLK3-205ENST00000561673 APBB2Q92870 758 aa11.7□□□□□ -0.54
CLK3-205ENST00000561673 TNPO1Q92973 898 aaKnown RBP11.7□□□□□ -0.54
CLK3-205ENST00000561673 TOP1MTQ969P6 601 aa11.7□□□□□ -0.54
CLK3-205ENST00000561673 ZNF274Q96GC6 653 aaPredicted RBP11.7□□□□□ -0.54
CLK3-205ENST00000561673 IFIH1Q9BYX4 1025 aaKnown RBP11.7□□□□□ -0.54
CLK3-205ENST00000561673 PDRG1Q9NUG6 133 aa11.7□□□□□ -0.54
CLK3-205ENST00000561673 TRPC6Q9Y210 931 aa11.7□□□□□ -0.54
CLK3-205ENST00000561673 EDIL3O43854 480 aa11.69□□□□□ -0.54
CLK3-205ENST00000561673 UPP2O95045 317 aa11.69□□□□□ -0.54
CLK3-205ENST00000561673 GHRP10912 638 aa11.69□□□□□ -0.54
CLK3-205ENST00000561673 ERVK-21P61565 698 aa11.69□□□□□ -0.54
CLK3-205ENST00000561673 HTRA4P83105 476 aaPredicted RBP11.69□□□□□ -0.54
CLK3-205ENST00000561673 SSRP1Q08945 709 aaKnown RBP11.69□□□□□ -0.54
CLK3-205ENST00000561673 LPIN1Q14693 890 aa11.69□□□□□ -0.54
CLK3-205ENST00000561673 PRR16Q569H4 304 aa11.69□□□□□ -0.54
CLK3-205ENST00000561673 TJAP1Q5JTD0 557 aa11.69□□□□□ -0.54
CLK3-205ENST00000561673 CCDC148Q8NFR7 591 aa11.69□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 146.7 ms